Wall clock time and date at job start Mon Mar 30 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.53005 * 109.46870 * 119.99678 * 2 1 3 5 5 H 1.09001 * 109.47121 * 305.61313 * 4 2 1 6 6 N 1.46907 * 109.46895 * 185.61617 * 4 2 1 7 7 C 1.46896 * 110.99784 * 138.54870 * 6 4 2 8 8 H 1.09011 * 109.47132 * 33.44229 * 7 6 4 9 9 C 1.52995 * 109.47564 * 273.44127 * 7 6 4 10 10 C 1.50696 * 109.47139 * 153.43733 * 7 6 4 11 11 H 1.08008 * 119.99788 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00329 * 179.97438 * 10 7 6 13 13 N 1.31509 * 119.99727 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00071 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47104 * 60.00229 * 14 12 10 16 16 H 1.48498 * 109.47123 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47028 * 300.00243 * 14 12 10 18 18 C 1.52998 * 109.46909 * 65.62056 * 4 2 1 19 19 C 1.53782 * 113.61095 * 174.39504 * 18 4 2 20 20 C 1.53781 * 87.08108 * 139.97906 * 19 18 4 21 21 C 1.53779 * 113.61214 * 271.88827 * 18 4 2 22 22 H 1.09004 * 109.47041 * 300.00380 * 1 2 3 23 23 H 1.09001 * 109.46858 * 60.00030 * 1 2 3 24 24 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46983 * 239.99919 * 2 1 3 26 26 H 1.09004 * 109.46628 * 185.16417 * 3 2 1 27 27 H 1.08996 * 109.47112 * 305.15883 * 3 2 1 28 28 H 1.08996 * 109.47217 * 65.16475 * 3 2 1 29 29 H 1.00899 * 110.99918 * 262.50931 * 6 4 2 30 30 H 1.09004 * 109.47209 * 63.00247 * 9 7 6 31 31 H 1.09003 * 109.47395 * 182.99723 * 9 7 6 32 32 H 1.08997 * 109.47144 * 303.00418 * 9 7 6 33 33 H 0.97008 * 119.99943 * 179.97438 * 13 12 10 34 34 H 1.09000 * 112.91267 * 43.13993 * 18 4 2 35 35 H 1.08997 * 113.61884 * 25.42653 * 19 18 4 36 36 H 1.08997 * 113.61320 * 254.52312 * 19 18 4 37 37 H 1.08999 * 113.61700 * 89.11688 * 20 19 18 38 38 H 1.09000 * 113.61745 * 220.01798 * 20 19 18 39 39 H 1.08999 * 113.61898 * 105.47430 * 21 18 4 40 40 H 1.09010 * 113.69164 * 334.57923 * 21 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5969 -0.2686 2.1364 6 7 3.5028 -0.6049 1.3190 7 6 3.9447 -0.3383 2.6943 8 1 3.2781 -0.8422 3.3943 9 6 3.9148 1.1688 2.9566 10 6 5.3490 -0.8526 2.8793 11 1 5.8621 -1.3295 2.0573 12 6 5.9793 -0.7134 4.0977 13 7 5.3547 -0.1323 5.0985 14 14 7.7204 -1.3504 4.3268 15 1 8.6281 -0.6639 3.3729 16 1 8.1671 -1.0809 5.7171 17 1 7.7498 -2.8132 4.0726 18 6 1.6485 -2.1987 1.1807 19 6 2.2317 -3.0442 2.3253 20 6 0.8774 -3.7711 2.3731 21 6 0.2610 -2.4964 1.7730 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1261 1.4438 -0.0925 27 1 1.6032 1.9823 -0.8401 28 1 1.7542 1.9289 0.9326 29 1 3.9492 -1.4309 0.9494 30 1 2.8901 1.5315 2.8751 31 1 4.2930 1.3708 3.9587 32 1 4.5398 1.6777 2.2228 33 1 5.7980 -0.0347 5.9559 34 1 1.8043 -2.6335 0.1934 35 1 2.4508 -2.4693 3.2250 36 1 3.0596 -3.6832 2.0180 37 1 0.8224 -4.6358 1.7118 38 1 0.5337 -3.9879 3.3845 39 1 -0.5022 -2.6932 1.0201 40 1 -0.0601 -1.7724 2.5220 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324960881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:34 Heat of formation + Delta-G solvation = -2.199876 kcal Electronic energy + Delta-G solvation = -16804.253595 eV Core-core repulsion = 14425.733567 eV Total energy + Delta-G solvation = -2378.520027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.27497 -35.77081 -34.22016 -31.85952 -28.74839 -26.93213 -25.65740 -24.98454 -24.87825 -22.50449 -19.85250 -19.52911 -18.74302 -16.33659 -15.31418 -15.22737 -14.60296 -14.23996 -13.60908 -13.36643 -12.92297 -12.61420 -12.02953 -11.92997 -11.74622 -11.62998 -11.46139 -11.24131 -11.00875 -10.84740 -10.77761 -10.42253 -10.36101 -10.21472 -10.06202 -10.04850 -9.86858 -9.60602 -9.45812 -8.74206 -8.40704 -7.05594 -5.98422 -4.04203 3.32472 3.37088 3.39930 4.43023 4.95038 4.99231 5.06084 5.27795 5.31467 5.34155 5.51555 5.59453 5.83963 5.89833 5.95395 6.02270 6.11070 6.17246 6.20882 6.29139 6.33537 6.41197 6.45776 6.48591 6.62544 6.73259 6.87423 6.93007 7.01775 7.04733 7.26742 7.34963 7.61195 7.83227 7.99172 8.34991 8.51186 8.78437 9.08932 9.61543 11.07350 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.008789 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.512386 B = 3185.166853 C = 3816.961382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.103 3.897 5 H 0.064 0.936 6 N -0.680 5.680 7 C 0.214 3.786 8 H 0.004 0.996 9 C -0.125 4.125 10 C -0.514 4.514 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.279 1.279 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.147 4.147 21 C -0.131 4.131 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.330 0.670 30 H 0.003 0.997 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 -2.756 -6.850 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.188 4.188 4 C -0.008 4.008 5 H 0.082 0.918 6 N -0.310 5.310 7 C 0.107 3.893 8 H 0.022 0.978 9 C -0.183 4.183 10 C -0.553 4.553 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.149 4.149 19 C -0.171 4.171 20 C -0.184 4.184 21 C -0.169 4.169 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.147 0.853 30 H 0.022 0.978 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.873 -2.020 -6.816 11.370 hybrid contribution 0.829 -1.210 0.630 1.596 sum -8.045 -3.230 -6.187 10.650 Atomic orbital electron populations 1.21947 0.96562 1.01354 1.00779 1.21074 0.93716 0.96898 0.98301 1.21652 1.02502 0.95003 0.99652 1.21592 0.90887 0.91521 0.96805 0.91799 1.60742 1.02796 1.42327 1.25097 1.19142 0.94394 0.92945 0.82822 0.97805 1.21752 0.96226 0.97843 1.02477 1.21257 0.99524 1.37804 0.96730 0.92518 1.24893 0.97788 0.95273 0.95990 1.69884 1.37270 1.43364 1.02417 0.86651 0.85008 0.79245 0.77009 1.20304 1.21396 1.20435 1.23197 0.96140 0.97378 0.98146 1.22965 0.95850 0.98423 0.99896 1.22843 0.98148 0.96934 1.00497 1.22953 0.96461 0.97696 0.99779 0.93214 0.93658 0.92626 0.92233 0.91093 0.94886 0.93543 0.85307 0.97797 0.90307 0.95223 0.92999 0.90060 0.88902 0.91927 0.91005 0.92095 0.92219 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.64 37.16 0.32 -1.63 16 2 C -0.08 -1.24 2.66 -90.62 -0.24 -1.48 16 3 C -0.13 -2.11 8.88 37.16 0.33 -1.78 16 4 C 0.10 1.80 1.49 -67.71 -0.10 1.70 16 5 H 0.06 1.25 6.96 -51.93 -0.36 0.89 16 6 N -0.68 -14.02 5.03 -100.95 -0.51 -14.53 16 7 C 0.21 5.26 2.01 -68.87 -0.14 5.13 16 8 H 0.00 0.12 5.69 -51.92 -0.30 -0.18 16 9 C -0.12 -3.09 9.23 37.16 0.34 -2.75 16 10 C -0.51 -13.87 8.59 -34.44 -0.30 -14.17 16 11 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -25.32 11.30 55.43 0.63 -24.69 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.13 -2.00 2.65 -89.81 -0.24 -2.24 16 19 C -0.13 -2.27 6.78 -25.92 -0.18 -2.44 16 20 C -0.15 -2.05 8.08 -25.92 -0.21 -2.26 16 21 C -0.13 -1.80 6.03 -25.92 -0.16 -1.96 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.68 5.50 -51.93 -0.29 0.40 16 25 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 26 H 0.07 1.28 7.65 -51.93 -0.40 0.88 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.79 7.71 -51.93 -0.40 0.39 16 29 H 0.33 6.83 7.48 -39.29 -0.29 6.53 16 30 H 0.00 0.07 7.48 -51.93 -0.39 -0.32 16 31 H 0.08 2.15 5.99 -51.93 -0.31 1.83 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 35 H 0.09 1.87 6.06 -51.93 -0.31 1.56 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.72 7.23 -51.93 -0.38 0.35 16 40 H 0.08 1.11 7.89 -51.92 -0.41 0.70 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -26.88 302.30 -8.17 -35.05 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.17 Total: 5.58 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.66 Total: -22.26 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.12 Total: -39.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.88 -8.17 -35.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324960881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.852 kcal (2) G-P(sol) polarization free energy of solvation -26.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds