Wall clock time and date at job start Mon Mar 30 2020 03:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46847 * 2 1 4 4 C 1.46897 * 110.99721 * 163.89651 * 3 2 1 5 5 H 1.08999 * 109.46771 * 172.80951 * 4 3 2 6 6 C 1.52996 * 109.47606 * 52.80891 * 4 3 2 7 7 C 1.53003 * 109.47171 * 292.80707 * 4 3 2 8 8 C 1.53781 * 113.61538 * 180.02562 * 7 4 3 9 9 C 1.53776 * 87.08440 * 139.98098 * 8 7 4 10 10 C 1.53779 * 113.61394 * 277.49718 * 7 4 3 11 11 C 1.46900 * 111.00285 * 287.85175 * 3 2 1 12 12 H 1.08995 * 109.47178 * 203.59814 * 11 3 2 13 13 C 1.52995 * 109.46916 * 323.59412 * 11 3 2 14 14 C 1.50702 * 109.47269 * 83.59281 * 11 3 2 15 15 H 1.08003 * 119.99633 * 354.55776 * 14 11 3 16 16 C 1.37878 * 119.99804 * 174.55673 * 14 11 3 17 17 N 1.31506 * 120.00177 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99717 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47003 * 60.00122 * 18 16 14 20 20 H 1.48500 * 109.47200 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47286 * 300.00233 * 18 16 14 22 22 H 1.09006 * 109.46929 * 187.55738 * 1 2 3 23 23 H 1.09002 * 109.47102 * 307.54987 * 1 2 3 24 24 H 1.08997 * 109.47364 * 67.55598 * 1 2 3 25 25 H 1.08998 * 109.47102 * 240.00362 * 2 1 3 26 26 H 1.08993 * 109.47001 * 120.00300 * 2 1 3 27 27 H 1.08998 * 109.47722 * 193.38371 * 6 4 3 28 28 H 1.09003 * 109.46629 * 313.39040 * 6 4 3 29 29 H 1.09006 * 109.47099 * 73.37810 * 6 4 3 30 30 H 1.08994 * 112.90540 * 48.75013 * 7 4 3 31 31 H 1.09003 * 113.61618 * 25.43140 * 8 7 4 32 32 H 1.09003 * 113.61480 * 254.53547 * 8 7 4 33 33 H 1.09002 * 113.61588 * 89.11563 * 9 8 7 34 34 H 1.09000 * 113.61773 * 220.02069 * 9 8 7 35 35 H 1.09007 * 113.61198 * 105.47238 * 10 7 4 36 36 H 1.08994 * 113.69365 * 334.57919 * 10 7 4 37 37 H 1.09005 * 109.47534 * 189.16593 * 13 11 3 38 38 H 1.09000 * 109.47702 * 309.16729 * 13 11 3 39 39 H 1.09002 * 109.47685 * 69.16463 * 13 11 3 40 40 H 0.96998 * 120.00098 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4373 1.4421 0.3804 5 1 3.8079 2.4588 0.2495 6 6 4.2418 0.4882 -0.5048 7 6 3.5893 1.0286 1.8456 8 6 5.0433 1.0554 2.3457 9 6 4.4979 1.6392 3.6596 10 6 3.3099 2.1682 2.8395 11 6 1.7987 2.0215 -1.3054 12 1 2.5038 2.8428 -1.4331 13 6 2.0089 0.9916 -2.4170 14 6 0.3903 2.5534 -1.3730 15 1 -0.3012 2.3547 -0.5676 16 6 -0.0154 3.2936 -2.4632 17 7 0.8265 3.5351 -3.4442 18 14 -1.7614 3.9523 -2.5474 19 1 -2.0075 4.8515 -1.3915 20 1 -1.9441 4.7103 -3.8112 21 1 -2.7204 2.8192 -2.5061 22 1 -0.3633 -1.0188 0.1352 23 1 -0.3633 0.6263 0.8148 24 1 -0.3634 0.3923 -0.9498 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.2354 0.3481 -0.0790 28 1 3.7313 -0.4732 -0.5605 29 1 4.3318 0.9103 -1.5058 30 1 3.0629 0.1039 2.0822 31 1 5.6823 1.7447 1.7936 32 1 5.4849 0.0652 2.4578 33 1 4.2202 0.8813 4.3921 34 1 5.1231 2.4268 4.0802 35 1 2.3514 2.0766 3.3507 36 1 3.4745 3.1622 2.4237 37 1 2.0062 1.4948 -3.3840 38 1 2.9654 0.4896 -2.2713 39 1 1.2047 0.2563 -2.3880 40 1 0.5412 4.0562 -4.2110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325671671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:54 Heat of formation + Delta-G solvation = 25.542237 kcal Electronic energy + Delta-G solvation = -16937.284746 eV Core-core repulsion = 14559.967707 eV Total energy + Delta-G solvation = -2377.317039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32842 -37.06404 -32.83241 -31.08218 -29.46097 -27.41453 -25.46497 -25.21039 -24.63198 -22.37855 -20.73310 -19.04878 -18.25452 -16.37382 -15.51454 -14.96296 -14.60745 -14.24655 -13.97493 -13.34773 -12.78949 -12.39684 -12.14193 -12.11674 -11.76440 -11.64074 -11.40186 -11.06172 -10.92689 -10.83978 -10.65481 -10.49441 -10.36764 -10.24120 -10.04581 -9.94845 -9.84757 -9.55291 -9.18437 -8.67891 -8.27472 -7.00273 -5.91956 -3.91550 3.37404 3.41622 3.44820 4.47819 4.80922 4.95425 5.02571 5.15997 5.39064 5.45551 5.66676 5.76667 5.86897 5.93944 5.96938 6.05023 6.08984 6.14019 6.26555 6.31960 6.37600 6.44475 6.46683 6.58375 6.66159 6.70281 6.84470 6.90838 6.98668 6.99644 7.21742 7.29180 7.55868 7.75485 7.97981 8.32665 8.48770 8.73675 9.14147 9.71198 11.16625 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.007935 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.560207 B = 3528.001420 C = 3643.464427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.522 5.522 4 C 0.092 3.908 5 H 0.072 0.928 6 C -0.186 4.186 7 C -0.096 4.096 8 C -0.136 4.136 9 C -0.147 4.147 10 C -0.122 4.122 11 C 0.213 3.787 12 H 0.034 0.966 13 C -0.174 4.174 14 C -0.489 4.489 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.279 1.279 22 H 0.029 0.971 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.035 0.965 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -5.624 8.697 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 N -0.245 5.245 4 C -0.017 4.017 5 H 0.091 0.909 6 C -0.245 4.245 7 C -0.115 4.115 8 C -0.174 4.174 9 C -0.184 4.184 10 C -0.160 4.160 11 C 0.107 3.893 12 H 0.051 0.949 13 C -0.232 4.232 14 C -0.527 4.527 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.720 3.280 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.205 1.205 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.655 -5.250 8.867 11.754 hybrid contribution -0.478 -0.062 -0.846 0.973 sum 5.177 -5.312 8.021 10.925 Atomic orbital electron populations 1.21911 0.95617 0.98534 1.04153 1.22000 0.95992 0.90792 0.98619 1.62506 1.13360 1.15394 1.33255 1.21677 0.89564 0.98162 0.92345 0.90932 1.22715 0.99864 1.00884 1.01011 1.22557 0.95215 0.98920 0.94763 1.22926 0.97037 1.00501 0.96963 1.22848 0.98810 1.00260 0.96517 1.22778 0.97533 0.98724 0.96959 1.19266 0.97177 0.91606 0.81281 0.94857 1.22628 0.97162 0.99724 1.03719 1.21230 0.96536 1.31133 1.03848 0.91514 1.24945 0.97186 0.96445 0.95996 1.69921 1.34693 1.40402 1.08840 0.86673 0.85295 0.79035 0.77036 1.20386 1.21608 1.20451 0.95188 0.92887 0.90106 0.94617 0.93542 0.93560 0.92651 0.91911 0.89692 0.90391 0.92297 0.90867 0.92133 0.91844 0.90223 0.91282 0.95846 0.94557 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.49 37.16 0.32 -2.49 16 2 C 0.05 1.03 3.94 -3.82 -0.02 1.02 16 3 N -0.52 -10.89 4.36 -220.11 -0.96 -11.85 16 4 C 0.09 1.64 2.08 -67.71 -0.14 1.50 16 5 H 0.07 1.39 7.56 -51.93 -0.39 1.00 16 6 C -0.19 -3.08 7.55 37.16 0.28 -2.80 16 7 C -0.10 -1.44 3.14 -89.81 -0.28 -1.72 16 8 C -0.14 -1.72 6.47 -25.92 -0.17 -1.89 16 9 C -0.15 -1.76 8.08 -25.94 -0.21 -1.97 16 10 C -0.12 -1.77 7.63 -25.94 -0.20 -1.97 16 11 C 0.21 5.24 2.02 -68.87 -0.14 5.10 16 12 H 0.03 0.92 7.58 -51.93 -0.39 0.53 16 13 C -0.17 -4.09 7.30 37.16 0.27 -3.82 16 14 C -0.49 -13.18 6.73 -34.44 -0.23 -13.41 16 15 H 0.07 1.81 6.23 -52.48 -0.33 1.48 16 16 C 0.05 1.51 5.33 -17.82 -0.10 1.41 16 17 N -0.90 -25.82 11.83 55.43 0.66 -25.17 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 24 H 0.08 1.79 5.32 -51.93 -0.28 1.51 16 25 H 0.04 0.70 4.39 -51.93 -0.23 0.47 16 26 H 0.05 0.80 5.98 -51.93 -0.31 0.49 16 27 H 0.05 0.66 7.04 -51.93 -0.37 0.30 16 28 H 0.05 0.92 5.82 -51.93 -0.30 0.61 16 29 H 0.06 1.14 6.19 -51.93 -0.32 0.81 16 30 H 0.08 1.30 6.27 -51.93 -0.33 0.97 16 31 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.22 7.97 -51.93 -0.41 0.80 16 37 H 0.07 1.81 6.76 -51.93 -0.35 1.46 16 38 H 0.02 0.49 4.13 -51.93 -0.21 0.27 16 39 H 0.04 0.85 5.94 -51.93 -0.31 0.54 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -27.42 288.05 -8.21 -35.63 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.61 Total: 1.55 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -0.61 Total: -21.05 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.30 Total: -37.02 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.42 -8.21 -35.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325671671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.171 kcal (2) G-P(sol) polarization free energy of solvation -27.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds