Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 240.00051 * 2 1 3 5 5 C 1.53772 * 113.61475 * 157.49598 * 4 2 1 6 6 C 1.53781 * 87.08354 * 220.02318 * 5 4 2 7 7 C 1.53781 * 113.61135 * 59.99693 * 4 2 1 8 8 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 9 9 C 1.46907 * 110.99981 * 58.94969 * 8 2 1 10 10 C 1.46908 * 110.99638 * 295.00301 * 8 2 1 11 11 C 1.53002 * 109.46604 * 189.99929 * 10 8 2 12 12 C 1.53002 * 109.46590 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47274 * 179.97438 * 12 11 10 14 14 H 1.08011 * 119.99614 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00600 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99767 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00137 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47273 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47098 * 120.00301 * 17 15 13 20 20 H 1.48498 * 109.46830 * 239.99840 * 17 15 13 21 21 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 23 23 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 24 24 H 1.09000 * 112.84759 * 288.80595 * 4 2 1 25 25 H 1.09000 * 113.61922 * 334.57064 * 5 4 2 26 26 H 1.08999 * 113.61689 * 105.47008 * 5 4 2 27 27 H 1.09005 * 113.61134 * 270.88438 * 6 5 4 28 28 H 1.08994 * 113.69575 * 139.99585 * 6 5 4 29 29 H 1.09000 * 113.61578 * 254.52872 * 7 4 2 30 30 H 1.09003 * 113.61302 * 25.43614 * 7 4 2 31 31 H 1.08999 * 109.46864 * 60.00301 * 9 8 2 32 32 H 1.09003 * 109.46529 * 180.02562 * 9 8 2 33 33 H 1.08996 * 109.47103 * 300.00462 * 9 8 2 34 34 H 1.09000 * 109.46788 * 309.99252 * 10 8 2 35 35 H 1.08996 * 109.47355 * 69.99505 * 10 8 2 36 36 H 1.08993 * 109.47225 * 299.99453 * 11 10 8 37 37 H 1.09000 * 109.47082 * 60.00216 * 11 10 8 38 38 H 1.08993 * 109.47310 * 299.99915 * 12 11 10 39 39 H 1.09008 * 109.47217 * 60.00059 * 12 11 10 40 40 H 0.96993 * 120.00222 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.4725 -0.3277 -1.6461 6 6 2.9921 -0.3572 -3.1066 7 6 1.5810 -0.0723 -2.5657 8 7 2.0197 -0.6926 1.1994 9 6 1.5283 -2.0762 1.2459 10 6 1.6487 0.0390 2.4181 11 6 2.3790 -0.5664 3.6185 12 6 1.9930 0.1959 4.8877 13 6 2.7117 -0.4007 6.0702 14 1 3.3776 -1.2396 5.9304 15 6 2.5194 0.1241 7.3306 16 7 1.7082 1.1453 7.5009 17 14 3.4109 -0.6151 8.7963 18 1 4.2589 -1.7458 8.3410 19 1 4.2661 0.4208 9.4295 20 1 2.4167 -1.1073 9.7835 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 1.8758 -1.7982 -1.2129 25 1 3.7639 0.6648 -1.3023 26 1 4.2151 -1.0914 -1.4152 27 1 3.0896 -1.3349 -3.5787 28 1 3.3969 0.4498 -3.7173 29 1 0.7965 -0.6300 -3.0772 30 1 1.3551 0.9901 -2.4733 31 1 1.8762 -2.6151 0.3646 32 1 1.9054 -2.5656 2.1439 33 1 0.4385 -2.0743 1.2639 34 1 1.9298 1.0869 2.3125 35 1 0.5723 -0.0346 2.5726 36 1 2.0979 -1.6142 3.7241 37 1 3.4554 -0.4927 3.4640 38 1 2.2743 1.2436 4.7819 39 1 0.9165 0.1226 5.0424 40 1 1.5731 1.5148 8.3875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325833098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = 2.204641 kcal Electronic energy + Delta-G solvation = -15805.679278 eV Core-core repulsion = 13427.350245 eV Total energy + Delta-G solvation = -2378.329033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61970 -37.03233 -33.74210 -31.74774 -29.80555 -27.15414 -26.20836 -25.27369 -24.99037 -22.46273 -20.30818 -19.59614 -19.16719 -16.28647 -15.93242 -15.23637 -15.00453 -14.80849 -14.37225 -13.74154 -13.47583 -12.90497 -12.53597 -12.47739 -12.21861 -12.04381 -11.75919 -11.56321 -11.31009 -11.13556 -11.01466 -10.74933 -10.51967 -10.44560 -10.35545 -10.23026 -10.07800 -9.53164 -9.25046 -8.98214 -8.30467 -7.89088 -5.95772 -3.97448 3.33840 3.41080 3.45888 4.14990 4.50367 4.58727 4.66549 4.76603 4.94321 5.21191 5.29652 5.40060 5.40839 5.51580 5.61566 5.66711 5.72083 5.74960 5.80254 5.85676 5.89167 6.00161 6.03557 6.06573 6.21606 6.26577 6.32929 6.42068 6.52735 6.78490 6.87239 7.19713 7.48271 7.51808 7.74049 7.89491 8.05411 8.49204 9.10145 9.66377 11.15809 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.055734 B = 0.004494 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.268121 B = 6228.397248 C = 6380.195713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.089 3.911 3 H 0.079 0.921 4 C -0.101 4.101 5 C -0.125 4.125 6 C -0.146 4.146 7 C -0.135 4.135 8 N -0.533 5.533 9 C 0.018 3.982 10 C 0.055 3.945 11 C -0.104 4.104 12 C 0.021 3.979 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -3.103 -19.124 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.020 4.020 3 H 0.097 0.903 4 C -0.119 4.119 5 C -0.162 4.162 6 C -0.184 4.184 7 C -0.173 4.173 8 N -0.256 5.256 9 C -0.131 4.131 10 C -0.072 4.072 11 C -0.142 4.142 12 C -0.017 4.017 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.461 -3.006 -19.006 19.248 hybrid contribution -0.547 -0.287 0.985 1.162 sum -1.008 -3.293 -18.022 18.348 Atomic orbital electron populations 1.22448 0.98022 1.02044 1.02016 1.21735 0.92297 0.97955 0.89994 0.90320 1.22597 0.96525 0.99909 0.92896 1.22816 0.96571 1.01997 0.94824 1.22848 0.97017 1.01451 0.97075 1.22921 0.96731 1.00961 0.96715 1.62279 1.59058 1.02247 1.02015 1.22474 0.97642 0.90583 1.02364 1.22293 0.97747 0.97738 0.89417 1.21650 0.99415 0.99247 0.93928 1.19081 0.96552 0.95406 0.90616 1.21304 1.26216 1.15685 0.92242 0.92651 1.25031 0.95426 0.95090 0.99015 1.69978 1.36995 1.24226 1.22488 0.86550 0.79608 0.79177 0.82766 1.19724 1.21036 1.21081 0.92490 0.92328 0.92436 0.89268 0.90148 0.91612 0.90610 0.91815 0.91939 0.90242 0.92046 0.90897 0.95720 0.91540 0.95268 0.93501 0.92706 0.96663 0.96902 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 8.30 37.16 0.31 -1.93 16 2 C 0.09 1.14 2.17 -67.71 -0.15 0.99 16 3 H 0.08 1.04 7.84 -51.93 -0.41 0.64 16 4 C -0.10 -1.09 3.05 -89.81 -0.27 -1.37 16 5 C -0.12 -1.32 7.63 -25.92 -0.20 -1.52 16 6 C -0.15 -1.30 8.08 -25.92 -0.21 -1.51 16 7 C -0.14 -1.24 6.68 -25.92 -0.17 -1.41 16 8 N -0.53 -8.17 4.75 -234.87 -1.12 -9.29 16 9 C 0.02 0.25 8.68 60.07 0.52 0.77 16 10 C 0.06 0.99 4.40 -3.82 -0.02 0.98 16 11 C -0.10 -2.24 5.08 -26.73 -0.14 -2.38 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 21 H 0.06 0.68 6.39 -51.93 -0.33 0.35 16 22 H 0.06 0.78 6.75 -51.93 -0.35 0.43 16 23 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 24 H 0.09 0.99 6.18 -51.93 -0.32 0.67 16 25 H 0.08 0.89 7.96 -51.93 -0.41 0.47 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.06 0.75 6.16 -51.93 -0.32 0.43 16 32 H 0.07 1.11 6.30 -51.93 -0.33 0.78 16 33 H 0.02 0.34 6.28 -51.93 -0.33 0.01 16 34 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 35 H 0.03 0.53 6.94 -51.93 -0.36 0.17 16 36 H 0.05 0.99 6.47 -51.93 -0.34 0.66 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -29.95 306.37 -8.87 -38.82 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -7.22 Total: -3.69 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.87 Total: -20.75 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.38 Total: -36.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.95 -8.87 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325833098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.026 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds