Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46892 * 109.47326 * 2 1 4 4 C 1.46898 * 111.00328 * 293.12911 * 3 2 1 5 5 H 1.09004 * 109.47568 * 194.83087 * 4 3 2 6 6 C 1.53008 * 109.47118 * 314.82948 * 4 3 2 7 7 C 1.50701 * 109.47478 * 74.82821 * 4 3 2 8 8 H 1.08005 * 119.99606 * 359.49904 * 7 4 3 9 9 C 1.37870 * 120.00195 * 179.49761 * 7 4 3 10 10 N 1.31517 * 120.00137 * 180.02562 * 9 7 4 11 11 Si 1.86800 * 120.00251 * 0.02562 * 9 7 4 12 12 H 1.48506 * 109.46655 * 90.00041 * 11 9 7 13 13 H 1.48501 * 109.47314 * 209.99819 * 11 9 7 14 14 H 1.48499 * 109.47031 * 330.00497 * 11 9 7 15 15 C 1.46904 * 111.00102 * 169.17353 * 3 2 1 16 16 H 1.09001 * 109.46962 * 62.15641 * 15 3 2 17 17 C 1.53002 * 109.47046 * 182.15156 * 15 3 2 18 18 C 1.53001 * 109.47088 * 302.15184 * 15 3 2 19 19 C 1.53778 * 113.61509 * 181.32946 * 18 15 3 20 20 C 1.53776 * 87.07996 * 140.06796 * 19 18 15 21 21 C 1.53778 * 87.17384 * 334.52457 * 20 19 18 22 22 H 1.08998 * 109.47066 * 311.40459 * 1 2 3 23 23 H 1.09002 * 109.46866 * 71.40188 * 1 2 3 24 24 H 1.08996 * 109.47189 * 191.40332 * 1 2 3 25 25 H 1.09002 * 109.46987 * 240.00131 * 2 1 3 26 26 H 1.09003 * 109.47377 * 120.00580 * 2 1 3 27 27 H 1.09001 * 109.47182 * 300.00314 * 6 4 3 28 28 H 1.09004 * 109.46787 * 59.99661 * 6 4 3 29 29 H 1.08996 * 109.46914 * 180.02562 * 6 4 3 30 30 H 0.96997 * 120.00500 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.47376 * 289.81203 * 17 15 3 32 32 H 1.09003 * 109.46826 * 49.81883 * 17 15 3 33 33 H 1.09004 * 109.46797 * 169.81213 * 17 15 3 34 34 H 1.09002 * 112.84733 * 50.13499 * 18 15 3 35 35 H 1.08997 * 113.61099 * 25.51726 * 19 18 15 36 36 H 1.09004 * 113.61377 * 254.62038 * 19 18 15 37 37 H 1.08996 * 113.61465 * 89.11783 * 20 19 18 38 38 H 1.09005 * 113.61461 * 219.93818 * 20 19 18 39 39 H 1.09000 * 113.61555 * 140.02485 * 21 20 19 40 40 H 1.09000 * 113.61951 * 270.92759 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6873 2.0609 -1.2611 5 1 2.2742 2.9752 -1.3490 6 6 2.0075 1.1345 -2.4361 7 6 0.2197 2.4026 -1.2764 8 1 -0.4055 2.1363 -0.4369 9 6 -0.3249 3.0552 -2.3619 10 7 -1.6057 3.3539 -2.3750 11 14 0.7562 3.5152 -3.8142 12 1 0.7611 2.4038 -4.7991 13 1 0.2252 4.7440 -4.4570 14 1 2.1417 3.7633 -3.3408 15 6 3.4652 1.4322 0.2576 16 1 3.9935 0.9082 -0.5389 17 6 3.9277 2.8899 0.3032 18 6 3.7666 0.7594 1.5983 19 6 5.2563 0.7843 1.9789 20 6 4.8025 1.0702 3.4200 21 6 3.5211 1.6694 2.8167 22 1 -0.3633 0.6797 0.7708 23 1 -0.3633 0.3278 -0.9740 24 1 -0.3633 -1.0073 0.2032 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.0690 0.8873 -2.4251 28 1 1.4206 0.2202 -2.3482 29 1 1.7613 1.6363 -3.3719 30 1 -1.9888 3.8134 -3.1385 31 1 3.8815 3.3173 -0.6984 32 1 3.2780 3.4565 0.9703 33 1 4.9530 2.9345 0.6704 34 1 3.3090 -0.2257 1.6898 35 1 5.8094 1.6060 1.5241 36 1 5.7534 -0.1786 1.8605 37 1 4.6281 0.1702 4.0096 38 1 5.4247 1.8009 3.9369 39 1 2.6182 1.4207 3.3744 40 1 3.6007 2.7327 2.5906 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325671670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = 39.000803 kcal Electronic energy + Delta-G solvation = -17035.528378 eV Core-core repulsion = 14658.794946 eV Total energy + Delta-G solvation = -2376.733432 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.53625 -37.11497 -32.70124 -31.43779 -30.20009 -27.30265 -25.76898 -25.30422 -25.05700 -21.75227 -21.30143 -19.11292 -17.84144 -16.95863 -15.71353 -15.55326 -14.73192 -14.31685 -13.97357 -13.35615 -13.05357 -12.62998 -12.33744 -12.19853 -12.06067 -11.95139 -11.46346 -11.17908 -11.01341 -10.94071 -10.83114 -10.63714 -10.53172 -10.26803 -9.98053 -9.90292 -9.68905 -9.57138 -9.23306 -8.75325 -8.45103 -7.19360 -5.98735 -3.93042 3.28458 3.39028 3.41040 4.45295 4.61175 4.87069 4.95032 5.04285 5.25704 5.33007 5.57715 5.59966 5.81464 5.86308 5.88338 5.96519 6.03432 6.08502 6.17886 6.23494 6.29658 6.31834 6.34586 6.43370 6.46579 6.52398 6.61841 6.67099 6.73631 6.87472 6.88172 7.07191 7.24780 7.54849 7.77455 8.07952 8.23177 8.77279 9.12628 9.63949 11.13507 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.008614 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.655449 B = 3249.631180 C = 3510.929912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.512 5.512 4 C 0.175 3.825 5 H 0.042 0.958 6 C -0.187 4.187 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.066 3.934 10 N -0.902 5.902 11 Si 0.880 3.120 12 H -0.283 1.283 13 H -0.298 1.298 14 H -0.270 1.270 15 C 0.087 3.913 16 H 0.028 0.972 17 C -0.146 4.146 18 C -0.103 4.103 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.126 4.126 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.053 0.947 27 H 0.024 0.976 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.644 -5.018 6.749 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.235 5.235 4 C 0.067 3.933 5 H 0.060 0.940 6 C -0.245 4.245 7 C -0.533 4.533 8 H 0.113 0.887 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.711 3.289 12 H -0.210 1.210 13 H -0.226 1.226 14 H -0.196 1.196 15 C -0.022 4.022 16 H 0.045 0.955 17 C -0.203 4.203 18 C -0.121 4.121 19 C -0.178 4.178 20 C -0.183 4.183 21 C -0.164 4.164 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.255 -4.673 7.032 14.070 hybrid contribution 0.935 -0.227 -1.726 1.976 sum 12.190 -4.900 5.306 14.169 Atomic orbital electron populations 1.22086 0.94505 0.98343 1.05265 1.22036 0.96931 0.89820 0.98471 1.62305 1.10311 1.14869 1.36063 1.19883 0.98111 0.92317 0.82955 0.93996 1.22837 0.98035 1.02261 1.01381 1.21273 0.91645 1.35707 1.04676 0.88699 1.24920 0.94714 0.95751 0.98042 1.69872 1.11349 1.42027 1.30923 0.86986 0.81260 0.77037 0.83620 1.21013 1.22601 1.19568 1.21422 0.90295 0.95659 0.94776 0.95452 1.21989 0.99811 0.96374 1.02106 1.22683 0.95150 0.99472 0.94796 1.23027 0.96781 1.01343 0.96682 1.22827 0.98610 1.00667 0.96177 1.22952 0.96871 1.00133 0.96411 0.92258 0.89198 0.95569 0.95597 0.92853 0.95693 0.92148 0.93905 0.92837 0.92793 0.91219 0.93082 0.89385 0.90026 0.92290 0.90855 0.92092 0.91824 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.27 37.16 0.31 -2.62 16 2 C 0.06 1.04 4.99 -3.83 -0.02 1.02 16 3 N -0.51 -10.34 4.34 -220.09 -0.96 -11.30 16 4 C 0.17 4.06 1.69 -68.86 -0.12 3.95 16 5 H 0.04 1.02 4.70 -51.93 -0.24 0.78 16 6 C -0.19 -4.11 7.73 37.16 0.29 -3.82 16 7 C -0.49 -13.42 6.90 -34.44 -0.24 -13.66 16 8 H 0.10 2.77 5.59 -52.48 -0.29 2.48 16 9 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 10 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 11 Si 0.88 21.98 24.39 -169.99 -4.15 17.84 16 12 H -0.28 -6.97 6.87 56.52 0.39 -6.58 16 13 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.27 -6.51 6.52 56.52 0.37 -6.14 16 15 C 0.09 1.49 2.08 -67.71 -0.14 1.35 16 16 H 0.03 0.48 7.10 -51.93 -0.37 0.12 16 17 C -0.15 -2.37 7.48 37.16 0.28 -2.09 16 18 C -0.10 -1.47 3.43 -89.67 -0.31 -1.78 16 19 C -0.14 -1.68 7.44 -25.92 -0.19 -1.87 16 20 C -0.15 -1.64 8.07 -25.92 -0.21 -1.85 16 21 C -0.13 -1.72 7.37 -25.78 -0.19 -1.91 16 22 H 0.06 1.27 7.31 -51.93 -0.38 0.89 16 23 H 0.09 2.11 5.48 -51.93 -0.28 1.82 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.49 5.75 -51.93 -0.30 0.19 16 26 H 0.05 0.90 5.61 -51.93 -0.29 0.61 16 27 H 0.02 0.49 7.12 -51.93 -0.37 0.12 16 28 H 0.06 1.30 5.68 -51.93 -0.29 1.01 16 29 H 0.04 0.99 3.33 -51.93 -0.17 0.82 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 31 H 0.05 0.95 6.57 -51.93 -0.34 0.61 16 32 H 0.07 1.18 6.75 -51.93 -0.35 0.83 16 33 H 0.05 0.69 6.07 -51.93 -0.32 0.37 16 34 H 0.09 1.28 5.93 -51.93 -0.31 0.97 16 35 H 0.08 0.96 6.21 -51.93 -0.32 0.63 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.23 5.75 -51.93 -0.30 0.93 16 LS Contribution 278.08 15.07 4.19 4.19 Total: -1.00 -28.47 278.08 -7.01 -35.48 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.23 Total: 1.79 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -0.64 Total: -21.50 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.18 Total: -37.80 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.47 -7.01 -35.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325671670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.477 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds