Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47414 * 2 1 4 4 C 1.50705 * 109.47011 * 239.99968 * 2 1 3 5 5 H 1.07990 * 120.00263 * 240.00501 * 4 2 1 6 6 C 1.37883 * 119.99734 * 59.99876 * 4 2 1 7 7 N 1.31515 * 119.99800 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99745 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46943 * 60.00497 * 8 6 4 10 10 H 1.48502 * 109.46888 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47222 * 300.00175 * 8 6 4 12 12 N 1.46895 * 109.47036 * 120.00568 * 2 1 3 13 13 C 1.46907 * 110.99905 * 272.67228 * 12 2 1 14 14 H 1.09003 * 109.46579 * 339.73416 * 13 12 2 15 15 C 1.52991 * 109.47366 * 99.73452 * 13 12 2 16 16 C 1.52996 * 109.47281 * 219.74308 * 13 12 2 17 17 C 1.52999 * 109.47541 * 64.99389 * 16 13 12 18 18 C 1.54268 * 110.03187 * 292.16819 * 17 16 13 19 19 C 1.54886 * 104.19686 * 217.10191 * 18 17 16 20 20 C 1.54893 * 102.74767 * 37.94267 * 19 18 17 21 21 C 1.53878 * 110.03339 * 175.00164 * 17 16 13 22 22 H 1.08999 * 109.47611 * 178.32288 * 1 2 3 23 23 H 1.08998 * 109.46889 * 298.32672 * 1 2 3 24 24 H 1.09001 * 109.46996 * 58.31999 * 1 2 3 25 25 H 0.97000 * 119.99340 * 180.02562 * 7 6 4 26 26 H 1.00890 * 111.00246 * 36.62244 * 12 2 1 27 27 H 1.08994 * 109.47644 * 294.34577 * 15 13 12 28 28 H 1.09007 * 109.46995 * 54.34545 * 15 13 12 29 29 H 1.08997 * 109.47588 * 174.34076 * 15 13 12 30 30 H 1.09007 * 109.47031 * 304.99578 * 16 13 12 31 31 H 1.08995 * 109.47141 * 185.00171 * 16 13 12 32 32 H 1.08995 * 110.01571 * 53.61195 * 17 16 13 33 33 H 1.09000 * 110.48880 * 335.78551 * 18 17 16 34 34 H 1.09005 * 110.48408 * 98.42660 * 18 17 16 35 35 H 1.09001 * 110.76054 * 279.63379 * 19 18 17 36 36 H 1.08998 * 110.91919 * 156.33079 * 19 18 17 37 37 H 1.08998 * 110.48842 * 203.37341 * 20 19 18 38 38 H 1.09010 * 110.48303 * 80.73647 * 20 19 18 39 39 H 1.09002 * 110.03375 * 238.57102 * 21 17 16 40 40 H 1.08999 * 110.03283 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0196 -0.6926 1.1993 13 6 2.1348 0.2349 2.3327 14 1 2.1834 1.2585 1.9610 15 6 0.9157 0.0806 3.2440 16 6 3.4060 -0.0812 3.1233 17 6 4.6316 0.1931 2.2496 18 6 4.6918 -0.8224 1.0899 19 6 6.2031 -1.1156 0.9198 20 6 6.7157 -1.1271 2.3814 21 6 5.9184 -0.0006 3.0708 22 1 -0.3634 -1.0272 -0.0301 23 1 -0.3633 0.4876 0.9046 24 1 -0.3633 0.5397 -0.8746 25 1 0.7088 1.1614 -3.4844 26 1 1.4275 -1.4757 1.4318 27 1 0.0208 0.4020 2.7113 28 1 0.8096 -0.9646 3.5350 29 1 1.0481 0.6941 4.1352 30 1 3.3983 -1.1303 3.4193 31 1 3.4461 0.5470 4.0131 32 1 4.5893 1.2086 1.8558 33 1 4.1536 -1.7333 1.3521 34 1 4.2830 -0.3856 0.1787 35 1 6.6879 -0.3252 0.3467 36 1 6.3607 -2.0853 0.4476 37 1 7.7839 -0.9127 2.4127 38 1 6.5044 -2.0873 2.8522 39 1 6.5011 0.9206 3.0748 40 1 5.6698 -0.2905 4.0917 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379572463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = -28.438420 kcal Electronic energy + Delta-G solvation = -16662.491330 eV Core-core repulsion = 14282.833514 eV Total energy + Delta-G solvation = -2379.657816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.34286 -36.20905 -33.35671 -31.04339 -29.08847 -28.07374 -26.86011 -25.00070 -24.42830 -20.38184 -20.14338 -19.99053 -18.97649 -16.20057 -15.21322 -15.01912 -14.55373 -14.32534 -13.67713 -13.04948 -12.74347 -12.72731 -12.34973 -12.04845 -11.85666 -11.58140 -11.30666 -10.86156 -10.84278 -10.68571 -10.48523 -10.37614 -10.25090 -10.12859 -10.10572 -9.96873 -9.86381 -9.68225 -9.57063 -8.81775 -8.30113 -7.03569 -5.92928 -3.95071 3.37185 3.41226 3.44635 4.48338 5.08823 5.18426 5.20355 5.30934 5.38360 5.50768 5.72008 5.87319 5.90884 5.97332 6.07129 6.10671 6.15952 6.24169 6.33504 6.34441 6.41030 6.42835 6.54932 6.61617 6.73463 6.78722 6.86149 6.89348 6.97501 7.18075 7.30858 7.47311 7.54033 7.80718 7.96730 8.36934 8.65016 8.72090 9.12584 9.69938 11.13987 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.009630 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.488853 B = 2906.930191 C = 3923.834389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.214 3.786 3 H 0.030 0.970 4 C -0.489 4.489 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.291 1.291 11 H -0.277 1.277 12 N -0.671 5.671 13 C 0.081 3.919 14 H 0.064 0.936 15 C -0.176 4.176 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.092 4.092 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.122 4.122 22 H 0.026 0.974 23 H 0.007 0.993 24 H 0.084 0.916 25 H 0.258 0.742 26 H 0.323 0.677 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 -1.680 10.044 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.106 3.894 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.203 1.203 12 N -0.300 5.300 13 C -0.030 4.030 14 H 0.082 0.918 15 C -0.235 4.235 16 C -0.132 4.132 17 C -0.099 4.099 18 C -0.129 4.129 19 C -0.173 4.173 20 C -0.160 4.160 21 C -0.159 4.159 22 H 0.045 0.955 23 H 0.026 0.974 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.083 -1.496 9.712 11.557 hybrid contribution -0.744 -0.213 -0.619 0.992 sum 5.339 -1.709 9.093 10.682 Atomic orbital electron populations 1.22521 1.01057 0.99287 1.00069 1.19230 0.89334 0.94038 0.86780 0.95164 1.21141 1.29856 1.12227 0.89531 0.91901 1.24947 0.95462 0.95214 0.98956 1.69882 1.37492 1.23257 1.23247 0.86642 0.79208 0.79618 0.82382 1.20500 1.21644 1.20316 1.60974 1.55769 1.09701 1.03556 1.21613 0.92606 0.97205 0.91594 0.91761 1.22563 0.99853 1.01095 0.99975 1.21688 0.94592 1.00482 0.96462 1.21613 0.92646 0.99819 0.95871 1.22369 0.92232 0.99293 0.99028 1.22653 0.98893 1.00519 0.95238 1.22332 0.98305 0.98449 0.96903 1.22257 0.96869 0.97993 0.98815 0.95482 0.97422 0.89707 0.93183 0.86028 0.92561 0.93058 0.93462 0.92484 0.93613 0.92286 0.90862 0.89313 0.92589 0.92549 0.93024 0.92334 0.92913 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.86 37.16 0.33 -3.69 16 2 C 0.21 5.14 2.28 -68.86 -0.16 4.99 16 3 H 0.03 0.82 7.29 -51.93 -0.38 0.44 16 4 C -0.49 -13.01 7.93 -34.44 -0.27 -13.28 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.59 11.34 55.43 0.63 -24.96 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.67 -13.29 3.25 -100.96 -0.33 -13.62 16 13 C 0.08 1.39 2.63 -67.72 -0.18 1.21 16 14 H 0.06 1.23 7.17 -51.93 -0.37 0.86 16 15 C -0.18 -2.67 9.05 37.15 0.34 -2.34 16 16 C -0.09 -1.43 4.16 -26.73 -0.11 -1.54 16 17 C -0.08 -1.29 2.93 -89.50 -0.26 -1.56 16 18 C -0.09 -1.63 4.69 -25.07 -0.12 -1.75 16 19 C -0.14 -2.11 6.91 -24.74 -0.17 -2.28 16 20 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 21 C -0.12 -1.66 6.46 -25.61 -0.17 -1.83 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.01 0.15 6.01 -51.93 -0.31 -0.16 16 24 H 0.08 2.25 6.12 -51.93 -0.32 1.93 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.32 6.27 7.89 -39.30 -0.31 5.96 16 27 H 0.06 0.91 6.11 -51.93 -0.32 0.60 16 28 H 0.05 0.73 8.02 -51.93 -0.42 0.32 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.87 8.00 -51.92 -0.42 0.45 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.36 7.04 -51.93 -0.37 0.99 16 34 H 0.09 1.91 6.61 -51.93 -0.34 1.57 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -26.47 300.82 -8.52 -34.99 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.30 Total: 5.10 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.04 Total: -22.49 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.30 Total: -38.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.47 -8.52 -34.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379572463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.551 kcal (2) G-P(sol) polarization free energy of solvation -26.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds