Wall clock time and date at job start Mon Mar 30 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 C 1.53002 * 109.46930 * 120.00236 * 2 1 3 5 5 H 1.09003 * 110.05838 * 187.46070 * 4 2 1 6 6 C 1.54269 * 110.03300 * 308.87095 * 4 2 1 7 7 C 1.54887 * 104.19434 * 142.89435 * 6 4 2 8 8 C 1.54883 * 102.75141 * 322.06006 * 7 6 4 9 9 C 1.53871 * 110.03685 * 66.04015 * 4 2 1 10 10 H 1.09000 * 110.07232 * 121.40480 * 9 4 2 11 11 N 1.46906 * 110.03071 * 0.02562 * 9 4 2 12 12 C 1.46898 * 110.99844 * 171.38929 * 11 9 4 13 13 H 1.08997 * 109.47120 * 34.99910 * 12 11 9 14 14 C 1.53003 * 109.46883 * 275.00045 * 12 11 9 15 15 C 1.50699 * 109.46851 * 155.00173 * 12 11 9 16 16 H 1.08001 * 120.00305 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99816 * 179.72600 * 15 12 11 18 18 N 1.31516 * 120.00210 * 0.26781 * 17 15 12 19 19 Si 1.86803 * 119.99946 * 180.27653 * 17 15 12 20 20 H 1.48498 * 109.47418 * 59.99764 * 19 17 15 21 21 H 1.48502 * 109.47091 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46761 * 299.99358 * 19 17 15 23 23 H 1.09002 * 109.47114 * 308.84158 * 1 2 3 24 24 H 1.08997 * 109.46916 * 68.83973 * 1 2 3 25 25 H 1.08997 * 109.47390 * 188.84427 * 1 2 3 26 26 H 1.09004 * 109.47041 * 239.99628 * 2 1 3 27 27 H 1.08996 * 109.47009 * 174.93981 * 3 2 1 28 28 H 1.08999 * 109.47201 * 294.93944 * 3 2 1 29 29 H 1.08999 * 109.47250 * 54.94115 * 3 2 1 30 30 H 1.09007 * 110.48460 * 24.22063 * 6 4 2 31 31 H 1.08997 * 110.60268 * 261.63388 * 6 4 2 32 32 H 1.09008 * 110.75400 * 203.74284 * 7 6 4 33 33 H 1.09004 * 110.75648 * 80.37808 * 7 6 4 34 34 H 1.08999 * 110.48866 * 279.26058 * 8 7 6 35 35 H 1.09003 * 110.59680 * 156.66968 * 8 7 6 36 36 H 1.00904 * 110.99926 * 47.43325 * 11 9 4 37 37 H 1.08990 * 109.47304 * 60.00340 * 14 12 11 38 38 H 1.09004 * 109.46848 * 180.02562 * 14 12 11 39 39 H 1.09010 * 109.46816 * 299.99863 * 14 12 11 40 40 H 0.96998 * 120.00570 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 3.1217 -0.6132 1.3279 6 6 1.3585 -0.1448 2.5075 7 6 1.1435 -1.3769 3.4212 8 6 0.7643 -2.4889 2.4120 9 6 1.6622 -2.2117 1.1886 10 1 2.5602 -2.8275 1.2372 11 7 0.9259 -2.4942 -0.0509 12 6 0.7325 -3.9392 -0.2306 13 1 0.5848 -4.4097 0.7415 14 6 1.9679 -4.5391 -0.9051 15 6 -0.4785 -4.1802 -1.0946 16 1 -1.0478 -3.3437 -1.4720 17 6 -0.8567 -5.4687 -1.4074 18 7 -0.1638 -6.4875 -0.9474 19 14 -2.3533 -5.7673 -2.4847 20 1 -2.1483 -5.1226 -3.8066 21 1 -2.5454 -7.2280 -2.6713 22 1 -3.5556 -5.1887 -1.8329 23 1 -0.3633 0.6445 0.8004 24 1 -0.3633 0.3710 -0.9584 25 1 -0.3634 -1.0154 0.1580 26 1 1.8933 -0.5139 -0.8900 27 1 3.1262 1.4437 0.0906 28 1 1.7526 1.9294 -0.9318 29 1 1.6046 1.9818 0.8412 30 1 0.4022 0.3099 2.2490 31 1 2.0066 0.5833 2.9951 32 1 0.3296 -1.1992 4.1241 33 1 2.0626 -1.6314 3.9491 34 1 -0.2880 -2.4128 2.1381 35 1 0.9792 -3.4734 2.8276 36 1 1.3927 -2.0898 -0.8489 37 1 2.8437 -4.3648 -0.2803 38 1 1.8241 -5.6113 -1.0389 39 1 2.1155 -4.0685 -1.8773 40 1 -0.4296 -7.3939 -1.1678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379569223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:13 Heat of formation + Delta-G solvation = -26.672969 kcal Electronic energy + Delta-G solvation = -16844.189687 eV Core-core repulsion = 14464.608426 eV Total energy + Delta-G solvation = -2379.581260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57531 -36.80743 -34.88169 -33.99175 -30.46014 -28.54373 -27.83302 -27.21656 -26.75436 -22.95853 -22.39644 -20.74749 -19.16543 -18.24357 -17.09615 -16.67821 -16.22536 -15.64236 -15.41240 -14.87962 -14.42356 -14.13565 -13.68009 -13.58582 -13.15333 -12.89911 -12.84674 -12.60812 -12.50468 -12.28764 -12.17056 -12.00369 -11.95393 -11.75312 -11.69524 -11.43945 -11.23517 -11.07872 -10.92903 -10.83584 -10.43363 -8.69138 -8.06189 -6.16389 1.43265 1.44627 1.52172 2.45483 3.22138 3.66860 3.78090 3.82130 4.10539 4.35265 4.41374 4.47646 4.64971 4.75776 4.78517 4.80673 4.83645 4.89936 4.92126 5.01083 5.10578 5.14651 5.16872 5.22473 5.26900 5.28645 5.35063 5.42459 5.52990 5.60802 5.63315 5.68979 5.74938 5.87113 6.10626 6.34800 6.74207 6.93412 7.02052 7.53547 8.99180 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032433 B = 0.007810 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.121464 B = 3584.410627 C = 3840.095382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.077 4.077 5 H 0.071 0.929 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.111 4.111 9 C 0.082 3.918 10 H 0.012 0.988 11 N -0.661 5.661 12 C 0.213 3.787 13 H 0.004 0.996 14 C -0.157 4.157 15 C -0.507 4.507 16 H 0.055 0.945 17 C 0.007 3.993 18 N -0.925 5.925 19 Si 0.957 3.043 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.051 0.949 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.330 0.670 37 H 0.019 0.981 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 13.188 5.171 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.096 4.096 3 C -0.197 4.197 4 C -0.096 4.096 5 H 0.090 0.910 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.029 4.029 10 H 0.030 0.970 11 N -0.293 5.293 12 C 0.104 3.896 13 H 0.022 0.978 14 C -0.217 4.217 15 C -0.546 4.546 16 H 0.074 0.926 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.783 3.217 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.150 0.850 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.596 13.089 5.441 14.624 hybrid contribution 0.223 -1.234 -0.959 1.579 sum 3.820 11.854 4.482 13.237 Atomic orbital electron populations 1.22218 0.95198 1.04325 0.99628 1.20903 0.96432 0.95669 0.96556 1.21829 1.00734 0.95354 1.01805 1.21868 0.99251 0.92364 0.96130 0.91046 1.22479 1.01264 0.97029 0.94189 1.22433 1.01373 0.94677 0.96888 1.22337 0.99682 0.97798 0.95122 1.22162 0.93539 0.95842 0.91325 0.96966 1.61210 1.51039 1.13163 1.03885 1.18947 0.92318 0.84202 0.94116 0.97834 1.22257 0.97479 1.03674 0.98242 1.21434 1.11244 0.91746 1.30135 0.92642 1.25700 0.99611 0.96075 0.97691 1.70011 1.40902 0.98688 1.46985 0.85634 0.80097 0.76595 0.79388 1.19769 1.21247 1.19930 0.93055 0.94680 0.89759 0.92918 0.92564 0.92872 0.92071 0.90707 0.90305 0.90824 0.91158 0.92543 0.94436 0.84975 0.96233 0.92163 0.95213 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 8.10 71.98 0.58 -4.09 16 2 C -0.08 -2.06 2.21 -10.79 -0.02 -2.08 16 3 C -0.14 -2.95 8.98 71.98 0.65 -2.30 16 4 C -0.08 -2.11 2.71 -10.07 -0.03 -2.14 16 5 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 6 C -0.11 -2.64 5.48 31.67 0.17 -2.47 16 7 C -0.12 -2.96 6.91 31.88 0.22 -2.74 16 8 C -0.11 -3.86 5.50 31.67 0.17 -3.69 16 9 C 0.08 2.89 2.85 45.64 0.13 3.02 16 10 H 0.01 0.47 7.29 -2.39 -0.02 0.46 16 11 N -0.66 -27.23 2.81 -469.60 -1.32 -28.55 16 12 C 0.21 10.81 2.43 44.17 0.11 10.91 16 13 H 0.00 0.21 7.03 -2.39 -0.02 0.19 16 14 C -0.16 -7.77 8.93 71.98 0.64 -7.13 16 15 C -0.51 -28.24 8.84 25.60 0.23 -28.01 16 16 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 17 C 0.01 0.38 5.30 84.65 0.45 0.83 16 18 N -0.93 -54.30 11.31 21.45 0.24 -54.06 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H 0.05 1.36 6.20 -2.39 -0.01 1.35 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 3.12 5.46 -2.39 -0.01 3.10 16 26 H 0.05 1.57 6.27 -2.38 -0.01 1.55 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 30 H 0.07 1.80 5.38 -2.38 -0.01 1.79 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 35 H 0.04 1.39 8.07 -2.39 -0.02 1.37 16 36 H 0.33 13.14 5.92 -89.69 -0.53 12.60 16 37 H 0.02 0.86 7.37 -2.39 -0.02 0.84 16 38 H 0.06 3.33 6.06 -2.38 -0.01 3.31 16 39 H 0.03 1.39 8.13 -2.38 -0.02 1.37 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -58.67 295.27 4.71 -53.96 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.46 Total: 21.88 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 3.30 Total: -39.88 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.08 Total: -82.61 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -58.67 4.71 -53.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379569223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.285 kcal (2) G-P(sol) polarization free energy of solvation -58.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds