Wall clock time and date at job start Mon Mar 30 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47079 * 2 1 4 4 C 1.50697 * 109.47133 * 240.00665 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.34711 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34483 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46896 * 109.47558 * 120.00317 * 2 1 3 13 13 C 1.46904 * 110.99717 * 274.99999 * 12 2 1 14 14 C 1.53004 * 109.46682 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.46703 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47404 * 300.00155 * 15 14 13 17 17 C 1.52999 * 109.46946 * 60.00744 * 15 14 13 18 18 C 1.53004 * 109.46703 * 179.97438 * 15 14 13 19 19 C 1.53002 * 117.49626 * 248.74872 * 18 15 14 20 20 C 1.53009 * 117.49441 * 180.09200 * 18 15 14 21 21 H 1.09000 * 109.47264 * 174.97871 * 1 2 3 22 22 H 1.09003 * 109.47042 * 294.97327 * 1 2 3 23 23 H 1.09003 * 109.47658 * 54.97610 * 1 2 3 24 24 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 25 25 H 1.00897 * 111.00375 * 151.04884 * 12 2 1 26 26 H 1.08995 * 109.47200 * 299.99992 * 13 12 2 27 27 H 1.09000 * 109.46886 * 60.00327 * 13 12 2 28 28 H 1.08995 * 109.47460 * 300.00034 * 14 13 12 29 29 H 1.09000 * 109.47029 * 60.00615 * 14 13 12 30 30 H 1.08997 * 109.47114 * 60.00252 * 16 15 14 31 31 H 1.09003 * 109.47005 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.47064 * 300.00056 * 16 15 14 33 33 H 1.09001 * 109.47875 * 59.99506 * 17 15 14 34 34 H 1.09002 * 109.47494 * 180.02562 * 17 15 14 35 35 H 1.09006 * 109.46697 * 299.99508 * 17 15 14 36 36 H 1.08994 * 115.55201 * 34.42007 * 18 15 14 37 37 H 1.08998 * 117.50141 * 0.02562 * 19 18 15 38 38 H 1.09003 * 117.49694 * 145.02667 * 19 18 15 39 39 H 1.08997 * 117.49175 * 214.98119 * 20 18 15 40 40 H 1.08990 * 117.49778 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.5801 -1.6360 -1.1339 6 6 1.7925 -0.1784 -2.4798 7 7 1.2151 0.9978 -2.5939 8 14 2.2877 -1.1283 -4.0101 9 1 1.2110 -2.0864 -4.3680 10 1 2.5006 -0.1807 -5.1336 11 1 3.5450 -1.8727 -3.7455 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2226 2.3468 14 6 2.5952 -0.5333 3.5743 15 6 2.6612 0.4200 4.7693 16 6 3.6113 1.5754 4.4482 17 6 1.2643 0.9734 5.0580 18 6 3.1733 -0.3361 5.9970 19 6 2.1856 -0.5784 7.1401 20 6 3.3092 0.4483 7.3037 21 1 -0.3634 -1.0237 -0.0899 22 1 -0.3633 0.4339 0.9316 23 1 -0.3634 0.5898 -0.8416 24 1 1.0461 1.3718 -3.4728 25 1 2.9173 -1.1205 1.0286 26 1 2.7588 1.0462 2.1181 27 1 1.0871 0.6162 2.5525 28 1 1.9186 -1.3567 3.8029 29 1 3.5906 -0.9272 3.3689 30 1 3.2461 2.1138 3.5738 31 1 3.6587 2.2542 5.2998 32 1 4.6065 1.1810 4.2426 33 1 0.5874 0.1503 5.2867 34 1 1.3114 1.6529 5.9090 35 1 0.8991 1.5119 4.1834 36 1 3.9117 -1.1124 5.7969 37 1 1.1710 -0.1996 7.0174 38 1 2.2746 -1.5140 7.6923 39 1 4.1369 0.1877 7.9632 40 1 3.0343 1.5029 7.2885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328302322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:33 Heat of formation + Delta-G solvation = -15.033387 kcal Electronic energy + Delta-G solvation = -15929.484139 eV Core-core repulsion = 13550.407609 eV Total energy + Delta-G solvation = -2379.076530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20190 -37.76954 -35.47451 -33.93915 -31.03907 -28.30431 -28.15460 -27.23854 -25.25277 -23.01217 -22.29146 -21.64278 -19.12487 -18.43595 -17.16488 -16.84189 -16.20727 -15.78628 -15.34216 -14.94378 -14.81831 -14.14104 -13.93084 -13.65797 -13.44402 -13.04740 -12.83654 -12.69752 -12.58469 -12.37731 -12.34479 -12.29097 -12.08037 -11.81979 -11.67802 -11.63833 -11.27646 -10.96865 -10.82549 -10.63276 -10.57025 -9.01228 -8.16535 -6.27978 1.41738 1.43486 1.52755 2.41442 2.99294 3.14949 3.52576 3.81494 3.95578 4.12338 4.21086 4.25604 4.33603 4.50568 4.59486 4.71008 4.74974 4.81501 4.85588 4.87530 5.01707 5.03828 5.08004 5.11296 5.16042 5.18533 5.22067 5.25194 5.35690 5.43968 5.46106 5.54585 5.57226 5.67591 5.82127 6.15738 6.47344 6.80558 7.01829 7.42425 8.92252 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.056398 B = 0.004876 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.349678 B = 5741.608613 C = 5830.188243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.213 3.787 3 H -0.030 1.030 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.690 5.690 13 C 0.062 3.938 14 C -0.091 4.091 15 C -0.027 4.027 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.184 4.184 20 C -0.172 4.172 21 H 0.031 0.969 22 H 0.026 0.974 23 H 0.040 0.960 24 H 0.263 0.737 25 H 0.331 0.669 26 H 0.012 0.988 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 -0.739 17.301 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 H -0.012 1.012 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.320 5.320 13 C -0.067 4.067 14 C -0.128 4.128 15 C -0.027 4.027 16 C -0.197 4.197 17 C -0.201 4.201 18 C -0.168 4.168 19 C -0.221 4.221 20 C -0.209 4.209 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.737 -0.848 17.337 17.572 hybrid contribution 0.833 0.334 -1.404 1.667 sum 3.570 -0.514 15.933 16.336 Atomic orbital electron populations 1.21460 0.97881 0.99051 0.98019 1.18911 0.92525 0.90954 0.87157 1.01243 1.21578 1.35921 1.08430 0.91841 0.92234 1.25766 0.95138 0.95541 1.02163 1.70080 1.43948 1.17515 1.24473 0.85503 0.78867 0.78354 0.78506 1.19969 1.20925 1.19103 1.60644 1.32111 1.33683 1.05583 1.22069 0.99447 0.93906 0.91286 1.21480 1.00781 0.97845 0.92742 1.19954 0.95414 0.94494 0.92870 1.21884 0.98935 0.97694 1.01172 1.22032 0.95879 1.00927 1.01282 1.22269 1.02917 1.02402 0.89187 1.23200 0.96020 1.01069 1.01789 1.22988 1.01158 0.97595 0.99177 0.94953 0.95504 0.94119 0.92839 0.85213 0.96983 0.92373 0.91748 0.92300 0.93798 0.91551 0.92791 0.92088 0.91596 0.93613 0.88142 0.88154 0.88478 0.88157 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.40 9.21 71.98 0.66 -4.73 16 2 C 0.21 11.26 2.47 44.17 0.11 11.37 16 3 H -0.03 -1.77 7.78 -2.39 -0.02 -1.79 16 4 C -0.54 -30.39 8.50 25.60 0.22 -30.17 16 5 H 0.06 3.28 7.68 -2.91 -0.02 3.26 16 6 C 0.01 0.74 5.29 84.65 0.45 1.19 16 7 N -0.92 -54.40 11.98 21.45 0.26 -54.14 16 8 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.69 -30.36 6.30 -495.46 -3.12 -33.49 16 13 C 0.06 2.28 4.78 86.30 0.41 2.69 16 14 C -0.09 -2.60 4.51 30.60 0.14 -2.46 16 15 C -0.03 -0.62 0.65 -52.18 -0.03 -0.66 16 16 C -0.14 -3.27 7.96 71.98 0.57 -2.70 16 17 C -0.14 -3.28 6.72 71.98 0.48 -2.80 16 18 C -0.15 -2.97 5.15 -10.79 -0.06 -3.03 16 19 C -0.18 -3.19 9.57 30.62 0.29 -2.90 16 20 C -0.17 -2.83 9.39 30.62 0.29 -2.54 16 21 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.03 1.21 7.35 -2.39 -0.02 1.20 16 23 H 0.04 2.23 6.84 -2.39 -0.02 2.22 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.33 14.26 8.26 -89.70 -0.74 13.52 16 26 H 0.01 0.47 6.34 -2.39 -0.02 0.45 16 27 H 0.06 2.19 5.65 -2.39 -0.01 2.18 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.17 6.43 -2.39 -0.02 1.16 16 31 H 0.07 1.32 7.29 -2.39 -0.02 1.31 16 32 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.35 6.97 -2.39 -0.02 1.34 16 34 H 0.07 1.27 7.07 -2.39 -0.02 1.26 16 35 H 0.04 1.18 6.43 -2.38 -0.02 1.17 16 36 H 0.10 2.02 8.11 -2.39 -0.02 2.00 16 37 H 0.10 1.74 5.85 -2.39 -0.01 1.73 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.52 7.07 -2.39 -0.02 1.50 16 Total: -1.00 -60.23 305.62 2.95 -57.27 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.26 Total: 20.99 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 3.54 Total: -36.73 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.87 Total: -87.63 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -60.23 2.95 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328302322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.239 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds