Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47414 * 2 1 4 4 C 1.50705 * 109.47011 * 239.99968 * 2 1 3 5 5 H 1.07990 * 120.00263 * 240.00501 * 4 2 1 6 6 C 1.37883 * 119.99734 * 59.99876 * 4 2 1 7 7 N 1.31515 * 119.99800 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99745 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46943 * 60.00497 * 8 6 4 10 10 H 1.48502 * 109.46888 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47222 * 300.00175 * 8 6 4 12 12 N 1.46895 * 109.47036 * 120.00568 * 2 1 3 13 13 C 1.46907 * 110.99905 * 272.67228 * 12 2 1 14 14 H 1.09003 * 109.46579 * 339.73416 * 13 12 2 15 15 C 1.52991 * 109.47366 * 99.73452 * 13 12 2 16 16 C 1.52996 * 109.47281 * 219.74308 * 13 12 2 17 17 C 1.52999 * 109.47541 * 64.99389 * 16 13 12 18 18 C 1.54268 * 110.03187 * 292.16819 * 17 16 13 19 19 C 1.54886 * 104.19686 * 217.10191 * 18 17 16 20 20 C 1.54893 * 102.74767 * 37.94267 * 19 18 17 21 21 C 1.53878 * 110.03339 * 175.00164 * 17 16 13 22 22 H 1.08999 * 109.47611 * 178.32288 * 1 2 3 23 23 H 1.08998 * 109.46889 * 298.32672 * 1 2 3 24 24 H 1.09001 * 109.46996 * 58.31999 * 1 2 3 25 25 H 0.97000 * 119.99340 * 180.02562 * 7 6 4 26 26 H 1.00890 * 111.00246 * 36.62244 * 12 2 1 27 27 H 1.08994 * 109.47644 * 294.34577 * 15 13 12 28 28 H 1.09007 * 109.46995 * 54.34545 * 15 13 12 29 29 H 1.08997 * 109.47588 * 174.34076 * 15 13 12 30 30 H 1.09007 * 109.47031 * 304.99578 * 16 13 12 31 31 H 1.08995 * 109.47141 * 185.00171 * 16 13 12 32 32 H 1.08995 * 110.01571 * 53.61195 * 17 16 13 33 33 H 1.09000 * 110.48880 * 335.78551 * 18 17 16 34 34 H 1.09005 * 110.48408 * 98.42660 * 18 17 16 35 35 H 1.09001 * 110.76054 * 279.63379 * 19 18 17 36 36 H 1.08998 * 110.91919 * 156.33079 * 19 18 17 37 37 H 1.08998 * 110.48842 * 203.37341 * 20 19 18 38 38 H 1.09010 * 110.48303 * 80.73647 * 20 19 18 39 39 H 1.09002 * 110.03375 * 238.57102 * 21 17 16 40 40 H 1.08999 * 110.03283 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0196 -0.6926 1.1993 13 6 2.1348 0.2349 2.3327 14 1 2.1834 1.2585 1.9610 15 6 0.9157 0.0806 3.2440 16 6 3.4060 -0.0812 3.1233 17 6 4.6316 0.1931 2.2496 18 6 4.6918 -0.8224 1.0899 19 6 6.2031 -1.1156 0.9198 20 6 6.7157 -1.1271 2.3814 21 6 5.9184 -0.0006 3.0708 22 1 -0.3634 -1.0272 -0.0301 23 1 -0.3633 0.4876 0.9046 24 1 -0.3633 0.5397 -0.8746 25 1 0.7088 1.1614 -3.4844 26 1 1.4275 -1.4757 1.4318 27 1 0.0208 0.4020 2.7113 28 1 0.8096 -0.9646 3.5350 29 1 1.0481 0.6941 4.1352 30 1 3.3983 -1.1303 3.4193 31 1 3.4461 0.5470 4.0131 32 1 4.5893 1.2086 1.8558 33 1 4.1536 -1.7333 1.3521 34 1 4.2830 -0.3856 0.1787 35 1 6.6879 -0.3252 0.3467 36 1 6.3607 -2.0853 0.4476 37 1 7.7839 -0.9127 2.4127 38 1 6.5044 -2.0873 2.8522 39 1 6.5011 0.9206 3.0748 40 1 5.6698 -0.2905 4.0917 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379572463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = -41.682635 kcal Electronic energy + Delta-G solvation = -16663.065642 eV Core-core repulsion = 14282.833514 eV Total energy + Delta-G solvation = -2380.232128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70310 -37.74152 -35.18858 -32.81649 -30.45028 -29.35040 -28.51846 -27.08880 -25.68167 -22.25227 -21.63136 -21.23772 -20.25106 -18.20681 -16.86471 -16.49609 -16.00190 -15.89350 -15.24239 -14.56449 -14.18955 -14.08758 -13.94753 -13.69122 -13.22313 -13.13265 -12.80524 -12.77593 -12.72702 -12.22892 -12.09157 -11.90481 -11.81262 -11.66265 -11.50073 -11.42078 -11.23205 -11.07985 -11.02104 -10.71590 -10.42222 -8.68568 -8.03686 -6.12169 1.43245 1.44425 1.51585 2.46613 3.24669 3.76369 3.86707 3.99140 4.02581 4.26857 4.43385 4.54961 4.67338 4.77434 4.79096 4.83929 4.87898 4.94436 4.98966 5.03251 5.06504 5.14045 5.17169 5.20422 5.28280 5.31618 5.41755 5.46088 5.54435 5.55749 5.67294 5.77163 5.88209 5.93673 6.01264 6.37569 6.78596 6.98078 7.07241 7.57111 9.01452 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.009630 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.488853 B = 2906.930191 C = 3923.834389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.225 3.775 3 H -0.007 1.007 4 C -0.496 4.496 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.078 3.922 14 H 0.038 0.962 15 C -0.168 4.168 16 C -0.085 4.085 17 C -0.083 4.083 18 C -0.088 4.088 19 C -0.137 4.137 20 C -0.115 4.115 21 C -0.116 4.116 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.257 0.743 26 H 0.328 0.672 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 -2.716 11.852 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.116 3.884 3 H 0.011 0.989 4 C -0.535 4.535 5 H 0.075 0.925 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.201 1.201 12 N -0.296 5.296 13 C -0.032 4.032 14 H 0.056 0.944 15 C -0.226 4.226 16 C -0.123 4.123 17 C -0.101 4.101 18 C -0.126 4.126 19 C -0.175 4.175 20 C -0.152 4.152 21 C -0.153 4.153 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.145 0.855 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.053 -2.541 11.539 13.761 hybrid contribution -1.040 0.137 -1.159 1.564 sum 6.013 -2.404 10.380 12.234 Atomic orbital electron populations 1.22343 1.00578 0.99100 0.99668 1.18903 0.89438 0.92041 0.88002 0.98882 1.21419 1.29340 1.11939 0.90764 0.92522 1.25669 0.95829 0.95950 1.01730 1.70020 1.38617 1.24501 1.23602 0.85714 0.78621 0.78772 0.79110 1.19744 1.21473 1.20089 1.60867 1.55343 1.10012 1.03368 1.21675 0.95143 0.95149 0.91257 0.94391 1.22447 0.97712 1.02446 1.00036 1.21623 0.92670 1.01446 0.96570 1.21598 0.94813 0.97916 0.95805 1.22184 0.93623 0.98993 0.97754 1.22642 0.97208 1.00370 0.97261 1.22300 0.99291 0.98927 0.94713 1.22210 0.95326 0.98586 0.99180 0.95198 0.95331 0.92725 0.93392 0.85514 0.94013 0.91664 0.91116 0.91602 0.91178 0.94449 0.91710 0.93988 0.93171 0.92375 0.91168 0.91336 0.92113 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.56 8.86 71.98 0.64 -6.93 16 2 C 0.23 11.16 2.28 44.17 0.10 11.26 16 3 H -0.01 -0.38 7.29 -2.39 -0.02 -0.40 16 4 C -0.50 -27.11 7.93 25.60 0.20 -26.90 16 5 H 0.06 3.11 7.81 -2.92 -0.02 3.08 16 6 C 0.01 0.31 5.30 84.66 0.45 0.76 16 7 N -0.93 -54.24 11.34 21.45 0.24 -54.00 16 8 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 N -0.67 -26.59 3.25 -473.31 -1.54 -28.13 16 13 C 0.08 2.64 2.63 44.91 0.12 2.76 16 14 H 0.04 1.49 7.17 -2.39 -0.02 1.47 16 15 C -0.17 -4.73 9.05 71.98 0.65 -4.07 16 16 C -0.09 -2.41 4.16 30.59 0.13 -2.29 16 17 C -0.08 -2.57 2.93 -10.07 -0.03 -2.60 16 18 C -0.09 -3.15 4.69 31.67 0.15 -3.00 16 19 C -0.14 -4.16 6.91 31.89 0.22 -3.94 16 20 C -0.11 -2.76 6.83 31.67 0.22 -2.55 16 21 C -0.12 -2.82 6.46 31.32 0.20 -2.62 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.03 1.21 6.01 -2.39 -0.01 1.19 16 24 H 0.05 2.97 6.12 -2.39 -0.01 2.95 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.33 12.50 7.89 -89.70 -0.71 11.79 16 27 H 0.04 1.29 6.11 -2.39 -0.01 1.27 16 28 H 0.06 1.67 8.02 -2.38 -0.02 1.65 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.79 8.00 -2.38 -0.02 1.77 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 2.39 7.04 -2.39 -0.02 2.37 16 34 H 0.04 1.88 6.61 -2.38 -0.02 1.87 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.57 7.67 -2.39 -0.02 1.55 16 Total: -1.00 -58.20 300.82 4.05 -54.15 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.28 Total: 21.37 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 3.05 Total: -40.11 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.30 Total: -82.13 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -58.20 4.05 -54.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379572463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.469 kcal (2) G-P(sol) polarization free energy of solvation -58.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds