Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09001 * 109.46941 * 35.00074 * 13 12 2 15 15 C 1.52998 * 109.47147 * 275.00225 * 13 12 2 16 16 C 1.52995 * 109.47247 * 154.99976 * 13 12 2 17 17 C 1.52998 * 109.47503 * 295.00230 * 16 13 12 18 18 C 1.54276 * 110.02807 * 292.16564 * 17 16 13 19 19 C 1.54889 * 104.19583 * 217.10205 * 18 17 16 20 20 C 1.54886 * 102.74707 * 37.94050 * 19 18 17 21 21 C 1.53870 * 110.03885 * 175.00246 * 17 16 13 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00396 * 38.94794 * 12 2 1 27 27 H 1.09000 * 109.47197 * 59.99804 * 15 13 12 28 28 H 1.08999 * 109.47517 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47077 * 299.99766 * 15 13 12 30 30 H 1.09006 * 109.47294 * 55.00097 * 16 13 12 31 31 H 1.09007 * 109.47601 * 175.00063 * 16 13 12 32 32 H 1.08993 * 110.01599 * 53.60274 * 17 16 13 33 33 H 1.08997 * 110.48759 * 335.78301 * 18 17 16 34 34 H 1.09008 * 110.48109 * 98.42756 * 18 17 16 35 35 H 1.09005 * 110.75448 * 279.63046 * 19 18 17 36 36 H 1.08993 * 110.91246 * 156.33451 * 19 18 17 37 37 H 1.08995 * 110.48947 * 203.37400 * 20 19 18 38 38 H 1.09004 * 110.48228 * 80.73769 * 20 19 18 39 39 H 1.08997 * 110.03485 * 238.56920 * 21 17 16 40 40 H 1.09005 * 110.02591 * 359.94791 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2577 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9770 -0.5797 3.6453 17 6 0.5984 -1.2380 3.7277 18 6 -0.4918 -0.1608 3.9047 19 6 -1.5165 -0.8119 4.8665 20 6 -0.6120 -1.5927 5.8520 21 6 0.5219 -2.1483 4.9658 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7087 1.1612 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 3.4862 1.5524 1.3972 28 1 3.4580 1.6595 3.1739 29 1 4.2360 0.2705 2.3785 30 1 2.7487 -1.3495 3.6606 31 1 2.1125 0.0874 4.4967 32 1 0.4076 -1.8184 2.8251 33 1 -0.0693 0.7399 4.3501 34 1 -0.9598 0.0692 2.9475 35 1 -2.1757 -1.4914 4.3262 36 1 -2.0944 -0.0517 5.3920 37 1 -1.1676 -2.4075 6.3161 38 1 -0.2090 -0.9232 6.6120 39 1 0.2932 -3.1705 4.6642 40 1 1.4674 -2.1218 5.5076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379572462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = -49.291890 kcal Electronic energy + Delta-G solvation = -16375.279539 eV Core-core repulsion = 13994.717449 eV Total energy + Delta-G solvation = -2380.562090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92127 -37.78795 -35.23072 -32.85384 -30.57715 -29.53257 -28.68353 -27.21694 -25.79425 -22.53186 -21.80486 -21.00566 -20.18193 -18.37001 -16.94268 -16.71615 -16.32534 -16.00707 -15.41132 -14.63517 -14.47531 -14.17355 -13.85397 -13.66631 -13.31266 -13.01624 -12.84181 -12.76763 -12.73758 -12.36676 -12.21720 -12.04135 -11.91674 -11.81701 -11.80802 -11.48591 -11.44759 -11.25089 -10.97115 -10.91561 -10.46458 -8.88115 -8.08185 -6.19360 1.42575 1.44561 1.52293 2.44629 3.19684 3.64557 3.75431 3.79676 3.83698 4.19599 4.35514 4.47307 4.58907 4.66516 4.70207 4.73318 4.76955 4.83848 4.87801 4.89948 4.97869 5.03751 5.06259 5.11657 5.14064 5.20127 5.29655 5.36177 5.43755 5.47394 5.50119 5.54881 5.59747 5.70901 5.87453 6.31609 6.72574 6.91184 7.00405 7.50951 8.97120 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.006341 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.067139 B = 4414.360123 C = 4637.806306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.080 3.920 14 H 0.021 0.979 15 C -0.132 4.132 16 C -0.099 4.099 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.116 4.116 22 H 0.059 0.941 23 H 0.027 0.973 24 H 0.023 0.977 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 -3.255 15.814 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.111 3.889 3 H 0.016 0.984 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.030 4.030 14 H 0.039 0.961 15 C -0.190 4.190 16 C -0.136 4.136 17 C -0.115 4.115 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.154 4.154 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.506 -3.064 15.518 15.889 hybrid contribution -0.762 0.019 -1.198 1.420 sum -2.268 -3.046 14.319 14.814 Atomic orbital electron populations 1.22213 1.00281 0.98793 0.99776 1.18884 0.89688 0.92564 0.87809 0.98351 1.21460 1.30294 1.12379 0.91242 0.92905 1.25726 0.95511 0.95901 1.01899 1.70009 1.38131 1.24349 1.23942 0.85584 0.78627 0.78682 0.78524 1.19652 1.20966 1.19949 1.60778 1.57691 1.09489 1.03531 1.21535 0.96312 0.94175 0.91022 0.96083 1.21734 0.97438 0.99513 1.00277 1.21788 0.96709 0.99248 0.95898 1.21797 0.94787 0.96463 0.98413 1.22448 0.96416 0.98220 0.98817 1.22495 0.97257 0.99354 0.97025 1.22333 0.96144 0.99683 0.97380 1.22181 0.99577 0.98460 0.95176 0.92257 0.95389 0.95774 0.93079 0.85212 0.95620 0.90987 0.92458 0.91358 0.90156 0.92970 0.91424 0.94047 0.92100 0.90863 0.90806 0.90954 0.91940 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.53 8.92 71.98 0.64 -6.88 16 2 C 0.22 11.45 2.38 44.17 0.11 11.55 16 3 H 0.00 -0.08 7.11 -2.39 -0.02 -0.10 16 4 C -0.52 -29.48 8.84 25.60 0.23 -29.25 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.42 5.30 84.65 0.45 0.87 16 7 N -0.92 -54.62 11.32 21.44 0.24 -54.37 16 8 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.68 -29.52 6.04 -473.31 -2.86 -32.38 16 13 C 0.08 2.84 2.38 44.91 0.11 2.94 16 14 H 0.02 0.82 6.34 -2.39 -0.02 0.80 16 15 C -0.13 -4.52 9.40 71.98 0.68 -3.85 16 16 C -0.10 -2.69 3.93 30.59 0.12 -2.57 16 17 C -0.10 -2.50 2.83 -10.07 -0.03 -2.53 16 18 C -0.12 -3.13 5.46 31.67 0.17 -2.95 16 19 C -0.12 -2.56 6.91 31.88 0.22 -2.34 16 20 C -0.12 -2.10 6.83 31.67 0.22 -1.88 16 21 C -0.12 -2.39 6.46 31.31 0.20 -2.19 16 22 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 23 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 24 H 0.02 1.06 6.63 -2.39 -0.02 1.05 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.33 13.57 6.16 -89.70 -0.55 13.02 16 27 H 0.02 1.01 7.43 -2.39 -0.02 0.99 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.08 1.87 8.00 -2.38 -0.02 1.86 16 32 H 0.05 1.59 6.30 -2.39 -0.02 1.58 16 33 H 0.07 1.67 7.76 -2.39 -0.02 1.65 16 34 H 0.04 1.25 7.34 -2.38 -0.02 1.24 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.37 7.67 -2.38 -0.02 1.35 16 Total: -1.00 -60.87 304.05 2.95 -57.91 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.43 Total: 20.91 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.11 Total: -39.07 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.62 Total: -86.75 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -60.87 2.95 -57.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379572462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.623 kcal (2) G-P(sol) polarization free energy of solvation -60.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds