Wall clock time and date at job start Mon Mar 30 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 C 1.53002 * 109.46930 * 120.00236 * 2 1 3 5 5 H 1.09003 * 110.05838 * 187.46070 * 4 2 1 6 6 C 1.54269 * 110.03300 * 308.87095 * 4 2 1 7 7 C 1.54887 * 104.19434 * 142.89435 * 6 4 2 8 8 C 1.54883 * 102.75141 * 322.06006 * 7 6 4 9 9 C 1.53871 * 110.03685 * 66.04015 * 4 2 1 10 10 H 1.09000 * 110.07232 * 121.40480 * 9 4 2 11 11 N 1.46906 * 110.03071 * 0.02562 * 9 4 2 12 12 C 1.46898 * 110.99844 * 171.38929 * 11 9 4 13 13 H 1.08997 * 109.47120 * 34.99910 * 12 11 9 14 14 C 1.53003 * 109.46883 * 275.00045 * 12 11 9 15 15 C 1.50699 * 109.46851 * 155.00173 * 12 11 9 16 16 H 1.08001 * 120.00305 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99816 * 179.72600 * 15 12 11 18 18 N 1.31516 * 120.00210 * 0.26781 * 17 15 12 19 19 Si 1.86803 * 119.99946 * 180.27653 * 17 15 12 20 20 H 1.48498 * 109.47418 * 59.99764 * 19 17 15 21 21 H 1.48502 * 109.47091 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46761 * 299.99358 * 19 17 15 23 23 H 1.09002 * 109.47114 * 308.84158 * 1 2 3 24 24 H 1.08997 * 109.46916 * 68.83973 * 1 2 3 25 25 H 1.08997 * 109.47390 * 188.84427 * 1 2 3 26 26 H 1.09004 * 109.47041 * 239.99628 * 2 1 3 27 27 H 1.08996 * 109.47009 * 174.93981 * 3 2 1 28 28 H 1.08999 * 109.47201 * 294.93944 * 3 2 1 29 29 H 1.08999 * 109.47250 * 54.94115 * 3 2 1 30 30 H 1.09007 * 110.48460 * 24.22063 * 6 4 2 31 31 H 1.08997 * 110.60268 * 261.63388 * 6 4 2 32 32 H 1.09008 * 110.75400 * 203.74284 * 7 6 4 33 33 H 1.09004 * 110.75648 * 80.37808 * 7 6 4 34 34 H 1.08999 * 110.48866 * 279.26058 * 8 7 6 35 35 H 1.09003 * 110.59680 * 156.66968 * 8 7 6 36 36 H 1.00904 * 110.99926 * 47.43325 * 11 9 4 37 37 H 1.08990 * 109.47304 * 60.00340 * 14 12 11 38 38 H 1.09004 * 109.46848 * 180.02562 * 14 12 11 39 39 H 1.09010 * 109.46816 * 299.99863 * 14 12 11 40 40 H 0.96998 * 120.00570 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 3.1217 -0.6132 1.3279 6 6 1.3585 -0.1448 2.5075 7 6 1.1435 -1.3769 3.4212 8 6 0.7643 -2.4889 2.4120 9 6 1.6622 -2.2117 1.1886 10 1 2.5602 -2.8275 1.2372 11 7 0.9259 -2.4942 -0.0509 12 6 0.7325 -3.9392 -0.2306 13 1 0.5848 -4.4097 0.7415 14 6 1.9679 -4.5391 -0.9051 15 6 -0.4785 -4.1802 -1.0946 16 1 -1.0478 -3.3437 -1.4720 17 6 -0.8567 -5.4687 -1.4074 18 7 -0.1638 -6.4875 -0.9474 19 14 -2.3533 -5.7673 -2.4847 20 1 -2.1483 -5.1226 -3.8066 21 1 -2.5454 -7.2280 -2.6713 22 1 -3.5556 -5.1887 -1.8329 23 1 -0.3633 0.6445 0.8004 24 1 -0.3633 0.3710 -0.9584 25 1 -0.3634 -1.0154 0.1580 26 1 1.8933 -0.5139 -0.8900 27 1 3.1262 1.4437 0.0906 28 1 1.7526 1.9294 -0.9318 29 1 1.6046 1.9818 0.8412 30 1 0.4022 0.3099 2.2490 31 1 2.0066 0.5833 2.9951 32 1 0.3296 -1.1992 4.1241 33 1 2.0626 -1.6314 3.9491 34 1 -0.2880 -2.4128 2.1381 35 1 0.9792 -3.4734 2.8276 36 1 1.3927 -2.0898 -0.8489 37 1 2.8437 -4.3648 -0.2803 38 1 1.8241 -5.6113 -1.0389 39 1 2.1155 -4.0685 -1.8773 40 1 -0.4296 -7.3939 -1.1678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379569223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:13 Heat of formation + Delta-G solvation = -13.085855 kcal Electronic energy + Delta-G solvation = -16843.600505 eV Core-core repulsion = 14464.608426 eV Total energy + Delta-G solvation = -2378.992079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.24912 -35.02219 -33.66110 -32.06002 -28.72090 -27.32095 -26.67564 -25.40232 -24.97015 -21.74419 -20.64897 -19.28937 -17.82261 -16.29701 -15.68914 -14.96134 -14.65830 -14.24653 -14.01463 -13.37876 -12.94721 -12.56168 -12.22325 -12.08594 -11.68768 -11.35352 -11.13535 -10.98260 -10.87681 -10.74885 -10.63976 -10.59245 -10.47597 -10.13054 -10.11962 -10.11717 -9.85139 -9.78192 -9.55245 -8.88734 -8.29933 -7.01207 -5.93465 -3.96286 3.36752 3.40716 3.44032 4.47673 5.00581 5.00737 5.05708 5.37960 5.43759 5.50628 5.56887 5.60042 5.89574 5.97120 6.03062 6.03977 6.06055 6.09733 6.26800 6.29990 6.34609 6.41665 6.52063 6.62320 6.72299 6.76019 6.77283 6.83012 6.90140 6.93102 7.15701 7.42847 7.52453 7.80390 7.95493 8.36366 8.62358 8.71127 9.11281 9.68885 11.13512 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032433 B = 0.007810 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.121464 B = 3584.410627 C = 3840.095382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.084 4.084 5 H 0.058 0.942 6 C -0.119 4.119 7 C -0.125 4.125 8 C -0.109 4.109 9 C 0.086 3.914 10 H 0.027 0.973 11 N -0.669 5.669 12 C 0.206 3.794 13 H 0.036 0.964 14 C -0.169 4.169 15 C -0.492 4.492 16 H 0.061 0.939 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.278 1.278 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.327 0.673 37 H 0.003 0.997 38 H 0.087 0.913 39 H 0.025 0.975 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.941 11.152 4.883 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.103 4.103 5 H 0.076 0.924 6 C -0.156 4.156 7 C -0.163 4.163 8 C -0.147 4.147 9 C -0.024 4.024 10 H 0.045 0.955 11 N -0.301 5.301 12 C 0.099 3.901 13 H 0.053 0.947 14 C -0.228 4.228 15 C -0.530 4.530 16 H 0.079 0.921 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.203 1.203 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.134 0.866 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.022 0.978 38 H 0.106 0.894 39 H 0.044 0.956 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.324 11.033 5.150 12.621 hybrid contribution 0.295 -0.593 -0.896 1.114 sum 3.619 10.440 4.255 11.840 Atomic orbital electron populations 1.22339 0.94217 1.06133 0.99165 1.20945 0.97363 0.93998 0.97356 1.21908 1.00073 0.97401 1.01036 1.21892 0.98314 0.95004 0.95042 0.92369 1.22504 1.00943 0.97007 0.95190 1.22463 1.00321 0.96065 0.97454 1.22378 1.01190 0.97099 0.94079 1.22028 0.94440 0.93457 0.92516 0.95464 1.61255 1.50060 1.16139 1.02645 1.19212 0.92828 0.81790 0.96308 0.94653 1.22429 0.96935 1.05653 0.97813 1.21132 1.10322 0.91750 1.29846 0.92067 1.24943 0.96944 0.96234 0.96432 1.69875 1.39538 0.98469 1.45967 0.86614 0.83395 0.76705 0.80943 1.20482 1.21570 1.20350 0.94488 0.94553 0.86570 0.91498 0.93640 0.93326 0.93140 0.90568 0.92985 0.92203 0.92456 0.90228 0.92648 0.85343 0.97800 0.89398 0.95571 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 8.10 37.16 0.30 -2.21 16 2 C -0.08 -1.12 2.21 -90.62 -0.20 -1.32 16 3 C -0.15 -1.79 8.98 37.16 0.33 -1.46 16 4 C -0.08 -1.23 2.71 -89.50 -0.24 -1.47 16 5 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.12 -1.59 5.48 -25.07 -0.14 -1.72 16 7 C -0.13 -1.73 6.91 -24.74 -0.17 -1.90 16 8 C -0.11 -1.88 5.50 -25.08 -0.14 -2.02 16 9 C 0.09 1.53 2.85 -66.59 -0.19 1.34 16 10 H 0.03 0.52 7.29 -51.93 -0.38 0.14 16 11 N -0.67 -13.55 2.81 -99.78 -0.28 -13.83 16 12 C 0.21 5.08 2.43 -68.86 -0.17 4.91 16 13 H 0.04 0.96 7.03 -51.93 -0.37 0.60 16 14 C -0.17 -4.10 8.93 37.16 0.33 -3.76 16 15 C -0.49 -13.41 8.84 -34.44 -0.30 -13.72 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.26 16 17 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 18 N -0.90 -25.80 11.31 55.43 0.63 -25.18 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.04 0.53 6.20 -51.93 -0.32 0.20 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.12 2.15 5.46 -51.93 -0.28 1.86 16 26 H 0.07 1.03 6.27 -51.93 -0.33 0.71 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 30 H 0.08 1.04 5.38 -51.93 -0.28 0.76 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.50 8.05 -51.93 -0.42 1.09 16 35 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.33 6.46 5.92 -39.29 -0.23 6.23 16 37 H 0.00 0.07 7.37 -51.93 -0.38 -0.32 16 38 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 39 H 0.03 0.60 8.13 -51.92 -0.42 0.18 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -27.07 295.27 -7.95 -35.02 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.05 Total: 4.88 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -0.68 Total: -21.91 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.35 Total: -39.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.07 -7.95 -35.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379569223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.937 kcal (2) G-P(sol) polarization free energy of solvation -27.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds