Wall clock time and date at job start Mon Mar 30 2020 03:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46847 * 2 1 4 4 C 1.46897 * 110.99721 * 163.89651 * 3 2 1 5 5 H 1.08999 * 109.46771 * 172.80951 * 4 3 2 6 6 C 1.52996 * 109.47606 * 52.80891 * 4 3 2 7 7 C 1.53003 * 109.47171 * 292.80707 * 4 3 2 8 8 C 1.53781 * 113.61538 * 180.02562 * 7 4 3 9 9 C 1.53776 * 87.08440 * 139.98098 * 8 7 4 10 10 C 1.53779 * 113.61394 * 277.49718 * 7 4 3 11 11 C 1.46900 * 111.00285 * 287.85175 * 3 2 1 12 12 H 1.08995 * 109.47178 * 203.59814 * 11 3 2 13 13 C 1.52995 * 109.46916 * 323.59412 * 11 3 2 14 14 C 1.50702 * 109.47269 * 83.59281 * 11 3 2 15 15 H 1.08003 * 119.99633 * 354.55776 * 14 11 3 16 16 C 1.37878 * 119.99804 * 174.55673 * 14 11 3 17 17 N 1.31506 * 120.00177 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99717 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47003 * 60.00122 * 18 16 14 20 20 H 1.48500 * 109.47200 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47286 * 300.00233 * 18 16 14 22 22 H 1.09006 * 109.46929 * 187.55738 * 1 2 3 23 23 H 1.09002 * 109.47102 * 307.54987 * 1 2 3 24 24 H 1.08997 * 109.47364 * 67.55598 * 1 2 3 25 25 H 1.08998 * 109.47102 * 240.00362 * 2 1 3 26 26 H 1.08993 * 109.47001 * 120.00300 * 2 1 3 27 27 H 1.08998 * 109.47722 * 193.38371 * 6 4 3 28 28 H 1.09003 * 109.46629 * 313.39040 * 6 4 3 29 29 H 1.09006 * 109.47099 * 73.37810 * 6 4 3 30 30 H 1.08994 * 112.90540 * 48.75013 * 7 4 3 31 31 H 1.09003 * 113.61618 * 25.43140 * 8 7 4 32 32 H 1.09003 * 113.61480 * 254.53547 * 8 7 4 33 33 H 1.09002 * 113.61588 * 89.11563 * 9 8 7 34 34 H 1.09000 * 113.61773 * 220.02069 * 9 8 7 35 35 H 1.09007 * 113.61198 * 105.47238 * 10 7 4 36 36 H 1.08994 * 113.69365 * 334.57919 * 10 7 4 37 37 H 1.09005 * 109.47534 * 189.16593 * 13 11 3 38 38 H 1.09000 * 109.47702 * 309.16729 * 13 11 3 39 39 H 1.09002 * 109.47685 * 69.16463 * 13 11 3 40 40 H 0.96998 * 120.00098 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4373 1.4421 0.3804 5 1 3.8079 2.4588 0.2495 6 6 4.2418 0.4882 -0.5048 7 6 3.5893 1.0286 1.8456 8 6 5.0433 1.0554 2.3457 9 6 4.4979 1.6392 3.6596 10 6 3.3099 2.1682 2.8395 11 6 1.7987 2.0215 -1.3054 12 1 2.5038 2.8428 -1.4331 13 6 2.0089 0.9916 -2.4170 14 6 0.3903 2.5534 -1.3730 15 1 -0.3012 2.3547 -0.5676 16 6 -0.0154 3.2936 -2.4632 17 7 0.8265 3.5351 -3.4442 18 14 -1.7614 3.9523 -2.5474 19 1 -2.0075 4.8515 -1.3915 20 1 -1.9441 4.7103 -3.8112 21 1 -2.7204 2.8192 -2.5061 22 1 -0.3633 -1.0188 0.1352 23 1 -0.3633 0.6263 0.8148 24 1 -0.3634 0.3923 -0.9498 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.2354 0.3481 -0.0790 28 1 3.7313 -0.4732 -0.5605 29 1 4.3318 0.9103 -1.5058 30 1 3.0629 0.1039 2.0822 31 1 5.6823 1.7447 1.7936 32 1 5.4849 0.0652 2.4578 33 1 4.2202 0.8813 4.3921 34 1 5.1231 2.4268 4.0802 35 1 2.3514 2.0766 3.3507 36 1 3.4745 3.1622 2.4237 37 1 2.0062 1.4948 -3.3840 38 1 2.9654 0.4896 -2.2713 39 1 1.2047 0.2563 -2.3880 40 1 0.5412 4.0562 -4.2110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325671671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:53 Heat of formation + Delta-G solvation = 10.128106 kcal Electronic energy + Delta-G solvation = -16937.953153 eV Core-core repulsion = 14559.967707 eV Total energy + Delta-G solvation = -2377.985446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69977 -38.50304 -34.81403 -32.59054 -31.31250 -29.01103 -27.35487 -26.41672 -25.91734 -24.05593 -22.24876 -20.42918 -19.73924 -18.35155 -17.02275 -16.62282 -16.07392 -15.89848 -15.41130 -14.80634 -14.50942 -13.92698 -13.62774 -13.36514 -13.30963 -13.19186 -13.01765 -12.80015 -12.62815 -12.51752 -12.26301 -12.07490 -11.99674 -11.92027 -11.68577 -11.42343 -11.03621 -10.94191 -10.85472 -10.50692 -10.39519 -8.67983 -8.03418 -6.09570 1.42749 1.43975 1.51086 2.46503 3.25090 3.38640 3.83602 3.92297 4.02254 4.19025 4.35996 4.43399 4.48756 4.56676 4.74118 4.80307 4.82837 4.90212 4.92900 4.96147 4.99344 5.02369 5.12576 5.14159 5.20277 5.24104 5.30728 5.35322 5.40445 5.54826 5.56293 5.67306 5.77336 5.84854 5.87537 6.36078 6.70698 6.90409 7.03405 7.57228 9.03364 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.007935 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.560207 B = 3528.001420 C = 3643.464427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.055 3.945 3 N -0.533 5.533 4 C 0.090 3.910 5 H 0.049 0.951 6 C -0.178 4.178 7 C -0.097 4.097 8 C -0.128 4.128 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.222 3.778 12 H -0.006 1.006 13 C -0.157 4.157 14 C -0.495 4.495 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.271 1.271 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -7.070 10.412 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 N -0.256 5.256 4 C -0.019 4.019 5 H 0.067 0.933 6 C -0.237 4.237 7 C -0.115 4.115 8 C -0.166 4.166 9 C -0.169 4.169 10 C -0.170 4.170 11 C 0.114 3.886 12 H 0.012 0.988 13 C -0.216 4.216 14 C -0.534 4.534 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.776 3.224 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.197 1.197 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.019 -6.706 10.600 13.913 hybrid contribution -0.565 0.384 -1.338 1.503 sum 5.454 -6.322 9.262 12.470 Atomic orbital electron populations 1.21825 0.95874 1.00054 1.01948 1.22052 0.95778 0.89688 0.99712 1.62405 1.15789 1.16637 1.30750 1.21726 0.87886 0.97526 0.94780 0.93257 1.22595 1.01235 1.00249 0.99577 1.22562 0.97556 0.99048 0.92353 1.22891 0.95238 1.01627 0.96808 1.22791 0.97117 1.00664 0.96330 1.22802 0.98627 0.97918 0.97659 1.18963 0.94997 0.91000 0.83615 0.98804 1.22440 0.98393 0.99176 1.01624 1.21529 0.97578 1.30812 1.03482 0.91916 1.25675 1.00713 0.96992 0.95862 1.70057 1.36318 1.41234 1.09320 0.85739 0.81194 0.78534 0.76914 1.20081 1.21463 1.19652 0.92096 0.93660 0.93323 0.94906 0.90803 0.90827 0.92178 0.94120 0.89217 0.90520 0.90381 0.89277 0.90957 0.92478 0.91873 0.94426 0.93475 0.94630 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.49 71.98 0.61 -4.61 16 2 C 0.06 2.02 3.94 86.30 0.34 2.36 16 3 N -0.53 -22.18 4.36 -850.29 -3.70 -25.89 16 4 C 0.09 3.15 2.08 44.92 0.09 3.25 16 5 H 0.05 1.94 7.56 -2.39 -0.02 1.93 16 6 C -0.18 -5.63 7.55 71.98 0.54 -5.09 16 7 C -0.10 -2.70 3.14 -10.27 -0.03 -2.73 16 8 C -0.13 -2.81 6.47 31.12 0.20 -2.61 16 9 C -0.13 -2.74 8.08 31.11 0.25 -2.49 16 10 C -0.13 -3.66 7.63 31.11 0.24 -3.43 16 11 C 0.22 11.19 2.02 44.17 0.09 11.28 16 12 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 13 C -0.16 -7.57 7.30 71.98 0.53 -7.05 16 14 C -0.50 -27.29 6.73 25.60 0.17 -27.12 16 15 H 0.06 3.44 6.23 -2.91 -0.02 3.42 16 16 C 0.00 0.27 5.33 84.66 0.45 0.72 16 17 N -0.93 -54.90 11.83 21.45 0.25 -54.64 16 18 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 24 H 0.05 2.13 5.32 -2.39 -0.01 2.12 16 25 H 0.03 1.23 4.39 -2.39 -0.01 1.22 16 26 H 0.07 2.31 5.98 -2.39 -0.01 2.30 16 27 H 0.07 1.91 7.04 -2.39 -0.02 1.90 16 28 H 0.06 1.84 5.82 -2.39 -0.01 1.83 16 29 H 0.04 1.45 6.19 -2.38 -0.01 1.44 16 30 H 0.09 2.45 6.27 -2.39 -0.01 2.43 16 31 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.06 1.93 7.97 -2.39 -0.02 1.91 16 37 H 0.04 2.02 6.76 -2.38 -0.02 2.00 16 38 H 0.05 1.99 4.13 -2.39 -0.01 1.99 16 39 H 0.03 1.67 5.94 -2.39 -0.01 1.66 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -59.91 288.05 3.06 -56.84 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.00 Total: 14.33 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 3.48 Total: -37.51 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -3.45 Total: -80.53 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -59.91 3.06 -56.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325671671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.968 kcal (2) G-P(sol) polarization free energy of solvation -59.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds