Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09001 * 109.46941 * 35.00074 * 13 12 2 15 15 C 1.52998 * 109.47147 * 275.00225 * 13 12 2 16 16 C 1.52995 * 109.47247 * 154.99976 * 13 12 2 17 17 C 1.52998 * 109.47503 * 295.00230 * 16 13 12 18 18 C 1.54276 * 110.02807 * 292.16564 * 17 16 13 19 19 C 1.54889 * 104.19583 * 217.10205 * 18 17 16 20 20 C 1.54886 * 102.74707 * 37.94050 * 19 18 17 21 21 C 1.53870 * 110.03885 * 175.00246 * 17 16 13 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00396 * 38.94794 * 12 2 1 27 27 H 1.09000 * 109.47197 * 59.99804 * 15 13 12 28 28 H 1.08999 * 109.47517 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47077 * 299.99766 * 15 13 12 30 30 H 1.09006 * 109.47294 * 55.00097 * 16 13 12 31 31 H 1.09007 * 109.47601 * 175.00063 * 16 13 12 32 32 H 1.08993 * 110.01599 * 53.60274 * 17 16 13 33 33 H 1.08997 * 110.48759 * 335.78301 * 18 17 16 34 34 H 1.09008 * 110.48109 * 98.42756 * 18 17 16 35 35 H 1.09005 * 110.75448 * 279.63046 * 19 18 17 36 36 H 1.08993 * 110.91246 * 156.33451 * 19 18 17 37 37 H 1.08995 * 110.48947 * 203.37400 * 20 19 18 38 38 H 1.09004 * 110.48228 * 80.73769 * 20 19 18 39 39 H 1.08997 * 110.03485 * 238.56920 * 21 17 16 40 40 H 1.09005 * 110.02591 * 359.94791 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2577 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9770 -0.5797 3.6453 17 6 0.5984 -1.2380 3.7277 18 6 -0.4918 -0.1608 3.9047 19 6 -1.5165 -0.8119 4.8665 20 6 -0.6120 -1.5927 5.8520 21 6 0.5219 -2.1483 4.9658 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7087 1.1612 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 3.4862 1.5524 1.3972 28 1 3.4580 1.6595 3.1739 29 1 4.2360 0.2705 2.3785 30 1 2.7487 -1.3495 3.6606 31 1 2.1125 0.0874 4.4967 32 1 0.4076 -1.8184 2.8251 33 1 -0.0693 0.7399 4.3501 34 1 -0.9598 0.0692 2.9475 35 1 -2.1757 -1.4914 4.3262 36 1 -2.0944 -0.0517 5.3920 37 1 -1.1676 -2.4075 6.3161 38 1 -0.2090 -0.9232 6.6120 39 1 0.2932 -3.1705 4.6642 40 1 1.4674 -2.1218 5.5076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379572462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = -33.640516 kcal Electronic energy + Delta-G solvation = -16374.600844 eV Core-core repulsion = 13994.717449 eV Total energy + Delta-G solvation = -2379.883396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.73460 -36.26543 -33.37911 -31.04377 -29.32624 -28.57533 -26.87887 -25.07228 -24.60730 -20.96395 -20.42308 -19.77048 -18.93353 -16.36928 -15.59579 -15.05266 -14.98949 -14.56163 -13.89186 -13.25495 -13.11153 -12.71439 -12.32663 -12.04908 -11.66737 -11.52377 -11.24812 -11.22446 -11.04104 -10.89456 -10.80793 -10.73168 -10.59104 -10.42961 -10.26958 -10.17584 -10.06303 -9.88360 -9.56074 -8.88339 -8.29626 -7.10258 -5.92475 -3.95279 3.37749 3.41392 3.45045 4.48830 4.68683 4.75772 4.83821 5.28466 5.33231 5.38901 5.49317 5.54319 5.68372 5.73384 5.76622 5.84632 5.95145 5.97632 6.02277 6.12876 6.15849 6.29862 6.32128 6.38403 6.44579 6.55867 6.68606 6.74030 6.79524 6.91531 6.93655 7.20702 7.49489 7.81432 7.97024 8.37772 8.67111 8.74200 9.12246 9.69927 11.14490 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.006341 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.067139 B = 4414.360123 C = 4637.806306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.060 0.940 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.082 3.918 14 H 0.035 0.965 15 C -0.135 4.135 16 C -0.110 4.110 17 C -0.095 4.095 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.120 4.120 22 H 0.087 0.913 23 H 0.025 0.975 24 H 0.005 0.995 25 H 0.259 0.741 26 H 0.324 0.676 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -2.385 14.285 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.312 5.312 13 C -0.029 4.029 14 H 0.053 0.947 15 C -0.193 4.193 16 C -0.148 4.148 17 C -0.114 4.114 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.157 4.157 22 H 0.105 0.895 23 H 0.044 0.956 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.142 0.858 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.686 -2.187 13.971 14.241 hybrid contribution -0.711 -0.292 -0.750 1.074 sum -2.397 -2.479 13.221 13.663 Atomic orbital electron populations 1.22435 1.00930 0.98949 1.00340 1.19163 0.89367 0.94396 0.86664 0.94947 1.21153 1.29986 1.12305 0.89744 0.92138 1.24944 0.95422 0.95234 0.98968 1.69875 1.37444 1.23276 1.23292 0.86596 0.79167 0.79601 0.82192 1.20444 1.21525 1.20352 1.60884 1.58037 1.08930 1.03372 1.21429 0.96524 0.94446 0.90480 0.94694 1.21756 0.97730 0.99308 1.00527 1.21875 0.96091 0.99333 0.97505 1.21824 0.95257 0.96218 0.98086 1.22466 0.95887 0.97920 0.99454 1.22498 0.97535 0.99081 0.97217 1.22343 0.96799 0.99237 0.97724 1.22207 0.98450 0.98952 0.96110 0.89481 0.95601 0.97554 0.93127 0.85763 0.92494 0.94134 0.92719 0.91608 0.92338 0.90729 0.91789 0.91499 0.91735 0.92080 0.92243 0.92014 0.92133 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.92 37.16 0.33 -3.73 16 2 C 0.21 5.38 2.38 -68.87 -0.16 5.22 16 3 H 0.03 0.91 7.11 -51.93 -0.37 0.54 16 4 C -0.49 -13.86 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.09 11.32 55.43 0.63 -25.46 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.68 -14.55 6.04 -100.95 -0.61 -15.16 16 13 C 0.08 1.47 2.38 -67.71 -0.16 1.31 16 14 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 15 C -0.14 -2.36 9.40 37.16 0.35 -2.01 16 16 C -0.11 -1.60 3.93 -26.73 -0.11 -1.71 16 17 C -0.10 -1.31 2.83 -89.50 -0.25 -1.56 16 18 C -0.12 -1.61 5.46 -25.07 -0.14 -1.75 16 19 C -0.13 -1.43 6.91 -24.74 -0.17 -1.60 16 20 C -0.12 -1.29 6.83 -25.08 -0.17 -1.47 16 21 C -0.12 -1.39 6.46 -25.62 -0.17 -1.55 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 23 H 0.02 0.60 8.13 -51.93 -0.42 0.18 16 24 H 0.01 0.12 6.63 -51.93 -0.34 -0.22 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.32 6.64 6.16 -39.29 -0.24 6.40 16 27 H 0.06 1.11 7.43 -51.93 -0.39 0.73 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 32 H 0.07 1.15 6.30 -51.93 -0.33 0.83 16 33 H 0.06 0.84 7.76 -51.93 -0.40 0.44 16 34 H 0.07 1.01 7.34 -51.92 -0.38 0.63 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -28.23 304.05 -8.73 -36.96 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.26 Total: 3.85 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.05 Total: -21.58 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.02 Total: -40.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.23 -8.73 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379572462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.315 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds