Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 240.00051 * 2 1 3 5 5 C 1.53772 * 113.61475 * 157.49598 * 4 2 1 6 6 C 1.53781 * 87.08354 * 220.02318 * 5 4 2 7 7 C 1.53781 * 113.61135 * 59.99693 * 4 2 1 8 8 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 9 9 C 1.46907 * 110.99981 * 58.94969 * 8 2 1 10 10 C 1.46908 * 110.99638 * 295.00301 * 8 2 1 11 11 C 1.53002 * 109.46604 * 189.99929 * 10 8 2 12 12 C 1.53002 * 109.46590 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47274 * 179.97438 * 12 11 10 14 14 H 1.08011 * 119.99614 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00600 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99767 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00137 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47273 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47098 * 120.00301 * 17 15 13 20 20 H 1.48498 * 109.46830 * 239.99840 * 17 15 13 21 21 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 23 23 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 24 24 H 1.09000 * 112.84759 * 288.80595 * 4 2 1 25 25 H 1.09000 * 113.61922 * 334.57064 * 5 4 2 26 26 H 1.08999 * 113.61689 * 105.47008 * 5 4 2 27 27 H 1.09005 * 113.61134 * 270.88438 * 6 5 4 28 28 H 1.08994 * 113.69575 * 139.99585 * 6 5 4 29 29 H 1.09000 * 113.61578 * 254.52872 * 7 4 2 30 30 H 1.09003 * 113.61302 * 25.43614 * 7 4 2 31 31 H 1.08999 * 109.46864 * 60.00301 * 9 8 2 32 32 H 1.09003 * 109.46529 * 180.02562 * 9 8 2 33 33 H 1.08996 * 109.47103 * 300.00462 * 9 8 2 34 34 H 1.09000 * 109.46788 * 309.99252 * 10 8 2 35 35 H 1.08996 * 109.47355 * 69.99505 * 10 8 2 36 36 H 1.08993 * 109.47225 * 299.99453 * 11 10 8 37 37 H 1.09000 * 109.47082 * 60.00216 * 11 10 8 38 38 H 1.08993 * 109.47310 * 299.99915 * 12 11 10 39 39 H 1.09008 * 109.47217 * 60.00059 * 12 11 10 40 40 H 0.96993 * 120.00222 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.4725 -0.3277 -1.6461 6 6 2.9921 -0.3572 -3.1066 7 6 1.5810 -0.0723 -2.5657 8 7 2.0197 -0.6926 1.1994 9 6 1.5283 -2.0762 1.2459 10 6 1.6487 0.0390 2.4181 11 6 2.3790 -0.5664 3.6185 12 6 1.9930 0.1959 4.8877 13 6 2.7117 -0.4007 6.0702 14 1 3.3776 -1.2396 5.9304 15 6 2.5194 0.1241 7.3306 16 7 1.7082 1.1453 7.5009 17 14 3.4109 -0.6151 8.7963 18 1 4.2589 -1.7458 8.3410 19 1 4.2661 0.4208 9.4295 20 1 2.4167 -1.1073 9.7835 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 1.8758 -1.7982 -1.2129 25 1 3.7639 0.6648 -1.3023 26 1 4.2151 -1.0914 -1.4152 27 1 3.0896 -1.3349 -3.5787 28 1 3.3969 0.4498 -3.7173 29 1 0.7965 -0.6300 -3.0772 30 1 1.3551 0.9901 -2.4733 31 1 1.8762 -2.6151 0.3646 32 1 1.9054 -2.5656 2.1439 33 1 0.4385 -2.0743 1.2639 34 1 1.9298 1.0869 2.3125 35 1 0.5723 -0.0346 2.5726 36 1 2.0979 -1.6142 3.7241 37 1 3.4554 -0.4927 3.4640 38 1 2.2743 1.2436 4.7819 39 1 0.9165 0.1226 5.0424 40 1 1.5731 1.5148 8.3875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325833098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -14.952911 kcal Electronic energy + Delta-G solvation = -15806.423286 eV Core-core repulsion = 13427.350245 eV Total energy + Delta-G solvation = -2379.073041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57970 -38.17965 -35.71746 -33.58390 -31.12421 -28.79064 -27.17840 -26.54303 -26.04374 -24.13165 -21.85932 -20.86903 -20.05819 -18.46450 -17.05475 -16.49872 -16.33144 -16.18791 -15.83778 -15.03682 -14.77110 -14.28490 -13.84948 -13.76606 -13.64099 -13.25651 -13.02299 -12.90592 -12.60189 -12.52888 -12.49646 -12.34945 -12.19522 -11.85535 -11.48200 -11.36850 -11.25395 -11.15576 -10.99948 -10.77551 -10.55586 -9.12194 -8.20418 -6.31514 1.39688 1.40167 1.53953 2.40888 2.99853 3.12586 3.73571 3.86215 3.93426 4.10216 4.13526 4.28690 4.33089 4.40484 4.51665 4.56211 4.66149 4.73231 4.80378 4.91108 4.93862 4.95447 4.99304 5.05426 5.09474 5.15072 5.17010 5.21919 5.27147 5.31347 5.48281 5.52698 5.70906 5.74614 5.85775 6.15419 6.27092 6.31886 6.85360 7.37774 8.91856 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.055734 B = 0.004494 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.268121 B = 6228.397248 C = 6380.195713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 H 0.071 0.929 4 C -0.101 4.101 5 C -0.131 4.131 6 C -0.138 4.138 7 C -0.129 4.129 8 N -0.540 5.540 9 C 0.018 3.982 10 C 0.068 3.932 11 C -0.089 4.089 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.059 0.941 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.050 0.950 37 H 0.049 0.951 38 H -0.009 1.009 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 -4.121 -20.216 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.119 4.119 5 C -0.169 4.169 6 C -0.175 4.175 7 C -0.166 4.166 8 N -0.263 5.263 9 C -0.130 4.130 10 C -0.060 4.060 11 C -0.127 4.127 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.202 1.202 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.088 -4.030 -20.121 20.521 hybrid contribution -0.674 0.054 1.296 1.462 sum -0.762 -3.976 -18.825 19.256 Atomic orbital electron populations 1.22390 0.97246 1.02252 1.02090 1.21812 0.92920 0.97656 0.89612 0.91044 1.22605 0.96865 0.99883 0.92576 1.22840 0.96277 1.01326 0.96451 1.22819 0.96416 1.02325 0.95945 1.22899 0.97312 1.01071 0.95359 1.62223 1.59612 1.02803 1.01647 1.22496 0.97915 0.89796 1.02749 1.21987 0.96841 0.97481 0.89644 1.21396 0.99320 0.98806 0.93156 1.18978 0.94812 0.94608 0.92812 1.21715 1.26693 1.16083 0.93475 0.92352 1.26000 0.96138 0.95398 1.02355 1.70105 1.38285 1.25524 1.23557 0.85377 0.78436 0.78586 0.78522 1.18627 1.20261 1.20236 0.92167 0.94081 0.90527 0.89049 0.90990 0.92238 0.89656 0.90997 0.90761 0.90051 0.89823 0.92308 0.95287 0.92069 0.95707 0.93167 0.93214 0.99107 0.99247 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.09 8.30 71.98 0.60 -3.50 16 2 C 0.09 2.15 2.17 44.92 0.10 2.25 16 3 H 0.07 1.85 7.84 -2.39 -0.02 1.83 16 4 C -0.10 -1.98 3.05 -10.27 -0.03 -2.02 16 5 C -0.13 -2.58 7.63 31.12 0.24 -2.34 16 6 C -0.14 -2.09 8.08 31.12 0.25 -1.84 16 7 C -0.13 -2.01 6.68 31.12 0.21 -1.80 16 8 N -0.54 -16.21 4.75 -897.00 -4.26 -20.47 16 9 C 0.02 0.49 8.68 127.69 1.11 1.60 16 10 C 0.07 2.49 4.40 86.30 0.38 2.87 16 11 C -0.09 -3.89 5.08 30.60 0.16 -3.73 16 12 C 0.03 1.40 4.97 29.85 0.15 1.55 16 13 C -0.54 -31.92 9.11 25.60 0.23 -31.68 16 14 H 0.06 3.32 7.74 -2.90 -0.02 3.30 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 16 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 17 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H 0.06 1.32 6.39 -2.39 -0.02 1.30 16 22 H 0.04 1.06 6.75 -2.39 -0.02 1.05 16 23 H 0.08 1.43 7.45 -2.39 -0.02 1.41 16 24 H 0.09 1.78 6.18 -2.39 -0.01 1.77 16 25 H 0.07 1.53 7.96 -2.39 -0.02 1.51 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 31 H 0.08 1.88 6.16 -2.39 -0.01 1.86 16 32 H 0.06 1.74 6.30 -2.39 -0.02 1.73 16 33 H 0.03 0.75 6.28 -2.39 -0.02 0.74 16 34 H 0.06 2.28 8.00 -2.39 -0.02 2.26 16 35 H 0.02 0.92 6.94 -2.39 -0.02 0.91 16 36 H 0.05 2.14 6.47 -2.39 -0.02 2.13 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.07 306.37 2.87 -61.20 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.97 Total: 8.09 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 3.85 Total: -38.26 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -3.98 Total: -78.25 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.07 2.87 -61.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325833098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.245 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds