Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46996 * 2 1 4 4 C 1.46897 * 111.00056 * 69.30759 * 3 2 1 5 5 H 1.08999 * 109.47172 * 157.35620 * 4 3 2 6 6 C 1.52998 * 109.47153 * 37.35725 * 4 3 2 7 7 C 1.50696 * 109.47184 * 277.35902 * 4 3 2 8 8 H 1.08005 * 120.00166 * 4.99509 * 7 4 3 9 9 C 1.37875 * 120.00468 * 184.99648 * 7 4 3 10 10 N 1.31516 * 119.99777 * 359.97438 * 9 7 4 11 11 Si 1.86797 * 120.00420 * 180.02562 * 9 7 4 12 12 H 1.48497 * 109.47276 * 89.99605 * 11 9 7 13 13 H 1.48502 * 109.47155 * 209.99870 * 11 9 7 14 14 H 1.48499 * 109.46926 * 329.99564 * 11 9 7 15 15 C 1.46895 * 110.99776 * 193.26049 * 3 2 1 16 16 H 1.08996 * 109.47357 * 193.52821 * 15 3 2 17 17 C 1.52999 * 109.47118 * 313.52608 * 15 3 2 18 18 C 1.52998 * 109.47534 * 73.52610 * 15 3 2 19 19 C 1.53779 * 113.61583 * 272.23905 * 18 15 3 20 20 C 1.53949 * 87.02250 * 220.04354 * 19 18 15 21 21 C 1.53775 * 113.61854 * 174.63034 * 18 15 3 22 22 H 1.09001 * 109.47158 * 295.19859 * 1 2 3 23 23 H 1.08997 * 109.47227 * 55.19599 * 1 2 3 24 24 H 1.09002 * 109.47226 * 175.20102 * 1 2 3 25 25 H 1.09002 * 109.46980 * 240.00340 * 2 1 3 26 26 H 1.09002 * 109.47138 * 120.00026 * 2 1 3 27 27 H 1.09001 * 109.47318 * 293.46505 * 6 4 3 28 28 H 1.09003 * 109.47133 * 53.46620 * 6 4 3 29 29 H 1.09003 * 109.47077 * 173.46683 * 6 4 3 30 30 H 0.97002 * 119.99971 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.47502 * 43.17703 * 17 15 3 32 32 H 1.09005 * 109.47152 * 163.18230 * 17 15 3 33 33 H 1.09003 * 109.47434 * 283.17744 * 17 15 3 34 34 H 1.09004 * 112.84878 * 43.42987 * 18 15 3 35 35 H 1.09004 * 113.61341 * 334.56145 * 19 18 15 36 36 H 1.09006 * 113.61805 * 105.46736 * 19 18 15 37 37 H 1.09000 * 113.53926 * 270.81204 * 20 19 18 38 38 H 1.09001 * 113.74542 * 139.94033 * 20 19 18 39 39 H 1.09008 * 113.61389 * 254.52976 * 21 18 15 40 40 H 1.09000 * 113.61643 * 25.34640 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7382 2.0429 1.2829 5 1 2.4259 2.8770 1.4221 6 6 1.9188 1.0376 2.4220 7 6 0.3209 2.5547 1.2848 8 1 -0.3332 2.3365 0.4534 9 6 -0.1411 3.3016 2.3476 10 7 0.6551 3.5670 3.3602 11 14 -1.8983 3.9355 2.3502 12 1 -2.7856 2.9318 2.9908 13 1 -1.9636 5.2101 3.1093 14 1 -2.3425 4.1684 0.9525 15 6 3.4536 1.4364 -0.3146 16 1 3.8426 2.4263 -0.0763 17 6 4.1952 0.3843 0.5126 18 6 3.6596 1.1524 -1.8038 19 6 3.7984 -0.3435 -2.1322 20 6 4.8970 0.0602 -3.1322 21 6 5.1179 1.3110 -2.2652 22 1 -0.3633 0.4375 0.9299 23 1 -0.3633 0.5865 -0.8438 24 1 -0.3634 -1.0241 -0.0860 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.1548 0.2637 2.3482 28 1 2.9062 0.5813 2.3508 29 1 1.8242 1.5515 3.3786 30 1 0.3300 4.0922 4.1081 31 1 3.6281 -0.5465 0.5092 32 1 5.1808 0.2110 0.0805 33 1 4.3051 0.7391 1.5374 34 1 2.9420 1.6737 -2.4373 35 1 4.1656 -0.9415 -1.2980 36 1 2.9134 -0.7711 -2.6036 37 1 4.5176 0.2818 -4.1297 38 1 5.7499 -0.6185 -3.1449 39 1 5.2967 2.2173 -2.8439 40 1 5.8464 1.1677 -1.4672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325671669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = 30.359636 kcal Electronic energy + Delta-G solvation = -17022.399572 eV Core-core repulsion = 14645.291431 eV Total energy + Delta-G solvation = -2377.108141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62882 -36.94950 -32.79890 -30.99441 -29.41241 -27.32899 -25.78579 -25.23904 -24.79763 -22.29713 -20.96951 -18.62699 -18.14291 -16.46859 -15.59596 -15.18656 -14.50806 -14.30322 -13.98726 -13.71536 -12.66852 -12.42030 -12.34359 -11.84624 -11.72497 -11.47811 -11.42711 -11.00625 -10.91817 -10.88180 -10.66532 -10.48766 -10.38458 -10.25296 -10.14320 -9.94387 -9.81407 -9.57441 -9.11543 -8.66742 -8.27605 -7.01618 -5.92586 -3.92026 3.35208 3.42046 3.46360 4.47649 4.82787 4.91789 5.00902 5.10547 5.29372 5.40413 5.65893 5.78296 5.81934 5.89440 5.99671 6.03625 6.07715 6.13039 6.18017 6.27859 6.35032 6.41221 6.49693 6.57129 6.69722 6.73644 6.82436 6.89372 6.96875 7.01124 7.22485 7.33934 7.57008 7.76700 7.97661 8.32659 8.49480 8.73549 9.13730 9.70504 11.15833 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040462 B = 0.007617 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.832839 B = 3674.895715 C = 3774.197658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 N -0.523 5.523 4 C 0.211 3.789 5 H 0.034 0.966 6 C -0.173 4.173 7 C -0.489 4.489 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.898 5.898 11 Si 0.891 3.109 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.090 3.910 16 H 0.072 0.928 17 C -0.188 4.188 18 C -0.092 4.092 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.140 4.140 22 H 0.085 0.915 23 H 0.051 0.949 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.020 0.980 29 H 0.071 0.929 30 H 0.258 0.742 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 -6.848 -8.050 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.246 5.246 4 C 0.105 3.895 5 H 0.052 0.948 6 C -0.232 4.232 7 C -0.527 4.527 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.019 4.019 16 H 0.091 0.909 17 C -0.246 4.246 18 C -0.111 4.111 19 C -0.179 4.179 20 C -0.180 4.180 21 C -0.177 4.177 22 H 0.104 0.896 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.254 -6.475 -8.246 12.208 hybrid contribution -0.513 -0.032 0.825 0.972 sum 5.741 -6.507 -7.421 11.418 Atomic orbital electron populations 1.21996 0.95741 0.98553 1.04346 1.22065 0.95883 0.90720 0.98871 1.62521 1.11405 1.14977 1.35744 1.19303 0.97000 0.91529 0.81674 0.94829 1.22596 0.96861 0.99814 1.03929 1.21289 0.96635 1.30900 1.03918 0.91388 1.24952 0.97387 0.96400 0.95879 1.69934 1.35316 1.40013 1.08560 0.86611 0.85303 0.78188 0.77987 1.20953 1.21495 1.19913 1.21567 0.89657 0.97940 0.92775 0.90933 1.22810 1.00038 1.00893 1.00846 1.22549 0.95813 0.95841 0.96917 1.23158 0.98286 0.97544 0.98922 1.22829 0.99015 0.98112 0.98073 1.22976 0.97751 0.97729 0.99283 0.89644 0.93032 0.95275 0.92814 0.94875 0.94527 0.96177 0.91049 0.93261 0.92057 0.93408 0.92211 0.88893 0.89868 0.91957 0.90736 0.92248 0.92006 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.41 37.16 0.31 -2.60 16 2 C 0.05 1.00 3.77 -3.82 -0.01 0.99 16 3 N -0.52 -10.97 4.34 -220.11 -0.95 -11.93 16 4 C 0.21 5.21 2.13 -68.87 -0.15 5.07 16 5 H 0.03 0.93 7.49 -51.93 -0.39 0.54 16 6 C -0.17 -4.10 7.48 37.16 0.28 -3.82 16 7 C -0.49 -13.19 6.57 -34.44 -0.23 -13.42 16 8 H 0.07 1.84 6.15 -52.48 -0.32 1.52 16 9 C 0.05 1.49 5.33 -17.82 -0.09 1.40 16 10 N -0.90 -25.81 11.76 55.43 0.65 -25.16 16 11 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.09 1.61 2.47 -67.72 -0.17 1.44 16 16 H 0.07 1.40 7.59 -51.93 -0.39 1.01 16 17 C -0.19 -3.04 6.31 37.16 0.23 -2.81 16 18 C -0.09 -1.39 3.60 -89.81 -0.32 -1.72 16 19 C -0.14 -1.88 5.36 -25.83 -0.14 -2.02 16 20 C -0.14 -1.65 8.09 -25.83 -0.21 -1.86 16 21 C -0.14 -1.77 7.39 -25.92 -0.19 -1.96 16 22 H 0.08 1.91 5.00 -51.93 -0.26 1.65 16 23 H 0.05 1.02 7.89 -51.93 -0.41 0.61 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.92 5.05 -51.93 -0.26 0.66 16 26 H 0.03 0.65 4.36 -51.93 -0.23 0.42 16 27 H 0.04 0.85 5.71 -51.93 -0.30 0.55 16 28 H 0.02 0.42 4.43 -51.93 -0.23 0.19 16 29 H 0.07 1.88 6.64 -51.93 -0.34 1.54 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.06 0.99 4.81 -51.93 -0.25 0.74 16 32 H 0.05 0.67 5.99 -51.93 -0.31 0.36 16 33 H 0.06 1.05 6.15 -51.93 -0.32 0.73 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.11 5.63 -51.93 -0.29 0.81 16 36 H 0.06 0.83 7.58 -51.93 -0.39 0.43 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.08 0.98 6.70 -51.93 -0.35 0.63 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -27.48 280.07 -8.09 -35.57 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.30 Total: 2.09 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -0.69 Total: -21.31 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.30 Total: -37.09 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.48 -8.09 -35.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325671669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.926 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds