Wall clock time and date at job start Mon Mar 30 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47593 * 2 1 4 4 C 1.50702 * 109.47050 * 119.99592 * 2 1 3 5 5 H 1.08004 * 120.00166 * 119.99383 * 4 2 1 6 6 C 1.37879 * 119.99953 * 300.00641 * 4 2 1 7 7 N 1.31505 * 120.00036 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99728 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47354 * 89.99779 * 8 6 4 10 10 H 1.48504 * 109.46842 * 209.99170 * 8 6 4 11 11 H 1.48494 * 109.47327 * 329.99075 * 8 6 4 12 12 N 1.46895 * 109.47241 * 239.99363 * 2 1 3 13 13 C 1.46899 * 110.99732 * 85.00404 * 12 2 1 14 14 H 1.09006 * 109.47339 * 324.99926 * 13 12 2 15 15 C 1.53001 * 109.47607 * 85.00208 * 13 12 2 16 16 C 1.53000 * 109.47433 * 204.99951 * 13 12 2 17 17 C 1.53003 * 109.46931 * 64.99855 * 16 13 12 18 18 C 1.53876 * 110.03313 * 185.00498 * 17 16 13 19 19 C 1.54267 * 106.59870 * 240.71577 * 18 17 16 20 20 C 1.54891 * 104.19324 * 336.39035 * 19 18 17 21 21 C 1.54261 * 110.03320 * 67.83568 * 17 16 13 22 22 H 1.09003 * 109.47593 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47346 * 300.00523 * 1 2 3 24 24 H 1.09004 * 109.46815 * 60.00441 * 1 2 3 25 25 H 0.97001 * 120.00265 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00152 * 321.04936 * 12 2 1 27 27 H 1.08995 * 109.47642 * 180.02562 * 15 13 12 28 28 H 1.09006 * 109.46591 * 299.99965 * 15 13 12 29 29 H 1.08997 * 109.46955 * 59.99728 * 15 13 12 30 30 H 1.09005 * 109.46873 * 305.00233 * 16 13 12 31 31 H 1.08991 * 109.47720 * 184.99939 * 16 13 12 32 32 H 1.08998 * 110.05508 * 306.41579 * 17 16 13 33 33 H 1.08995 * 110.03160 * 359.97438 * 18 17 16 34 34 H 1.08998 * 110.03319 * 121.42855 * 18 17 16 35 35 H 1.09004 * 110.48597 * 95.06674 * 19 18 17 36 36 H 1.08994 * 110.48679 * 217.71200 * 19 18 17 37 37 H 1.09005 * 110.75269 * 279.62515 * 20 19 18 38 38 H 1.09004 * 110.91555 * 156.33330 * 20 19 18 39 39 H 1.09000 * 110.48928 * 261.57322 * 21 17 16 40 40 H 1.08999 * 110.48469 * 24.21732 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8302 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5661 3.7122 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 1 1.2577 0.9328 -2.2907 15 6 3.4112 0.9807 -2.3224 16 6 1.9771 -0.5798 -3.6453 17 6 0.5984 -1.2381 -3.7276 18 6 0.5220 -2.1486 -4.9657 19 6 -0.6118 -1.5931 -5.8520 20 6 -1.5164 -0.8122 -4.8665 21 6 -0.4917 -0.1611 -3.9047 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7092 1.1619 3.4843 26 1 1.4495 -1.4980 -1.4099 27 1 3.4576 1.6600 -3.1735 28 1 3.4863 1.5523 -1.3973 29 1 4.2360 0.2703 -2.3785 30 1 2.7488 -1.3496 -3.6604 31 1 2.1126 0.0871 -4.4966 32 1 0.4068 -1.8185 -2.8250 33 1 1.4670 -2.1212 -5.5082 34 1 0.2934 -3.1708 -4.6640 35 1 -0.2088 -0.9236 -6.6120 36 1 -1.1675 -2.4079 -6.3159 37 1 -2.1757 -1.4917 -4.3262 38 1 -2.0942 -0.0499 -5.3892 39 1 -0.9597 0.0690 -2.9475 40 1 -0.0693 0.7396 -4.3501 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379572464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:31 Heat of formation + Delta-G solvation = -49.368665 kcal Electronic energy + Delta-G solvation = -16375.367392 eV Core-core repulsion = 13994.801972 eV Total energy + Delta-G solvation = -2380.565420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92122 -37.78827 -35.23155 -32.85457 -30.57564 -29.53434 -28.68375 -27.21899 -25.79338 -22.53270 -21.80435 -21.00592 -20.18205 -18.37341 -16.94447 -16.71590 -16.32471 -16.00619 -15.40940 -14.63505 -14.48007 -14.17427 -13.85550 -13.66545 -13.31623 -13.00933 -12.86161 -12.77028 -12.74000 -12.34550 -12.22092 -12.03758 -11.91770 -11.81620 -11.80994 -11.48526 -11.44795 -11.24995 -10.97069 -10.91236 -10.46886 -8.88117 -8.08497 -6.19505 1.42495 1.42788 1.53887 2.44485 3.19538 3.64608 3.75445 3.79536 3.83798 4.19579 4.35530 4.47279 4.58993 4.66555 4.70234 4.73234 4.76954 4.83862 4.87835 4.89935 4.97877 5.03674 5.06276 5.11657 5.14073 5.20109 5.29707 5.36156 5.43731 5.47397 5.50150 5.54891 5.59803 5.70905 5.87423 6.31544 6.72446 6.91303 7.00414 7.50854 8.97051 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037668 B = 0.006342 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.160400 B = 4414.205300 C = 4637.605698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.683 5.683 13 C 0.080 3.920 14 H 0.021 0.979 15 C -0.132 4.132 16 C -0.099 4.099 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.023 0.977 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -3.264 -15.830 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.315 5.315 13 C -0.030 4.030 14 H 0.039 0.961 15 C -0.190 4.190 16 C -0.136 4.136 17 C -0.115 4.115 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.159 4.159 22 H 0.046 0.954 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.499 -3.079 -15.536 15.909 hybrid contribution -0.763 0.037 1.206 1.428 sum -2.262 -3.042 -14.330 14.823 Atomic orbital electron populations 1.22212 1.00271 0.98801 0.99769 1.18888 0.89698 0.92569 0.87823 0.98348 1.21488 1.30190 1.12347 0.91231 0.92909 1.25728 0.95509 0.95921 1.01907 1.70015 1.38180 1.24374 1.23879 0.85525 0.77918 0.79062 0.78899 1.20369 1.20894 1.19366 1.60777 1.57692 1.09484 1.03531 1.21537 0.96311 0.94174 0.91022 0.96088 1.21735 0.97442 0.99507 1.00280 1.21787 0.96707 0.99247 0.95898 1.21798 0.94787 0.96464 0.98415 1.22183 0.99577 0.98462 0.95169 1.22333 0.96142 0.99678 0.97375 1.22499 0.97256 0.99339 0.97038 1.22449 0.96426 0.98223 0.98822 0.95372 0.92262 0.95781 0.93090 0.85212 0.90990 0.95628 0.92441 0.91356 0.90156 0.92970 0.90866 0.91929 0.90953 0.90803 0.92099 0.90871 0.94049 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.52 8.92 71.98 0.64 -6.88 16 2 C 0.22 11.43 2.38 44.17 0.11 11.53 16 3 H 0.00 -0.08 7.11 -2.39 -0.02 -0.10 16 4 C -0.51 -29.40 8.84 25.60 0.23 -29.18 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.41 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.61 11.32 21.45 0.24 -54.37 16 8 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.68 -29.51 6.04 -473.31 -2.86 -32.37 16 13 C 0.08 2.83 2.38 44.92 0.11 2.94 16 14 H 0.02 0.82 6.34 -2.38 -0.02 0.80 16 15 C -0.13 -4.52 9.40 71.98 0.68 -3.85 16 16 C -0.10 -2.69 3.93 30.60 0.12 -2.57 16 17 C -0.10 -2.50 2.83 -10.07 -0.03 -2.53 16 18 C -0.12 -2.39 6.46 31.32 0.20 -2.19 16 19 C -0.12 -2.10 6.83 31.67 0.22 -1.88 16 20 C -0.12 -2.56 6.91 31.89 0.22 -2.34 16 21 C -0.12 -3.13 5.46 31.67 0.17 -2.96 16 22 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 23 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 24 H 0.02 1.06 6.63 -2.38 -0.02 1.05 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.33 13.57 6.16 -89.70 -0.55 13.02 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.02 1.01 7.43 -2.38 -0.02 0.99 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.08 1.87 8.00 -2.39 -0.02 1.85 16 32 H 0.05 1.59 6.30 -2.39 -0.02 1.58 16 33 H 0.07 1.36 7.67 -2.39 -0.02 1.35 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.04 1.25 7.34 -2.39 -0.02 1.24 16 40 H 0.07 1.67 7.76 -2.39 -0.02 1.65 16 Total: -1.00 -60.91 304.05 2.95 -57.95 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.43 Total: 20.79 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 3.11 Total: -39.03 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.62 Total: -86.74 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -60.91 2.95 -57.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379572464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.585 kcal (2) G-P(sol) polarization free energy of solvation -60.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds