Wall clock time and date at job start Mon Mar 30 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47173 * 2 1 4 4 C 1.53008 * 109.46826 * 119.99266 * 2 1 3 5 5 C 1.53783 * 113.61325 * 39.13627 * 4 2 1 6 6 C 1.53950 * 87.01990 * 220.04620 * 5 4 2 7 7 C 1.53779 * 113.61790 * 301.52599 * 4 2 1 8 8 N 1.46896 * 109.47511 * 239.99251 * 2 1 3 9 9 C 1.46896 * 111.00157 * 183.95505 * 8 2 1 10 10 C 1.46898 * 111.00067 * 60.00122 * 8 2 1 11 11 C 1.52992 * 109.47602 * 190.00050 * 10 8 2 12 12 C 1.52998 * 109.47371 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47258 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99705 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99990 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99888 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00017 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47128 * 90.00464 * 17 15 13 19 19 H 1.48502 * 109.47267 * 210.00571 * 17 15 13 20 20 H 1.48504 * 109.47271 * 330.00250 * 17 15 13 21 21 H 1.08995 * 109.47434 * 292.28596 * 1 2 3 22 22 H 1.08999 * 109.47265 * 52.28830 * 1 2 3 23 23 H 1.09003 * 109.47256 * 172.28555 * 1 2 3 24 24 H 1.09000 * 112.84551 * 170.32414 * 4 2 1 25 25 H 1.09005 * 113.61514 * 334.56407 * 5 4 2 26 26 H 1.08997 * 113.61878 * 105.47007 * 5 4 2 27 27 H 1.09005 * 113.54021 * 270.81128 * 6 5 4 28 28 H 1.08998 * 113.75173 * 139.93976 * 6 5 4 29 29 H 1.09000 * 113.61506 * 254.53202 * 7 4 2 30 30 H 1.09008 * 113.61070 * 25.43022 * 7 4 2 31 31 H 1.08997 * 109.47549 * 296.05006 * 9 8 2 32 32 H 1.09004 * 109.47338 * 56.04928 * 9 8 2 33 33 H 1.09001 * 109.47064 * 176.04502 * 9 8 2 34 34 H 1.09002 * 109.47055 * 70.00026 * 10 8 2 35 35 H 1.09000 * 109.46935 * 310.00361 * 10 8 2 36 36 H 1.09000 * 109.47229 * 300.00130 * 11 10 8 37 37 H 1.09002 * 109.46935 * 59.99902 * 11 10 8 38 38 H 1.08996 * 109.47536 * 299.99975 * 12 11 10 39 39 H 1.09002 * 109.47031 * 60.00132 * 12 11 10 40 40 H 0.97001 * 119.99756 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.2147 -1.9638 1.6233 6 6 1.3732 -1.5283 3.0914 7 6 1.5506 -0.0941 2.5655 8 7 2.0197 -0.6926 -1.1993 9 6 3.4850 -0.7946 -1.1868 10 6 1.5487 -0.0267 -2.4210 11 6 1.8628 -0.9046 -3.6339 12 6 1.3717 -0.2113 -4.9063 13 6 1.6816 -1.0759 -6.1012 14 1 2.1788 -2.0252 -5.9664 15 6 1.3305 -0.6550 -7.3663 16 7 1.6006 -1.4097 -8.4089 17 14 0.4701 0.9866 -7.5993 18 1 1.4842 2.0535 -7.7955 19 1 -0.4131 0.9178 -8.7911 20 1 -0.3449 1.2934 -6.3964 21 1 -0.3634 0.3897 0.9508 22 1 -0.3634 0.6286 -0.8130 23 1 -0.3634 -1.0184 -0.1380 24 1 3.1145 -0.9018 1.2248 25 1 0.1855 -1.9283 1.2660 26 1 1.7126 -2.9050 1.3900 27 1 2.2654 -1.9309 3.5711 28 1 0.4725 -1.6656 3.6897 29 1 2.3192 0.4721 3.0917 30 1 0.6134 0.4537 2.4663 31 1 3.9192 0.2042 -1.2298 32 1 3.8069 -1.2916 -0.2716 33 1 3.8164 -1.3724 -2.0497 34 1 2.0520 0.9343 -2.5281 35 1 0.4723 0.1321 -2.3564 36 1 2.9392 -1.0635 -3.6986 37 1 1.3596 -1.8656 -3.5269 38 1 0.2953 -0.0529 -4.8415 39 1 1.8746 0.7498 -5.0136 40 1 1.3532 -1.1137 -9.2989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325833131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:56 Heat of formation + Delta-G solvation = -7.298124 kcal Electronic energy + Delta-G solvation = -15896.032409 eV Core-core repulsion = 13517.291305 eV Total energy + Delta-G solvation = -2378.741104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.68693 -38.09268 -35.61074 -33.65525 -31.64330 -29.35840 -26.77040 -26.40967 -26.06066 -23.85613 -21.84167 -21.39404 -19.37626 -18.88028 -17.18244 -16.67648 -16.44467 -16.05402 -15.67123 -15.33937 -14.70651 -14.57133 -14.28680 -13.72292 -13.62087 -13.34776 -13.02749 -12.76018 -12.71939 -12.43617 -12.31210 -12.19247 -11.84859 -11.79854 -11.66223 -11.42779 -11.20008 -11.10882 -10.95818 -10.83129 -10.76315 -9.17920 -8.29582 -6.33904 1.35210 1.37558 1.49957 2.36344 2.94887 3.05564 3.78504 3.82025 3.92041 4.07281 4.15126 4.28018 4.31237 4.33881 4.50323 4.57711 4.67261 4.70033 4.79550 4.84696 4.90340 4.94080 4.98148 5.06095 5.08785 5.13189 5.15700 5.16423 5.25526 5.34652 5.49756 5.53693 5.60331 5.66485 5.72888 6.16751 6.28951 6.31424 6.74188 7.30662 8.87603 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.054732 B = 0.004852 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.457157 B = 5769.620415 C = 5961.137052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 H 0.033 0.967 4 C -0.109 4.109 5 C -0.134 4.134 6 C -0.137 4.137 7 C -0.132 4.132 8 N -0.543 5.543 9 C 0.021 3.979 10 C 0.062 3.938 11 C -0.087 4.087 12 C -0.009 4.009 13 C -0.533 4.533 14 H 0.028 0.972 15 C 0.002 3.998 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.246 1.246 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 5.112 23.678 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 H 0.051 0.949 4 C -0.127 4.127 5 C -0.171 4.171 6 C -0.175 4.175 7 C -0.170 4.170 8 N -0.268 5.268 9 C -0.127 4.127 10 C -0.066 4.066 11 C -0.125 4.125 12 C -0.047 4.047 13 C -0.571 4.571 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.169 1.169 21 H 0.098 0.902 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.491 4.622 23.515 24.011 hybrid contribution 0.323 0.997 -0.998 1.447 sum -1.168 5.619 22.517 23.237 Atomic orbital electron populations 1.22012 0.94031 1.02320 1.02114 1.21591 0.96044 0.94873 0.89422 0.94860 1.22684 0.99843 0.97281 0.92892 1.22995 1.00767 0.97124 0.96246 1.22828 1.02283 0.96287 0.96076 1.23003 1.01838 0.96823 0.95324 1.62031 1.10612 1.52415 1.01721 1.22466 0.87396 1.00010 1.02852 1.22136 1.00628 0.94718 0.89131 1.21277 0.99811 0.98465 0.92953 1.19490 0.96402 0.95598 0.93230 1.21506 1.38303 1.05206 0.92127 0.95362 1.26066 0.96279 1.01646 0.95449 1.70079 1.49625 1.40255 0.99437 0.85603 0.79189 0.79026 0.78490 1.19111 1.20810 1.16907 0.90209 0.93317 0.91941 0.89326 0.89716 0.92666 0.90033 0.90840 0.91112 0.89349 0.95841 0.89769 0.92407 0.95437 0.90346 0.93686 0.93483 0.96120 0.96548 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 7.65 71.98 0.55 -2.56 16 2 C 0.09 2.02 2.21 44.92 0.10 2.12 16 3 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.11 -2.05 3.36 -10.26 -0.03 -2.09 16 5 C -0.13 -2.49 7.37 31.18 0.23 -2.26 16 6 C -0.14 -1.98 8.09 31.18 0.25 -1.73 16 7 C -0.13 -1.96 7.45 31.12 0.23 -1.72 16 8 N -0.54 -15.48 4.63 -897.09 -4.15 -19.63 16 9 C 0.02 0.55 9.01 127.69 1.15 1.70 16 10 C 0.06 2.03 4.77 86.30 0.41 2.44 16 11 C -0.09 -3.60 5.08 30.59 0.16 -3.45 16 12 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 13 C -0.53 -32.01 9.66 25.60 0.25 -31.76 16 14 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 15 C 0.00 0.12 5.47 84.65 0.46 0.58 16 16 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 17 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 21 H 0.08 1.32 6.12 -2.39 -0.01 1.30 16 22 H 0.05 1.09 6.62 -2.39 -0.02 1.07 16 23 H 0.06 1.42 6.57 -2.39 -0.02 1.40 16 24 H 0.09 1.70 6.01 -2.39 -0.01 1.69 16 25 H 0.08 1.63 5.67 -2.38 -0.01 1.62 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.22 6.21 -2.38 -0.01 1.21 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.88 5.85 -2.39 -0.01 1.86 16 33 H 0.06 1.71 6.47 -2.39 -0.02 1.70 16 34 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 35 H 0.08 2.49 5.99 -2.39 -0.01 2.48 16 36 H 0.04 1.90 6.55 -2.39 -0.02 1.88 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 39 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 40 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -66.12 299.23 2.84 -63.28 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.93 Total: 9.37 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 3.88 Total: -39.05 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.85 Total: -80.64 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -66.12 2.84 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325833131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.986 kcal (2) G-P(sol) polarization free energy of solvation -66.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds