Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46996 * 2 1 4 4 C 1.46897 * 111.00056 * 69.30759 * 3 2 1 5 5 H 1.08999 * 109.47172 * 157.35620 * 4 3 2 6 6 C 1.52998 * 109.47153 * 37.35725 * 4 3 2 7 7 C 1.50696 * 109.47184 * 277.35902 * 4 3 2 8 8 H 1.08005 * 120.00166 * 4.99509 * 7 4 3 9 9 C 1.37875 * 120.00468 * 184.99648 * 7 4 3 10 10 N 1.31516 * 119.99777 * 359.97438 * 9 7 4 11 11 Si 1.86797 * 120.00420 * 180.02562 * 9 7 4 12 12 H 1.48497 * 109.47276 * 89.99605 * 11 9 7 13 13 H 1.48502 * 109.47155 * 209.99870 * 11 9 7 14 14 H 1.48499 * 109.46926 * 329.99564 * 11 9 7 15 15 C 1.46895 * 110.99776 * 193.26049 * 3 2 1 16 16 H 1.08996 * 109.47357 * 193.52821 * 15 3 2 17 17 C 1.52999 * 109.47118 * 313.52608 * 15 3 2 18 18 C 1.52998 * 109.47534 * 73.52610 * 15 3 2 19 19 C 1.53779 * 113.61583 * 272.23905 * 18 15 3 20 20 C 1.53949 * 87.02250 * 220.04354 * 19 18 15 21 21 C 1.53775 * 113.61854 * 174.63034 * 18 15 3 22 22 H 1.09001 * 109.47158 * 295.19859 * 1 2 3 23 23 H 1.08997 * 109.47227 * 55.19599 * 1 2 3 24 24 H 1.09002 * 109.47226 * 175.20102 * 1 2 3 25 25 H 1.09002 * 109.46980 * 240.00340 * 2 1 3 26 26 H 1.09002 * 109.47138 * 120.00026 * 2 1 3 27 27 H 1.09001 * 109.47318 * 293.46505 * 6 4 3 28 28 H 1.09003 * 109.47133 * 53.46620 * 6 4 3 29 29 H 1.09003 * 109.47077 * 173.46683 * 6 4 3 30 30 H 0.97002 * 119.99971 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.47502 * 43.17703 * 17 15 3 32 32 H 1.09005 * 109.47152 * 163.18230 * 17 15 3 33 33 H 1.09003 * 109.47434 * 283.17744 * 17 15 3 34 34 H 1.09004 * 112.84878 * 43.42987 * 18 15 3 35 35 H 1.09004 * 113.61341 * 334.56145 * 19 18 15 36 36 H 1.09006 * 113.61805 * 105.46736 * 19 18 15 37 37 H 1.09000 * 113.53926 * 270.81204 * 20 19 18 38 38 H 1.09001 * 113.74542 * 139.94033 * 20 19 18 39 39 H 1.09008 * 113.61389 * 254.52976 * 21 18 15 40 40 H 1.09000 * 113.61643 * 25.34640 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7382 2.0429 1.2829 5 1 2.4259 2.8770 1.4221 6 6 1.9188 1.0376 2.4220 7 6 0.3209 2.5547 1.2848 8 1 -0.3332 2.3365 0.4534 9 6 -0.1411 3.3016 2.3476 10 7 0.6551 3.5670 3.3602 11 14 -1.8983 3.9355 2.3502 12 1 -2.7856 2.9318 2.9908 13 1 -1.9636 5.2101 3.1093 14 1 -2.3425 4.1684 0.9525 15 6 3.4536 1.4364 -0.3146 16 1 3.8426 2.4263 -0.0763 17 6 4.1952 0.3843 0.5126 18 6 3.6596 1.1524 -1.8038 19 6 3.7984 -0.3435 -2.1322 20 6 4.8970 0.0602 -3.1322 21 6 5.1179 1.3110 -2.2652 22 1 -0.3633 0.4375 0.9299 23 1 -0.3633 0.5865 -0.8438 24 1 -0.3634 -1.0241 -0.0860 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.1548 0.2637 2.3482 28 1 2.9062 0.5813 2.3508 29 1 1.8242 1.5515 3.3786 30 1 0.3300 4.0922 4.1081 31 1 3.6281 -0.5465 0.5092 32 1 5.1808 0.2110 0.0805 33 1 4.3051 0.7391 1.5374 34 1 2.9420 1.6737 -2.4373 35 1 4.1656 -0.9415 -1.2980 36 1 2.9134 -0.7711 -2.6036 37 1 4.5176 0.2818 -4.1297 38 1 5.7499 -0.6185 -3.1449 39 1 5.2967 2.2173 -2.8439 40 1 5.8464 1.1677 -1.4672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325671669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = 14.660732 kcal Electronic energy + Delta-G solvation = -17023.080327 eV Core-core repulsion = 14645.291431 eV Total energy + Delta-G solvation = -2377.788897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96294 -38.41934 -34.77326 -32.49140 -31.25954 -28.93494 -27.41689 -26.63080 -26.11784 -23.89954 -22.48279 -20.18050 -19.45947 -18.36898 -16.99880 -16.91648 -16.07863 -15.85054 -15.47482 -15.16261 -14.41072 -13.92349 -13.61626 -13.43293 -13.21375 -13.04307 -12.82426 -12.81503 -12.62581 -12.46198 -12.33257 -12.09060 -12.00776 -11.85266 -11.72478 -11.38127 -11.18376 -10.85962 -10.78743 -10.46450 -10.39328 -8.69659 -8.03961 -6.09883 1.41881 1.43162 1.53299 2.46365 3.24662 3.42233 3.82697 3.92251 4.01392 4.09549 4.39364 4.43324 4.47837 4.58637 4.72764 4.78249 4.82424 4.89787 4.92283 4.95875 5.02506 5.09849 5.11820 5.12425 5.17336 5.27156 5.29713 5.35106 5.45580 5.48410 5.59005 5.69277 5.77664 5.85520 5.88264 6.35897 6.70584 6.90836 7.03132 7.56693 9.02971 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040462 B = 0.007617 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.832839 B = 3674.895715 C = 3774.197658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.535 5.535 4 C 0.219 3.781 5 H -0.006 1.006 6 C -0.157 4.157 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.005 3.995 10 N -0.928 5.928 11 Si 0.950 3.050 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.087 3.913 16 H 0.047 0.953 17 C -0.178 4.178 18 C -0.099 4.099 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.135 4.135 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.257 0.743 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 -8.414 -9.595 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.259 5.259 4 C 0.112 3.888 5 H 0.012 0.988 6 C -0.216 4.216 7 C -0.534 4.534 8 H 0.082 0.918 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.777 3.223 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.195 1.195 15 C -0.022 4.022 16 H 0.065 0.935 17 C -0.236 4.236 18 C -0.118 4.118 19 C -0.177 4.177 20 C -0.166 4.166 21 C -0.173 4.173 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.681 -8.053 -9.809 14.342 hybrid contribution -0.610 0.457 1.264 1.476 sum 6.071 -7.596 -8.545 12.945 Atomic orbital electron populations 1.21913 0.96114 1.00017 1.02180 1.22116 0.95565 0.89605 0.99957 1.62438 1.13875 1.16222 1.33315 1.19011 0.94942 0.90928 0.83935 0.98801 1.22404 0.98181 0.99235 1.01809 1.21576 0.97674 1.30599 1.03544 0.91827 1.25682 1.00991 0.96888 0.95708 1.70067 1.36926 1.40833 1.09110 0.85667 0.81056 0.77581 0.78001 1.20282 1.21422 1.19483 1.21627 0.87905 0.97397 0.95265 0.93471 1.22684 1.01377 1.00109 0.99433 1.22519 0.97389 0.97719 0.94200 1.23152 0.99167 0.95699 0.99642 1.22770 0.98843 0.97263 0.97751 1.22978 0.95768 0.98880 0.99687 0.92845 0.93798 0.92230 0.90183 0.95038 0.94392 0.93927 0.94188 0.93426 0.91522 0.90655 0.94176 0.90489 0.89452 0.91817 0.89910 0.90379 0.91567 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 8.41 71.98 0.61 -4.89 16 2 C 0.06 2.02 3.77 86.30 0.33 2.35 16 3 N -0.54 -22.49 4.34 -850.30 -3.69 -26.18 16 4 C 0.22 11.12 2.13 44.17 0.09 11.22 16 5 H -0.01 -0.35 7.49 -2.39 -0.02 -0.36 16 6 C -0.16 -7.58 7.48 71.98 0.54 -7.05 16 7 C -0.50 -27.33 6.57 25.60 0.17 -27.16 16 8 H 0.06 3.50 6.15 -2.91 -0.02 3.48 16 9 C 0.00 0.25 5.33 84.65 0.45 0.70 16 10 N -0.93 -54.88 11.76 21.45 0.25 -54.62 16 11 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 15 C 0.09 3.08 2.47 44.92 0.11 3.19 16 16 H 0.05 1.88 7.59 -2.39 -0.02 1.86 16 17 C -0.18 -5.49 6.31 71.98 0.45 -5.03 16 18 C -0.10 -2.84 3.60 -10.27 -0.04 -2.88 16 19 C -0.14 -3.25 5.36 31.18 0.17 -3.08 16 20 C -0.13 -2.50 8.09 31.18 0.25 -2.24 16 21 C -0.14 -3.08 7.39 31.12 0.23 -2.85 16 22 H 0.05 2.38 5.00 -2.39 -0.01 2.36 16 23 H 0.04 1.70 7.89 -2.39 -0.02 1.68 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 2.53 5.05 -2.39 -0.01 2.51 16 26 H 0.03 1.18 4.36 -2.39 -0.01 1.17 16 27 H 0.04 1.77 5.71 -2.39 -0.01 1.76 16 28 H 0.04 1.81 4.43 -2.39 -0.01 1.80 16 29 H 0.04 2.16 6.64 -2.39 -0.02 2.14 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.07 1.99 4.81 -2.39 -0.01 1.98 16 32 H 0.07 1.90 5.99 -2.38 -0.01 1.89 16 33 H 0.04 1.38 6.15 -2.39 -0.01 1.37 16 34 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.09 1.98 5.63 -2.38 -0.01 1.97 16 36 H 0.06 1.48 7.58 -2.38 -0.02 1.46 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.08 1.83 6.70 -2.39 -0.02 1.81 16 Total: -1.00 -60.04 280.07 2.97 -57.07 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.02 Total: 14.62 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 3.36 Total: -37.72 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -3.44 Total: -80.80 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -60.04 2.97 -57.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325671669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.735 kcal (2) G-P(sol) polarization free energy of solvation -60.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds