Wall clock time and date at job start Mon Mar 30 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.46787 * 2 1 4 4 C 1.46901 * 111.00047 * 65.22986 * 3 2 1 5 5 C 1.52995 * 109.47666 * 66.04189 * 4 3 2 6 6 C 1.50698 * 109.47078 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00408 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99681 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00249 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99641 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46824 * 90.00384 * 10 8 6 12 12 H 1.48500 * 109.46948 * 210.00151 * 10 8 6 13 13 H 1.48501 * 109.47259 * 330.00440 * 10 8 6 14 14 C 1.46895 * 110.99986 * 301.26796 * 3 2 1 15 15 H 1.08998 * 109.47184 * 62.26631 * 14 3 2 16 16 C 1.53009 * 109.46986 * 182.26777 * 14 3 2 17 17 C 1.52999 * 109.47309 * 302.26753 * 14 3 2 18 18 C 1.53783 * 113.61420 * 279.11580 * 17 14 3 19 19 C 1.53950 * 87.01951 * 220.04682 * 18 17 14 20 20 C 1.53782 * 87.11264 * 25.36580 * 19 18 17 21 21 H 1.09000 * 109.47285 * 301.83550 * 1 2 3 22 22 H 1.08992 * 109.47194 * 61.83760 * 1 2 3 23 23 H 1.09001 * 109.47251 * 181.83910 * 1 2 3 24 24 H 1.08999 * 109.47457 * 239.99642 * 2 1 3 25 25 H 1.09001 * 109.46918 * 120.00227 * 2 1 3 26 26 H 1.09009 * 109.46653 * 306.03935 * 4 3 2 27 27 H 1.09001 * 109.47221 * 186.04617 * 4 3 2 28 28 H 1.09004 * 109.46717 * 299.99847 * 5 4 3 29 29 H 1.09001 * 109.47261 * 59.99774 * 5 4 3 30 30 H 0.96998 * 120.00228 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46813 * 292.38344 * 16 14 3 32 32 H 1.08999 * 109.46976 * 52.38248 * 16 14 3 33 33 H 1.08997 * 109.46874 * 172.38156 * 16 14 3 34 34 H 1.08997 * 112.84945 * 50.31320 * 17 14 3 35 35 H 1.08995 * 113.61468 * 334.57018 * 18 17 14 36 36 H 1.09001 * 113.61139 * 105.47041 * 18 17 14 37 37 H 1.09000 * 113.54064 * 270.80974 * 19 18 17 38 38 H 1.09000 * 113.74411 * 139.94544 * 19 18 17 39 39 H 1.08999 * 113.61282 * 220.09165 * 20 19 18 40 40 H 1.08994 * 113.61827 * 89.18150 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6533 2.0729 1.2453 5 6 2.3894 1.4266 2.4205 6 6 2.0130 2.1319 3.6980 7 1 1.3186 2.9588 3.6740 8 6 2.5552 1.7217 4.8975 9 7 3.4012 0.7152 4.9267 10 14 2.0893 2.5964 6.4809 11 1 0.8995 1.9385 7.0782 12 1 3.2242 2.5287 7.4362 13 1 1.7737 4.0175 6.1870 14 6 1.5239 2.1186 -1.1722 15 1 0.4356 2.1678 -1.1365 16 6 2.0991 3.5364 -1.1672 17 6 1.9601 1.3957 -2.4482 18 6 3.4090 1.7001 -2.8640 19 6 2.8989 1.7406 -4.3159 20 6 1.5208 2.1061 -3.7394 21 1 -0.3634 0.5421 0.8731 22 1 -0.3633 0.4850 -0.9059 23 1 -0.3634 -1.0271 0.0330 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 0.5775 1.9925 1.4018 27 1 1.9327 3.1242 1.1754 28 1 2.1098 0.3753 2.4904 29 1 3.4651 1.5069 2.2640 30 1 3.7829 0.4268 5.7705 31 1 1.6809 4.0952 -0.3301 32 1 3.1834 3.4882 -1.0665 33 1 1.8429 4.0357 -2.1017 34 1 1.7244 0.3316 -2.4334 35 1 3.7742 2.6613 -2.5025 36 1 4.1011 0.8816 -2.6661 37 1 2.9212 0.7705 -4.8124 38 1 3.3453 2.5335 -4.9160 39 1 0.6909 1.6149 -4.2473 40 1 1.3689 3.1785 -3.6177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325715066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:08 Heat of formation + Delta-G solvation = 12.923251 kcal Electronic energy + Delta-G solvation = -16367.670859 eV Core-core repulsion = 13989.806619 eV Total energy + Delta-G solvation = -2377.864239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68232 -36.94157 -33.08289 -31.41205 -30.28700 -27.48187 -25.92481 -25.50135 -23.97709 -22.79174 -21.04766 -19.24443 -17.98042 -16.48784 -15.82537 -15.48725 -15.03805 -14.46015 -14.26332 -13.80223 -13.01439 -12.80146 -12.41910 -12.27868 -12.16336 -11.84225 -11.56662 -11.38514 -11.29884 -11.06885 -10.91909 -10.76907 -10.52869 -10.45092 -10.11526 -10.04228 -9.89005 -9.56116 -9.21003 -9.04225 -8.28071 -7.51179 -5.95590 -3.97520 3.33943 3.40190 3.43491 4.37082 4.53867 4.76764 4.84005 4.91708 5.12483 5.40078 5.43542 5.44962 5.52829 5.66484 5.73914 5.76775 5.79370 5.87513 5.92921 5.96714 6.05307 6.16711 6.23632 6.29459 6.37065 6.40983 6.42530 6.50687 6.67815 6.73375 6.79130 7.09925 7.63837 7.71110 7.89338 7.99647 8.16068 8.49693 9.10206 9.65805 11.15812 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.044790 B = 0.005797 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.984394 B = 4828.686922 C = 4967.278306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.048 3.952 3 N -0.528 5.528 4 C 0.056 3.944 5 C 0.029 3.971 6 C -0.520 4.520 7 H 0.052 0.948 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.087 3.913 15 H 0.036 0.964 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.128 4.128 19 C -0.145 4.145 20 C -0.140 4.140 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.016 0.984 29 H 0.023 0.977 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 1.393 -15.760 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.081 4.081 3 N -0.252 5.252 4 C -0.071 4.071 5 C -0.008 4.008 6 C -0.559 4.559 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.021 4.021 15 H 0.053 0.947 16 C -0.206 4.206 17 C -0.121 4.121 18 C -0.166 4.166 19 C -0.183 4.183 20 C -0.178 4.178 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.770 1.289 -15.662 15.957 hybrid contribution -1.197 0.376 1.053 1.638 sum -3.967 1.664 -14.609 15.229 Atomic orbital electron populations 1.22401 0.99202 1.01578 1.01721 1.22169 0.92214 0.91252 1.02416 1.62349 1.58902 1.01705 1.02209 1.22420 0.97511 0.98080 0.89049 1.19075 0.96061 0.95671 0.90005 1.21210 1.26260 1.16320 0.92092 0.92942 1.24981 0.95126 0.95148 0.99010 1.69971 1.30371 1.26835 1.26121 0.86630 0.77978 0.80090 0.83502 1.20765 1.21227 1.19926 1.21468 0.96458 0.93700 0.90517 0.94654 1.22014 1.02271 0.95474 1.00810 1.22596 0.96898 0.99587 0.92977 1.22966 0.96485 1.02582 0.94536 1.22853 0.97158 1.01113 0.97134 1.23021 0.96893 1.00855 0.97006 0.91941 0.93267 0.92902 0.91749 0.89808 0.96081 0.91902 0.96569 0.95889 0.93068 0.92565 0.91369 0.92804 0.89387 0.89433 0.91791 0.90789 0.91984 0.92187 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 9.21 37.16 0.34 -2.61 16 2 C 0.05 0.81 5.50 -3.82 -0.02 0.79 16 3 N -0.53 -9.61 4.58 -226.65 -1.04 -10.64 16 4 C 0.06 1.20 4.52 -3.83 -0.02 1.18 16 5 C 0.03 0.77 4.91 -27.89 -0.14 0.63 16 6 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 10 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.09 1.31 1.71 -67.71 -0.12 1.19 16 15 H 0.04 0.55 6.45 -51.93 -0.33 0.21 16 16 C -0.15 -2.11 7.59 37.16 0.28 -1.82 16 17 C -0.10 -1.31 3.39 -89.81 -0.30 -1.61 16 18 C -0.13 -1.58 7.37 -25.83 -0.19 -1.77 16 19 C -0.15 -1.49 8.09 -25.83 -0.21 -1.70 16 20 C -0.14 -1.50 7.45 -25.92 -0.19 -1.70 16 21 H 0.06 1.09 6.33 -51.93 -0.33 0.76 16 22 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.98 6.17 -51.93 -0.32 0.66 16 25 H 0.08 1.64 6.25 -51.93 -0.32 1.31 16 26 H 0.02 0.45 6.15 -51.92 -0.32 0.13 16 27 H 0.06 1.34 5.94 -51.93 -0.31 1.03 16 28 H 0.02 0.45 6.45 -51.93 -0.33 0.11 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.06 0.85 6.60 -51.93 -0.34 0.50 16 32 H 0.07 1.01 6.56 -51.93 -0.34 0.67 16 33 H 0.05 0.64 6.13 -51.93 -0.32 0.32 16 34 H 0.09 1.16 6.16 -51.93 -0.32 0.84 16 35 H 0.09 1.11 5.67 -51.93 -0.29 0.81 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.86 6.21 -51.93 -0.32 0.53 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -29.52 295.53 -8.47 -37.99 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.63 Total: -1.19 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.97 Total: -21.02 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.30 Total: -37.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.52 -8.47 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325715066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.913 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds