Wall clock time and date at job start Mon Mar 30 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.53005 * 109.46870 * 119.99678 * 2 1 3 5 5 H 1.09001 * 109.47121 * 305.61313 * 4 2 1 6 6 N 1.46907 * 109.46895 * 185.61617 * 4 2 1 7 7 C 1.46896 * 110.99784 * 138.54870 * 6 4 2 8 8 H 1.09011 * 109.47132 * 33.44229 * 7 6 4 9 9 C 1.52995 * 109.47564 * 273.44127 * 7 6 4 10 10 C 1.50696 * 109.47139 * 153.43733 * 7 6 4 11 11 H 1.08008 * 119.99788 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00329 * 179.97438 * 10 7 6 13 13 N 1.31509 * 119.99727 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00071 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47104 * 60.00229 * 14 12 10 16 16 H 1.48498 * 109.47123 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47028 * 300.00243 * 14 12 10 18 18 C 1.52998 * 109.46909 * 65.62056 * 4 2 1 19 19 C 1.53782 * 113.61095 * 174.39504 * 18 4 2 20 20 C 1.53781 * 87.08108 * 139.97906 * 19 18 4 21 21 C 1.53779 * 113.61214 * 271.88827 * 18 4 2 22 22 H 1.09004 * 109.47041 * 300.00380 * 1 2 3 23 23 H 1.09001 * 109.46858 * 60.00030 * 1 2 3 24 24 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46983 * 239.99919 * 2 1 3 26 26 H 1.09004 * 109.46628 * 185.16417 * 3 2 1 27 27 H 1.08996 * 109.47112 * 305.15883 * 3 2 1 28 28 H 1.08996 * 109.47217 * 65.16475 * 3 2 1 29 29 H 1.00899 * 110.99918 * 262.50931 * 6 4 2 30 30 H 1.09004 * 109.47209 * 63.00247 * 9 7 6 31 31 H 1.09003 * 109.47395 * 182.99723 * 9 7 6 32 32 H 1.08997 * 109.47144 * 303.00418 * 9 7 6 33 33 H 0.97008 * 119.99943 * 179.97438 * 13 12 10 34 34 H 1.09000 * 112.91267 * 43.13993 * 18 4 2 35 35 H 1.08997 * 113.61884 * 25.42653 * 19 18 4 36 36 H 1.08997 * 113.61320 * 254.52312 * 19 18 4 37 37 H 1.08999 * 113.61700 * 89.11688 * 20 19 18 38 38 H 1.09000 * 113.61745 * 220.01798 * 20 19 18 39 39 H 1.08999 * 113.61898 * 105.47430 * 21 18 4 40 40 H 1.09010 * 113.69164 * 334.57923 * 21 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5969 -0.2686 2.1364 6 7 3.5028 -0.6049 1.3190 7 6 3.9447 -0.3383 2.6943 8 1 3.2781 -0.8422 3.3943 9 6 3.9148 1.1688 2.9566 10 6 5.3490 -0.8526 2.8793 11 1 5.8621 -1.3295 2.0573 12 6 5.9793 -0.7134 4.0977 13 7 5.3547 -0.1323 5.0985 14 14 7.7204 -1.3504 4.3268 15 1 8.6281 -0.6639 3.3729 16 1 8.1671 -1.0809 5.7171 17 1 7.7498 -2.8132 4.0726 18 6 1.6485 -2.1987 1.1807 19 6 2.2317 -3.0442 2.3253 20 6 0.8774 -3.7711 2.3731 21 6 0.2610 -2.4964 1.7730 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1261 1.4438 -0.0925 27 1 1.6032 1.9823 -0.8401 28 1 1.7542 1.9289 0.9326 29 1 3.9492 -1.4309 0.9494 30 1 2.8901 1.5315 2.8751 31 1 4.2930 1.3708 3.9587 32 1 4.5398 1.6777 2.2228 33 1 5.7980 -0.0347 5.9559 34 1 1.8043 -2.6335 0.1934 35 1 2.4508 -2.4693 3.2250 36 1 3.0596 -3.6832 2.0180 37 1 0.8224 -4.6358 1.7118 38 1 0.5337 -3.9879 3.3845 39 1 -0.5022 -2.6932 1.0201 40 1 -0.0601 -1.7724 2.5220 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324960881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:34 Heat of formation + Delta-G solvation = -16.635937 kcal Electronic energy + Delta-G solvation = -16804.879589 eV Core-core repulsion = 14425.733567 eV Total energy + Delta-G solvation = -2379.146022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.61459 -37.28670 -35.87322 -33.73271 -30.51208 -28.19700 -27.43057 -26.66536 -26.22298 -23.84046 -21.74505 -20.91855 -20.02062 -18.33751 -16.92787 -16.55907 -16.27072 -15.78718 -15.11758 -14.95208 -14.38562 -14.15722 -13.46419 -13.42442 -13.27446 -13.05833 -12.83291 -12.77258 -12.69879 -12.48376 -12.36461 -12.21791 -12.13748 -11.88056 -11.50629 -11.43509 -11.21687 -11.11742 -10.87599 -10.68589 -10.47864 -8.76726 -8.09772 -6.22501 1.41059 1.42530 1.49823 2.42271 3.18469 3.58046 3.75477 3.82429 3.99135 4.05952 4.29307 4.38603 4.50560 4.67412 4.73602 4.83073 4.87465 4.94725 4.94896 5.01152 5.05671 5.08952 5.11984 5.16735 5.22290 5.27536 5.32491 5.40979 5.44434 5.55820 5.63154 5.70021 5.72766 5.79498 5.95718 6.28638 6.59540 6.90674 7.13050 7.47677 8.95099 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.008789 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.512386 B = 3185.166853 C = 3816.961382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.128 4.128 4 C 0.104 3.896 5 H 0.038 0.962 6 N -0.677 5.677 7 C 0.225 3.775 8 H -0.024 1.024 9 C -0.111 4.111 10 C -0.530 4.530 11 H 0.055 0.945 12 C 0.014 3.986 13 N -0.918 5.918 14 Si 0.955 3.045 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.123 4.123 19 C -0.146 4.146 20 C -0.134 4.134 21 C -0.120 4.120 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.329 0.671 30 H 0.015 0.985 31 H 0.052 0.948 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -3.714 -8.533 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 C -0.185 4.185 4 C -0.007 4.007 5 H 0.056 0.944 6 N -0.306 5.306 7 C 0.116 3.884 8 H -0.006 1.006 9 C -0.170 4.170 10 C -0.568 4.568 11 H 0.073 0.927 12 C -0.185 4.185 13 N -0.558 5.558 14 Si 0.781 3.219 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.143 4.143 19 C -0.183 4.183 20 C -0.172 4.172 21 C -0.158 4.158 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.146 0.854 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.838 -2.980 -8.515 13.348 hybrid contribution 1.109 -0.893 1.149 1.830 sum -8.728 -3.873 -7.365 12.060 Atomic orbital electron populations 1.21888 0.94231 1.02445 1.01439 1.21050 0.95585 0.95903 0.97029 1.21605 1.01081 0.95934 0.99876 1.21639 0.88586 0.93399 0.97042 0.94412 1.60684 1.05081 1.42389 1.22406 1.18863 0.93039 0.92158 0.84313 1.00633 1.21564 0.96581 0.98199 1.00612 1.21579 1.00623 1.37795 0.96813 0.92690 1.25664 1.01559 0.95518 0.95783 1.70019 1.38741 1.44288 1.02727 0.85657 0.80424 0.78868 0.76933 1.19840 1.21106 1.19726 1.23163 0.97316 0.95406 0.98385 1.22889 0.97540 0.99026 0.98892 1.22830 0.95377 0.97648 1.01312 1.22877 0.95931 0.97054 0.99950 0.93797 0.91785 0.91330 0.91372 0.93463 0.92425 0.95067 0.85414 0.96623 0.92889 0.95687 0.93071 0.88302 0.93066 0.92759 0.88642 0.91958 0.89319 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.64 71.98 0.62 -2.66 16 2 C -0.08 -2.20 2.66 -10.79 -0.03 -2.23 16 3 C -0.13 -3.98 8.88 71.98 0.64 -3.34 16 4 C 0.10 3.59 1.49 44.91 0.07 3.66 16 5 H 0.04 1.51 6.96 -2.39 -0.02 1.49 16 6 N -0.68 -28.29 5.03 -473.30 -2.38 -30.68 16 7 C 0.22 11.42 2.01 44.17 0.09 11.51 16 8 H -0.02 -1.33 5.69 -2.38 -0.01 -1.35 16 9 C -0.11 -5.69 9.23 71.98 0.66 -5.03 16 10 C -0.53 -29.19 8.59 25.60 0.22 -28.97 16 11 H 0.05 2.98 7.59 -2.91 -0.02 2.96 16 12 C 0.01 0.76 5.30 84.66 0.45 1.21 16 13 N -0.92 -53.61 11.30 21.45 0.24 -53.37 16 14 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 16 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.12 -3.64 2.65 -10.27 -0.03 -3.67 16 19 C -0.15 -4.96 6.78 31.12 0.21 -4.75 16 20 C -0.13 -3.49 8.08 31.12 0.25 -3.24 16 21 C -0.12 -3.02 6.03 31.12 0.19 -2.83 16 22 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.41 5.50 -2.39 -0.01 1.39 16 25 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 26 H 0.05 1.68 7.65 -2.39 -0.02 1.66 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 1.04 7.71 -2.39 -0.02 1.02 16 29 H 0.33 13.73 7.48 -89.69 -0.67 13.06 16 30 H 0.01 0.71 7.48 -2.38 -0.02 0.69 16 31 H 0.05 2.99 5.99 -2.39 -0.01 2.97 16 32 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 34 H 0.10 2.63 8.11 -2.39 -0.02 2.62 16 35 H 0.05 2.18 6.06 -2.39 -0.01 2.16 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.76 7.23 -2.39 -0.02 1.74 16 40 H 0.07 1.85 7.89 -2.38 -0.02 1.83 16 Total: -1.00 -58.84 302.30 3.55 -55.29 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.32 Total: 22.94 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 3.34 Total: -40.34 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.14 Total: -84.05 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -58.84 3.55 -55.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324960881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.653 kcal (2) G-P(sol) polarization free energy of solvation -58.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds