Wall clock time and date at job start Mon Mar 30 2020 02:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46521 * 2 1 4 4 C 1.52996 * 109.47230 * 240.00731 * 2 1 3 5 5 C 1.52995 * 109.47158 * 174.99885 * 4 2 1 6 6 C 1.54266 * 110.03271 * 292.16302 * 5 4 2 7 7 C 1.54893 * 104.20146 * 217.10582 * 6 5 4 8 8 C 1.54891 * 102.74531 * 37.93826 * 7 6 5 9 9 C 1.53876 * 110.03340 * 174.99826 * 5 4 2 10 10 N 1.46894 * 109.47206 * 120.00074 * 2 1 3 11 11 C 1.46903 * 111.00343 * 275.97819 * 10 2 1 12 12 H 1.08997 * 109.46718 * 33.95574 * 11 10 2 13 13 C 1.52999 * 109.47041 * 153.95627 * 11 10 2 14 14 C 1.50701 * 109.46687 * 273.95760 * 11 10 2 15 15 H 1.07998 * 120.00280 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99638 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00022 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99925 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47174 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46925 * 120.00168 * 18 16 14 21 21 H 1.48505 * 109.47060 * 240.00087 * 18 16 14 22 22 H 1.09000 * 109.47261 * 55.28846 * 1 2 3 23 23 H 1.09003 * 109.46592 * 175.28612 * 1 2 3 24 24 H 1.08993 * 109.47382 * 295.28231 * 1 2 3 25 25 H 1.09000 * 109.47276 * 294.99450 * 4 2 1 26 26 H 1.09001 * 109.47588 * 54.99345 * 4 2 1 27 27 H 1.09003 * 110.02256 * 53.60495 * 5 4 2 28 28 H 1.08999 * 110.48437 * 335.78344 * 6 5 4 29 29 H 1.09002 * 110.48943 * 98.42572 * 6 5 4 30 30 H 1.08998 * 110.75270 * 279.62971 * 7 6 5 31 31 H 1.08993 * 110.75747 * 156.25597 * 7 6 5 32 32 H 1.08999 * 110.49085 * 203.37946 * 8 7 6 33 33 H 1.09009 * 110.48270 * 80.73864 * 8 7 6 34 34 H 1.08999 * 110.03383 * 238.56341 * 9 5 4 35 35 H 1.08996 * 110.03202 * 0.02562 * 9 5 4 36 36 H 1.00900 * 110.99622 * 152.02064 * 10 2 1 37 37 H 1.09002 * 109.46497 * 186.34417 * 13 11 10 38 38 H 1.08996 * 109.47085 * 306.34281 * 13 11 10 39 39 H 1.09004 * 109.47101 * 66.34966 * 13 11 10 40 40 H 0.96997 * 119.99895 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 6 3.9805 0.8498 -1.5728 7 6 5.2085 0.7356 -2.5099 8 6 4.8258 -0.4486 -3.4319 9 6 4.1023 -1.4386 -2.4958 10 7 2.0197 -0.6925 1.1994 11 6 2.0606 0.2167 2.3525 12 1 1.2372 0.9276 2.2839 13 6 1.9298 -0.5922 3.6446 14 6 3.3697 0.9632 2.3574 15 1 4.0986 0.7802 1.5817 16 6 3.6368 1.8798 3.3521 17 7 2.7494 2.1023 4.2969 18 14 5.2598 2.8047 3.3586 19 1 6.0787 2.3756 2.1965 20 1 4.9985 4.2636 3.2678 21 1 5.9923 2.5103 4.6165 22 1 -0.3634 0.5852 -0.8448 23 1 -0.3632 -1.0242 -0.0845 24 1 -0.3634 0.4389 0.9292 25 1 1.7518 -1.7714 -1.2058 26 1 1.6054 -0.2616 -2.1370 27 1 4.0038 -0.9671 -0.3809 28 1 3.1744 1.3939 -2.0649 29 1 4.2575 1.3388 -0.6388 30 1 6.1090 0.5062 -1.9402 31 1 5.3388 1.6497 -3.0890 32 1 5.7196 -0.9073 -3.8548 33 1 4.1562 -0.1141 -4.2244 34 1 4.8027 -2.1927 -2.1368 35 1 3.2768 -1.9158 -3.0239 36 1 2.9245 -1.1070 1.0334 37 1 1.8468 0.0881 4.4922 38 1 1.0392 -1.2183 3.5927 39 1 2.8104 -1.2224 3.7694 40 1 2.9372 2.7474 4.9965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379572465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:33 Heat of formation + Delta-G solvation = -36.526999 kcal Electronic energy + Delta-G solvation = -16571.237830 eV Core-core repulsion = 14191.229267 eV Total energy + Delta-G solvation = -2380.008563 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.58058 -36.13804 -33.35670 -31.00082 -29.23811 -28.41689 -27.03542 -25.00234 -24.51550 -20.70860 -20.18262 -19.70645 -18.85724 -16.65502 -15.46514 -14.95969 -14.87099 -14.54862 -13.81434 -13.14836 -13.10485 -12.49657 -12.35003 -11.97136 -11.67040 -11.50797 -11.15134 -11.06313 -10.95376 -10.89870 -10.73229 -10.69665 -10.44894 -10.29803 -10.17481 -10.09732 -9.95082 -9.72142 -9.51080 -8.96896 -8.36810 -7.16285 -5.96164 -4.07233 3.27031 3.35687 3.38450 4.42127 4.82270 4.89727 4.96662 5.28651 5.38005 5.45113 5.61169 5.68390 5.79440 5.85205 5.91855 5.96912 6.07235 6.09717 6.13097 6.23312 6.28146 6.40992 6.43819 6.51456 6.56466 6.70759 6.80798 6.86068 6.98267 6.99767 7.21143 7.39316 7.61167 7.80533 8.13565 8.25328 8.41276 8.76821 9.07190 9.60130 11.05471 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.009708 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.218064 B = 2883.538903 C = 3813.229587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.085 3.915 3 H 0.047 0.953 4 C -0.108 4.108 5 C -0.093 4.093 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.123 4.123 9 C -0.120 4.120 10 N -0.688 5.688 11 C 0.207 3.793 12 H 0.031 0.969 13 C -0.123 4.123 14 C -0.538 4.538 15 H 0.055 0.945 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.884 3.116 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.327 0.673 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.024 0.976 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -4.008 -12.008 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 H 0.065 0.935 4 C -0.146 4.146 5 C -0.112 4.112 6 C -0.157 4.157 7 C -0.164 4.164 8 C -0.161 4.161 9 C -0.157 4.157 10 N -0.320 5.320 11 C 0.099 3.901 12 H 0.049 0.951 13 C -0.181 4.181 14 C -0.577 4.577 15 H 0.073 0.927 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.713 3.287 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.527 -4.161 -11.675 12.406 hybrid contribution 1.733 1.196 -0.048 2.106 sum 2.260 -2.965 -11.724 12.302 Atomic orbital electron populations 1.21768 0.96236 1.00714 1.00600 1.21348 0.94367 0.96959 0.89871 0.93457 1.21848 0.94293 1.00684 0.97784 1.21797 0.95913 0.95201 0.98270 1.22456 0.96885 0.96555 0.99814 1.22508 0.98649 0.97678 0.97566 1.22347 0.99467 0.96470 0.97789 1.22218 0.99404 0.97775 0.96321 1.61003 1.31593 1.35105 1.04303 1.19152 0.95643 0.89093 0.86208 0.95091 1.21669 0.96775 0.98666 1.00987 1.21896 1.02888 1.22521 1.10409 0.92695 1.24931 0.96433 0.96716 0.95518 1.69913 1.34308 1.34645 1.13732 0.86660 0.84380 0.79760 0.77939 1.19843 1.21124 1.21052 0.94041 0.93190 0.92696 0.92005 0.92504 0.90590 0.91965 0.90785 0.91788 0.92194 0.92396 0.92105 0.92271 0.92091 0.85472 0.90582 0.96860 0.95726 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.41 37.16 0.35 -2.00 16 2 C 0.09 1.59 2.38 -67.72 -0.16 1.43 16 3 H 0.05 1.00 6.91 -51.93 -0.36 0.64 16 4 C -0.11 -1.66 3.94 -26.74 -0.11 -1.77 16 5 C -0.09 -1.41 2.83 -89.50 -0.25 -1.66 16 6 C -0.12 -1.86 5.46 -25.07 -0.14 -2.00 16 7 C -0.13 -1.68 6.91 -24.74 -0.17 -1.85 16 8 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 9 C -0.12 -1.51 6.46 -25.61 -0.17 -1.68 16 10 N -0.69 -14.63 6.05 -100.96 -0.61 -15.24 16 11 C 0.21 5.21 2.38 -68.86 -0.16 5.04 16 12 H 0.03 0.86 7.03 -51.93 -0.36 0.50 16 13 C -0.12 -3.07 9.20 37.16 0.34 -2.72 16 14 C -0.54 -14.43 8.31 -34.44 -0.29 -14.72 16 15 H 0.05 1.46 7.33 -52.49 -0.38 1.07 16 16 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 17 N -0.89 -25.40 11.39 55.43 0.63 -24.77 16 18 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 1.05 7.32 -51.93 -0.38 0.67 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 27 H 0.08 1.30 6.29 -51.93 -0.33 0.97 16 28 H 0.06 0.94 7.76 -51.93 -0.40 0.54 16 29 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 36 H 0.33 6.88 6.09 -39.29 -0.24 6.64 16 37 H 0.08 2.06 6.27 -51.93 -0.33 1.73 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -27.37 305.84 -8.77 -36.14 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.36 Total: 4.85 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.02 Total: -21.81 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.02 Total: -40.02 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.37 -8.77 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379572465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.391 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds