Wall clock time and date at job start Mon Mar 30 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47593 * 2 1 4 4 C 1.50702 * 109.47050 * 119.99592 * 2 1 3 5 5 H 1.08004 * 120.00166 * 119.99383 * 4 2 1 6 6 C 1.37879 * 119.99953 * 300.00641 * 4 2 1 7 7 N 1.31505 * 120.00036 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99728 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47354 * 89.99779 * 8 6 4 10 10 H 1.48504 * 109.46842 * 209.99170 * 8 6 4 11 11 H 1.48494 * 109.47327 * 329.99075 * 8 6 4 12 12 N 1.46895 * 109.47241 * 239.99363 * 2 1 3 13 13 C 1.46899 * 110.99732 * 85.00404 * 12 2 1 14 14 H 1.09006 * 109.47339 * 324.99926 * 13 12 2 15 15 C 1.53001 * 109.47607 * 85.00208 * 13 12 2 16 16 C 1.53000 * 109.47433 * 204.99951 * 13 12 2 17 17 C 1.53003 * 109.46931 * 64.99855 * 16 13 12 18 18 C 1.53876 * 110.03313 * 185.00498 * 17 16 13 19 19 C 1.54267 * 106.59870 * 240.71577 * 18 17 16 20 20 C 1.54891 * 104.19324 * 336.39035 * 19 18 17 21 21 C 1.54261 * 110.03320 * 67.83568 * 17 16 13 22 22 H 1.09003 * 109.47593 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47346 * 300.00523 * 1 2 3 24 24 H 1.09004 * 109.46815 * 60.00441 * 1 2 3 25 25 H 0.97001 * 120.00265 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00152 * 321.04936 * 12 2 1 27 27 H 1.08995 * 109.47642 * 180.02562 * 15 13 12 28 28 H 1.09006 * 109.46591 * 299.99965 * 15 13 12 29 29 H 1.08997 * 109.46955 * 59.99728 * 15 13 12 30 30 H 1.09005 * 109.46873 * 305.00233 * 16 13 12 31 31 H 1.08991 * 109.47720 * 184.99939 * 16 13 12 32 32 H 1.08998 * 110.05508 * 306.41579 * 17 16 13 33 33 H 1.08995 * 110.03160 * 359.97438 * 18 17 16 34 34 H 1.08998 * 110.03319 * 121.42855 * 18 17 16 35 35 H 1.09004 * 110.48597 * 95.06674 * 19 18 17 36 36 H 1.08994 * 110.48679 * 217.71200 * 19 18 17 37 37 H 1.09005 * 110.75269 * 279.62515 * 20 19 18 38 38 H 1.09004 * 110.91555 * 156.33330 * 20 19 18 39 39 H 1.09000 * 110.48928 * 261.57322 * 21 17 16 40 40 H 1.08999 * 110.48469 * 24.21732 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8302 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5661 3.7122 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 3.4112 0.9807 -2.3224 16 6 1.9771 -0.5798 -3.6453 17 6 0.5984 -1.2381 -3.7276 18 6 0.5220 -2.1486 -4.9657 19 6 -0.6118 -1.5931 -5.8520 20 6 -1.5164 -0.8122 -4.8665 21 6 -0.4917 -0.1611 -3.9047 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7092 1.1619 3.4843 26 1 1.4495 -1.4980 -1.4099 27 1 3.4576 1.6600 -3.1735 28 1 3.4863 1.5523 -1.3973 29 1 4.2360 0.2703 -2.3785 30 1 2.7488 -1.3496 -3.6604 31 1 2.1126 0.0871 -4.4966 32 1 0.4068 -1.8185 -2.8250 33 1 1.4670 -2.1212 -5.5082 34 1 0.2934 -3.1708 -4.6640 35 1 -0.2088 -0.9236 -6.6120 36 1 -1.1675 -2.4079 -6.3159 37 1 -2.1757 -1.4917 -4.3262 38 1 -2.0942 -0.0499 -5.3892 39 1 -0.9597 0.0690 -2.9475 40 1 -0.0693 0.7396 -4.3501 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379572464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:32 Heat of formation + Delta-G solvation = -33.697258 kcal Electronic energy + Delta-G solvation = -16374.687829 eV Core-core repulsion = 13994.801972 eV Total energy + Delta-G solvation = -2379.885856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.73482 -36.26587 -33.37995 -31.04461 -29.32537 -28.57740 -26.87958 -25.07406 -24.60692 -20.96378 -20.42414 -19.77105 -18.93405 -16.37128 -15.59719 -15.05343 -14.98894 -14.56204 -13.88959 -13.25544 -13.11061 -12.71757 -12.32807 -12.04929 -11.66964 -11.52680 -11.24960 -11.22272 -11.04209 -10.91006 -10.81553 -10.72069 -10.58340 -10.42920 -10.26426 -10.17717 -10.05773 -9.88503 -9.56240 -8.87958 -8.29921 -7.10289 -5.92787 -3.95432 3.36010 3.41930 3.46330 4.48752 4.68783 4.75584 4.83875 5.28454 5.33204 5.38781 5.49279 5.54392 5.68344 5.73358 5.76633 5.84522 5.95102 5.97620 6.02259 6.12858 6.15832 6.29839 6.32093 6.38408 6.44570 6.55808 6.68597 6.73967 6.79313 6.91475 6.93580 7.20637 7.49404 7.81251 7.97112 8.37620 8.66970 8.74126 9.12440 9.69829 11.14259 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037668 B = 0.006342 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.160400 B = 4414.205300 C = 4637.605698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.492 4.492 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.680 5.680 13 C 0.082 3.918 14 H 0.035 0.965 15 C -0.135 4.135 16 C -0.110 4.110 17 C -0.095 4.095 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.120 4.120 22 H 0.025 0.975 23 H 0.087 0.913 24 H 0.005 0.995 25 H 0.258 0.742 26 H 0.324 0.676 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -2.405 -14.301 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.531 4.531 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.029 4.029 14 H 0.053 0.947 15 C -0.193 4.193 16 C -0.148 4.148 17 C -0.114 4.114 18 C -0.157 4.157 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.157 4.157 22 H 0.044 0.956 23 H 0.105 0.895 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.142 0.858 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.684 -2.214 -13.990 14.264 hybrid contribution -0.711 -0.271 0.757 1.073 sum -2.395 -2.485 -13.233 13.676 Atomic orbital electron populations 1.22434 1.00924 0.98945 1.00338 1.19168 0.89375 0.94402 0.86683 0.94947 1.21192 1.29888 1.12297 0.89729 0.92084 1.24948 0.95419 0.95251 0.98983 1.69885 1.37501 1.23307 1.23185 0.86537 0.78416 0.80041 0.82598 1.20829 1.21494 1.19993 1.60882 1.58039 1.08927 1.03370 1.21431 0.96522 0.94446 0.90482 0.94698 1.21757 0.97733 0.99301 1.00533 1.21874 0.96090 0.99331 0.97504 1.21824 0.95257 0.96219 0.98088 1.22210 0.98450 0.98954 0.96103 1.22343 0.96796 0.99233 0.97720 1.22501 0.97536 0.99066 0.97232 1.22467 0.95897 0.97923 0.99459 0.95600 0.89480 0.97559 0.93187 0.85758 0.94133 0.92502 0.92709 0.91606 0.92337 0.90730 0.91920 0.92122 0.92013 0.92241 0.91735 0.92081 0.91501 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.92 37.16 0.33 -3.73 16 2 C 0.21 5.37 2.38 -68.87 -0.16 5.21 16 3 H 0.03 0.91 7.11 -51.93 -0.37 0.54 16 4 C -0.49 -13.83 8.84 -34.44 -0.30 -14.14 16 5 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.09 11.32 55.43 0.63 -25.46 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.68 -14.54 6.04 -100.95 -0.61 -15.15 16 13 C 0.08 1.47 2.38 -67.71 -0.16 1.31 16 14 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 15 C -0.14 -2.36 9.40 37.16 0.35 -2.01 16 16 C -0.11 -1.60 3.93 -26.73 -0.11 -1.71 16 17 C -0.10 -1.31 2.83 -89.50 -0.25 -1.56 16 18 C -0.12 -1.39 6.46 -25.61 -0.17 -1.55 16 19 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 20 C -0.13 -1.43 6.91 -24.74 -0.17 -1.60 16 21 C -0.12 -1.61 5.46 -25.08 -0.14 -1.75 16 22 H 0.02 0.60 8.13 -51.93 -0.42 0.18 16 23 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 24 H 0.01 0.12 6.63 -51.93 -0.34 -0.22 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.32 6.64 6.16 -39.29 -0.24 6.40 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.11 7.43 -51.93 -0.39 0.73 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 32 H 0.07 1.15 6.30 -51.93 -0.33 0.83 16 33 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.01 7.34 -51.93 -0.38 0.63 16 40 H 0.06 0.84 7.76 -51.93 -0.40 0.44 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -28.25 304.05 -8.73 -36.98 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.26 Total: 3.81 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -1.05 Total: -21.57 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.02 Total: -40.61 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.25 -8.73 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379572464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.280 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds