Wall clock time and date at job start Mon Mar 30 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.46787 * 2 1 4 4 C 1.46901 * 111.00047 * 65.22986 * 3 2 1 5 5 C 1.52995 * 109.47666 * 66.04189 * 4 3 2 6 6 C 1.50698 * 109.47078 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00408 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99681 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00249 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99641 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46824 * 90.00384 * 10 8 6 12 12 H 1.48500 * 109.46948 * 210.00151 * 10 8 6 13 13 H 1.48501 * 109.47259 * 330.00440 * 10 8 6 14 14 C 1.46895 * 110.99986 * 301.26796 * 3 2 1 15 15 H 1.08998 * 109.47184 * 62.26631 * 14 3 2 16 16 C 1.53009 * 109.46986 * 182.26777 * 14 3 2 17 17 C 1.52999 * 109.47309 * 302.26753 * 14 3 2 18 18 C 1.53783 * 113.61420 * 279.11580 * 17 14 3 19 19 C 1.53950 * 87.01951 * 220.04682 * 18 17 14 20 20 C 1.53782 * 87.11264 * 25.36580 * 19 18 17 21 21 H 1.09000 * 109.47285 * 301.83550 * 1 2 3 22 22 H 1.08992 * 109.47194 * 61.83760 * 1 2 3 23 23 H 1.09001 * 109.47251 * 181.83910 * 1 2 3 24 24 H 1.08999 * 109.47457 * 239.99642 * 2 1 3 25 25 H 1.09001 * 109.46918 * 120.00227 * 2 1 3 26 26 H 1.09009 * 109.46653 * 306.03935 * 4 3 2 27 27 H 1.09001 * 109.47221 * 186.04617 * 4 3 2 28 28 H 1.09004 * 109.46717 * 299.99847 * 5 4 3 29 29 H 1.09001 * 109.47261 * 59.99774 * 5 4 3 30 30 H 0.96998 * 120.00228 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46813 * 292.38344 * 16 14 3 32 32 H 1.08999 * 109.46976 * 52.38248 * 16 14 3 33 33 H 1.08997 * 109.46874 * 172.38156 * 16 14 3 34 34 H 1.08997 * 112.84945 * 50.31320 * 17 14 3 35 35 H 1.08995 * 113.61468 * 334.57018 * 18 17 14 36 36 H 1.09001 * 113.61139 * 105.47041 * 18 17 14 37 37 H 1.09000 * 113.54064 * 270.80974 * 19 18 17 38 38 H 1.09000 * 113.74411 * 139.94544 * 19 18 17 39 39 H 1.08999 * 113.61282 * 220.09165 * 20 19 18 40 40 H 1.08994 * 113.61827 * 89.18150 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6533 2.0729 1.2453 5 6 2.3894 1.4266 2.4205 6 6 2.0130 2.1319 3.6980 7 1 1.3186 2.9588 3.6740 8 6 2.5552 1.7217 4.8975 9 7 3.4012 0.7152 4.9267 10 14 2.0893 2.5964 6.4809 11 1 0.8995 1.9385 7.0782 12 1 3.2242 2.5287 7.4362 13 1 1.7737 4.0175 6.1870 14 6 1.5239 2.1186 -1.1722 15 1 0.4356 2.1678 -1.1365 16 6 2.0991 3.5364 -1.1672 17 6 1.9601 1.3957 -2.4482 18 6 3.4090 1.7001 -2.8640 19 6 2.8989 1.7406 -4.3159 20 6 1.5208 2.1061 -3.7394 21 1 -0.3634 0.5421 0.8731 22 1 -0.3633 0.4850 -0.9059 23 1 -0.3634 -1.0271 0.0330 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 0.5775 1.9925 1.4018 27 1 1.9327 3.1242 1.1754 28 1 2.1098 0.3753 2.4904 29 1 3.4651 1.5069 2.2640 30 1 3.7829 0.4268 5.7705 31 1 1.6809 4.0952 -0.3301 32 1 3.1834 3.4882 -1.0665 33 1 1.8429 4.0357 -2.1017 34 1 1.7244 0.3316 -2.4334 35 1 3.7742 2.6613 -2.5025 36 1 4.1011 0.8816 -2.6661 37 1 2.9212 0.7705 -4.8124 38 1 3.3453 2.5335 -4.9160 39 1 0.6909 1.6149 -4.2473 40 1 1.3689 3.1785 -3.6177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325715066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:08 Heat of formation + Delta-G solvation = -4.365073 kcal Electronic energy + Delta-G solvation = -16368.420537 eV Core-core repulsion = 13989.806619 eV Total energy + Delta-G solvation = -2378.613917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81724 -38.25062 -35.21279 -32.64023 -32.17774 -29.04634 -27.23909 -26.45442 -25.64060 -24.24804 -22.52522 -20.63283 -19.13423 -18.56552 -17.19990 -16.72606 -16.47847 -16.25687 -15.47876 -15.28229 -14.30540 -14.21160 -13.97714 -13.84913 -13.57357 -13.25207 -12.95002 -12.86770 -12.57263 -12.55456 -12.44716 -12.28581 -12.08654 -11.76016 -11.60295 -11.37255 -11.19034 -11.06225 -10.88569 -10.76886 -10.50466 -8.98023 -8.19096 -6.30263 1.39317 1.41002 1.52118 2.40448 3.10542 3.14123 3.82504 3.86792 3.95065 4.08699 4.20628 4.28793 4.38532 4.46288 4.53153 4.54111 4.60495 4.63267 4.84160 4.90889 4.97362 5.00863 5.05967 5.10512 5.16621 5.18711 5.19747 5.27108 5.33300 5.38442 5.50281 5.54051 5.71968 5.74896 5.84233 6.16981 6.41762 6.47912 6.87510 7.38702 8.93089 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.044790 B = 0.005797 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.984394 B = 4828.686922 C = 4967.278306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 N -0.539 5.539 4 C 0.075 3.925 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.965 3.035 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.087 3.913 15 H 0.037 0.963 16 C -0.146 4.146 17 C -0.106 4.106 18 C -0.136 4.136 19 C -0.134 4.134 20 C -0.130 4.130 21 H 0.038 0.962 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.063 0.937 28 H -0.008 1.008 29 H -0.012 1.012 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 2.294 -17.043 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.080 4.080 3 N -0.263 5.263 4 C -0.053 4.053 5 C 0.002 3.998 6 C -0.582 4.582 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.187 1.187 14 C -0.021 4.021 15 H 0.055 0.945 16 C -0.203 4.203 17 C -0.124 4.124 18 C -0.174 4.174 19 C -0.171 4.171 20 C -0.168 4.168 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.011 0.989 29 H 0.006 0.994 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.896 2.193 -16.967 17.546 hybrid contribution -0.808 0.051 1.413 1.628 sum -4.703 2.244 -15.553 16.403 Atomic orbital electron populations 1.22295 0.97631 1.02535 1.01448 1.22138 0.93512 0.90554 1.01788 1.62270 1.59720 1.02303 1.02026 1.22018 0.96471 0.97738 0.89029 1.18890 0.94326 0.94671 0.91943 1.21629 1.26523 1.16698 0.93300 0.92431 1.25946 0.94823 0.95819 1.02978 1.70112 1.31449 1.28367 1.27300 0.85457 0.77896 0.79208 0.78537 1.19762 1.20672 1.18728 1.21587 0.96486 0.94056 0.89935 0.94530 1.22002 1.01428 0.95063 1.01787 1.22628 0.97554 0.99525 0.92726 1.22999 0.95962 1.01878 0.96519 1.22808 0.96443 1.02078 0.95780 1.22990 0.97571 1.01008 0.95228 0.94287 0.91402 0.91237 0.89514 0.93239 0.96199 0.91853 0.98928 0.99366 0.92806 0.93853 0.92402 0.89974 0.89549 0.89968 0.92946 0.89928 0.90720 0.90908 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.45 9.21 71.98 0.66 -4.79 16 2 C 0.05 1.65 5.50 86.30 0.47 2.13 16 3 N -0.54 -19.82 4.58 -870.98 -3.99 -23.81 16 4 C 0.07 3.28 4.52 86.30 0.39 3.67 16 5 C 0.04 2.16 4.91 29.85 0.15 2.30 16 6 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.00 0.13 5.46 84.66 0.46 0.59 16 9 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 10 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 14 C 0.09 2.51 1.71 44.92 0.08 2.59 16 15 H 0.04 1.06 6.45 -2.39 -0.02 1.05 16 16 C -0.15 -3.95 7.59 71.99 0.55 -3.41 16 17 C -0.11 -2.49 3.39 -10.27 -0.03 -2.53 16 18 C -0.14 -3.15 7.37 31.18 0.23 -2.92 16 19 C -0.13 -2.34 8.09 31.18 0.25 -2.09 16 20 C -0.13 -2.36 7.45 31.12 0.23 -2.13 16 21 H 0.04 1.35 6.33 -2.39 -0.02 1.34 16 22 H 0.07 1.79 6.54 -2.39 -0.02 1.77 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.09 2.58 6.17 -2.39 -0.01 2.57 16 25 H 0.05 2.03 6.25 -2.39 -0.01 2.02 16 26 H 0.02 0.87 6.15 -2.38 -0.01 0.86 16 27 H 0.06 2.75 5.94 -2.39 -0.01 2.73 16 28 H -0.01 -0.45 6.45 -2.39 -0.02 -0.46 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.04 1.27 6.60 -2.39 -0.02 1.25 16 32 H 0.06 1.69 6.56 -2.39 -0.02 1.67 16 33 H 0.08 1.74 6.13 -2.39 -0.01 1.73 16 34 H 0.09 2.08 6.16 -2.39 -0.01 2.06 16 35 H 0.08 1.98 5.67 -2.39 -0.01 1.97 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.50 6.21 -2.39 -0.01 1.49 16 Total: -1.00 -64.59 295.53 3.00 -61.59 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.00 Total: 11.11 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.67 Total: -38.16 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -3.70 Total: -81.63 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.59 3.00 -61.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325715066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.229 kcal (2) G-P(sol) polarization free energy of solvation -64.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds