Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 C 1.53000 * 109.47155 * 120.00144 * 2 1 3 5 5 H 1.09006 * 110.53807 * 298.83952 * 4 2 1 6 6 C 1.54887 * 110.48663 * 61.44944 * 4 2 1 7 7 C 1.54890 * 102.91108 * 156.52843 * 6 4 2 8 8 C 1.54463 * 104.10368 * 322.30112 * 7 6 4 9 9 C 1.53877 * 106.68421 * 23.34437 * 8 7 6 10 10 H 1.08995 * 110.02951 * 240.87549 * 9 8 7 11 11 N 1.46894 * 110.07272 * 119.46279 * 9 8 7 12 12 C 1.46901 * 111.00174 * 87.80990 * 11 9 8 13 13 H 1.09006 * 109.47076 * 34.99443 * 12 11 9 14 14 C 1.53003 * 109.47116 * 275.00184 * 12 11 9 15 15 C 1.50695 * 109.47614 * 154.99709 * 12 11 9 16 16 H 1.08006 * 120.00100 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00286 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99871 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00126 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46867 * 89.99781 * 19 17 15 21 21 H 1.48495 * 109.46999 * 209.99854 * 19 17 15 22 22 H 1.48505 * 109.46768 * 329.99887 * 19 17 15 23 23 H 1.08998 * 109.46735 * 300.00065 * 1 2 3 24 24 H 1.09005 * 109.47015 * 59.99948 * 1 2 3 25 25 H 1.08998 * 109.47443 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46735 * 239.99935 * 2 1 3 27 27 H 1.09005 * 109.47238 * 299.99915 * 3 2 1 28 28 H 1.08990 * 109.47236 * 60.00025 * 3 2 1 29 29 H 1.09004 * 109.47155 * 180.02562 * 3 2 1 30 30 H 1.09002 * 110.75856 * 274.93753 * 6 4 2 31 31 H 1.09006 * 110.75640 * 38.12739 * 6 4 2 32 32 H 1.09003 * 110.48855 * 80.83451 * 7 6 4 33 33 H 1.09003 * 110.48748 * 203.47148 * 7 6 4 34 34 H 1.08999 * 109.85715 * 264.10233 * 8 7 6 35 35 H 1.08997 * 110.12155 * 142.72920 * 8 7 6 36 36 H 1.00902 * 111.00600 * 323.85883 * 11 9 8 37 37 H 1.08999 * 109.46723 * 179.97438 * 14 12 11 38 38 H 1.08993 * 109.46827 * 299.99487 * 14 12 11 39 39 H 1.08996 * 109.47002 * 59.99416 * 14 12 11 40 40 H 0.96994 * 119.99331 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7033 -0.2093 2.1507 6 6 1.5670 -2.1961 1.2547 7 6 2.6101 -2.8908 2.1650 8 6 3.9424 -2.1944 1.8101 9 6 3.5795 -0.8177 1.2262 10 1 3.9433 -0.7391 0.2018 11 7 4.1629 0.2491 2.0504 12 6 5.5273 0.5686 1.6094 13 1 5.5920 0.4673 0.5260 14 6 6.5157 -0.3934 2.2715 15 6 5.8638 1.9839 2.0025 16 1 5.1371 2.5859 2.5279 17 6 7.0996 2.5105 1.6915 18 7 7.9848 1.7774 1.0522 19 14 7.5170 4.2647 2.1795 20 1 8.1313 4.2695 3.5315 21 1 8.4741 4.8368 1.1989 22 1 6.2773 5.0821 2.1961 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 0.5668 -2.2794 1.6799 31 1 1.5933 -2.6140 0.2483 32 1 2.3660 -2.7316 3.2153 33 1 2.6617 -3.9564 1.9417 34 1 4.4823 -2.7838 1.0690 35 1 4.5514 -2.0714 2.7057 36 1 4.1481 -0.0001 3.0281 37 1 7.5280 -0.1566 1.9439 38 1 6.4510 -0.2921 3.3548 39 1 6.2723 -1.4171 1.9871 40 1 8.8542 2.1478 0.8338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379569224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -46.266265 kcal Electronic energy + Delta-G solvation = -16628.342116 eV Core-core repulsion = 14247.911227 eV Total energy + Delta-G solvation = -2380.430889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22558 -36.94744 -35.16906 -33.89005 -30.41733 -28.77643 -27.78614 -27.29184 -26.61889 -22.33897 -22.06888 -21.06296 -20.42324 -18.29219 -16.83776 -16.56622 -16.20191 -15.28385 -15.06291 -14.73103 -14.32185 -14.05100 -13.93349 -13.62874 -13.38160 -13.09859 -12.94866 -12.87687 -12.74040 -12.27454 -12.20258 -12.08964 -11.88999 -11.77385 -11.63678 -11.43156 -11.33239 -11.25335 -11.05714 -10.76885 -10.45803 -8.79096 -8.07332 -6.17952 1.41597 1.42321 1.53287 2.44574 3.20602 3.63552 3.75373 3.83755 4.15289 4.24496 4.37699 4.50041 4.61873 4.69695 4.77383 4.81445 4.86790 4.87040 4.92931 4.97472 4.99899 5.10960 5.13645 5.16042 5.21398 5.30731 5.31799 5.35916 5.48906 5.51679 5.53468 5.71812 5.73019 5.73868 5.90124 6.33278 6.75045 6.93470 7.02352 7.52352 8.97801 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030941 B = 0.007820 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.739462 B = 3579.804595 C = 4239.124122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 C -0.135 4.135 4 C -0.068 4.068 5 H 0.070 0.930 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.089 3.911 10 H 0.044 0.956 11 N -0.673 5.673 12 C 0.223 3.777 13 H -0.006 1.006 14 C -0.158 4.158 15 C -0.509 4.509 16 H 0.053 0.947 17 C 0.007 3.993 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.271 1.271 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.328 0.672 37 H 0.055 0.945 38 H 0.028 0.972 39 H 0.031 0.969 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 -7.536 0.128 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.087 4.087 5 H 0.089 0.911 6 C -0.149 4.149 7 C -0.153 4.153 8 C -0.192 4.192 9 C -0.022 4.022 10 H 0.062 0.938 11 N -0.302 5.302 12 C 0.115 3.885 13 H 0.012 0.988 14 C -0.217 4.217 15 C -0.548 4.548 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.188 -6.987 -0.315 14.927 hybrid contribution 1.532 0.277 0.384 1.603 sum -11.656 -6.709 0.069 13.449 Atomic orbital electron populations 1.21789 0.93766 1.02245 1.01664 1.21057 0.96485 0.95360 0.97109 1.21688 1.00643 0.96573 1.00324 1.21984 0.92785 0.95877 0.98053 0.91134 1.22530 0.98771 0.93713 0.99895 1.22320 0.93669 0.99358 0.99905 1.23023 0.98554 0.97477 1.00171 1.22294 0.95349 0.88667 0.95863 0.93762 1.60739 1.22024 1.41451 1.05946 1.18871 0.83656 0.93194 0.92824 0.98775 1.22340 1.03630 0.97139 0.98597 1.21486 0.98679 0.98667 1.35954 0.92875 1.25705 0.96389 1.01475 0.95507 1.70024 1.06740 1.37723 1.42020 0.85577 0.77842 0.80431 0.77878 1.20162 1.21103 1.19569 0.92854 0.92607 0.91408 0.92353 0.93363 0.93553 0.94505 0.89935 0.91265 0.91387 0.90728 0.92984 0.92654 0.85430 0.92592 0.95306 0.95035 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.98 71.98 0.65 -2.26 16 2 C -0.08 -2.24 2.31 -10.79 -0.02 -2.27 16 3 C -0.13 -4.47 8.90 71.98 0.64 -3.83 16 4 C -0.07 -1.92 2.13 -9.72 -0.02 -1.94 16 5 H 0.07 2.12 8.05 -2.38 -0.02 2.10 16 6 C -0.11 -2.45 5.27 31.88 0.17 -2.28 16 7 C -0.11 -2.66 6.85 31.74 0.22 -2.44 16 8 C -0.15 -4.68 5.15 31.39 0.16 -4.51 16 9 C 0.09 3.13 1.96 45.64 0.09 3.22 16 10 H 0.04 1.78 7.03 -2.39 -0.02 1.76 16 11 N -0.67 -28.24 5.40 -469.61 -2.53 -30.78 16 12 C 0.22 11.42 2.57 44.17 0.11 11.54 16 13 H -0.01 -0.33 7.43 -2.38 -0.02 -0.35 16 14 C -0.16 -7.71 8.35 71.98 0.60 -7.11 16 15 C -0.51 -28.73 8.84 25.60 0.23 -28.50 16 16 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 17 C 0.01 0.39 5.30 84.65 0.45 0.84 16 18 N -0.92 -54.49 11.32 21.45 0.24 -54.24 16 19 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.21 7.20 -2.39 -0.02 1.19 16 26 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 27 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.50 6.93 -2.39 -0.02 1.49 16 30 H 0.08 1.50 7.99 -2.39 -0.02 1.48 16 31 H 0.07 1.45 8.06 -2.38 -0.02 1.44 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.81 6.22 -2.39 -0.01 1.80 16 36 H 0.33 13.22 7.90 -89.69 -0.71 12.52 16 37 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 38 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 39 H 0.03 1.36 6.02 -2.39 -0.01 1.35 16 40 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -59.80 302.46 3.28 -56.52 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.28 Total: 21.09 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.27 Total: -39.55 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.29 Total: -85.02 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -59.80 3.28 -56.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379569224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.255 kcal (2) G-P(sol) polarization free energy of solvation -59.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds