Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47454 * 2 1 4 4 N 1.46899 * 109.47107 * 120.00077 * 2 1 3 5 5 C 1.46898 * 111.00419 * 275.00325 * 4 2 1 6 6 C 1.52994 * 109.47344 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47137 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47227 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99730 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99651 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00468 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99514 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47259 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47173 * 120.00031 * 12 10 8 15 15 H 1.48498 * 109.47193 * 239.99735 * 12 10 8 16 16 C 1.53004 * 109.47535 * 240.00309 * 2 1 3 17 17 H 1.09001 * 115.54519 * 279.02324 * 16 2 1 18 18 C 1.52994 * 117.49880 * 64.68752 * 16 2 1 19 19 C 1.52991 * 117.50174 * 133.35039 * 16 2 1 20 20 C 1.52999 * 117.49926 * 0.02562 * 19 16 2 21 21 C 1.52998 * 117.50065 * 145.02305 * 19 16 2 22 22 H 1.08994 * 109.47438 * 302.00415 * 1 2 3 23 23 H 1.09000 * 109.46926 * 62.00312 * 1 2 3 24 24 H 1.09003 * 109.47150 * 181.99758 * 1 2 3 25 25 H 1.00898 * 111.00291 * 151.04603 * 4 2 1 26 26 H 1.09004 * 109.46969 * 59.99509 * 5 4 2 27 27 H 1.09007 * 109.46718 * 299.99785 * 5 4 2 28 28 H 1.08994 * 109.47449 * 59.99855 * 6 5 4 29 29 H 1.08997 * 109.47025 * 299.99424 * 6 5 4 30 30 H 1.09007 * 109.46803 * 299.99658 * 7 6 5 31 31 H 1.09004 * 109.47092 * 59.99508 * 7 6 5 32 32 H 0.96998 * 120.00124 * 179.97438 * 11 10 8 33 33 H 1.08997 * 117.50275 * 214.98648 * 18 16 2 34 34 H 1.09004 * 117.49784 * 359.97438 * 18 16 2 35 35 H 1.09002 * 109.47660 * 58.53004 * 20 19 16 36 36 H 1.09005 * 109.47456 * 178.53371 * 20 19 16 37 37 H 1.09004 * 109.47063 * 298.53340 * 20 19 16 38 38 H 1.08993 * 109.47399 * 59.99656 * 21 19 16 39 39 H 1.08998 * 109.47259 * 180.02562 * 21 19 16 40 40 H 1.09004 * 109.47272 * 299.99941 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0823 0.2225 2.3469 6 6 2.5961 -0.5330 3.5741 7 6 2.6608 0.4198 4.7695 8 6 3.1663 -0.3245 5.9785 9 1 3.4168 -1.3722 5.9018 10 6 3.3100 0.3325 7.1821 11 7 3.0064 1.6087 7.2751 12 14 3.9359 -0.5903 8.6808 13 1 4.2034 -2.0045 8.3153 14 1 5.1896 0.0424 9.1638 15 1 2.9116 -0.5425 9.7550 16 6 2.0401 -0.7212 -1.2493 17 1 2.0514 -1.8096 -1.1920 18 6 1.7285 -0.0884 -2.6069 19 6 3.1538 -0.0443 -2.0505 20 6 3.6728 1.3017 -1.5409 21 6 4.1980 -0.9470 -2.7106 22 1 -0.3634 0.5446 0.8714 23 1 -0.3633 0.4824 -0.9074 24 1 -0.3633 -1.0271 0.0358 25 1 2.9172 -1.1205 1.0288 26 1 1.0869 0.6162 2.5525 27 1 2.7588 1.0461 2.1183 28 1 3.5915 -0.9264 3.3683 29 1 1.9200 -1.3568 3.8029 30 1 3.3367 1.2440 4.5409 31 1 1.6651 0.8128 4.9752 32 1 3.1072 2.0707 8.1220 33 1 1.5353 -0.7604 -3.4430 34 1 1.1598 0.8415 -2.6102 35 1 4.0514 1.1844 -0.5254 36 1 4.4759 1.6509 -2.1900 37 1 2.8608 2.0290 -1.5441 38 1 3.7054 -1.6189 -3.4132 39 1 4.9246 -0.3331 -3.2429 40 1 4.7084 -1.5320 -1.9454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379652991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -9.164878 kcal Electronic energy + Delta-G solvation = -15499.720946 eV Core-core repulsion = 13120.898893 eV Total energy + Delta-G solvation = -2378.822053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29610 -36.08165 -33.60837 -31.79169 -29.73777 -28.45329 -27.68020 -26.08481 -23.73374 -21.90206 -20.44194 -19.96079 -18.68476 -16.25947 -16.08141 -15.08692 -14.75850 -14.44730 -13.97809 -13.90488 -13.51242 -12.94965 -12.64436 -12.56035 -12.29373 -12.13485 -12.00429 -11.73974 -11.52455 -11.40736 -11.27624 -10.86932 -10.55861 -10.48466 -10.43538 -10.07910 -9.65623 -9.54532 -9.27452 -8.99449 -8.31339 -8.07134 -5.96312 -3.98136 3.33605 3.40846 3.45641 3.55296 4.28119 4.49786 4.58924 4.61354 4.92162 4.93439 5.25538 5.35380 5.39585 5.48768 5.55116 5.59456 5.63801 5.74725 5.78421 5.80159 5.82781 5.88695 5.99055 6.01934 6.10657 6.13754 6.22229 6.35831 6.45951 6.78023 6.85876 7.19150 7.46097 7.72315 7.74757 7.88551 8.04597 8.48205 9.09413 9.65771 11.15242 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043929 B = 0.004320 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.244415 B = 6479.338500 C = 6669.371801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.109 3.891 3 H 0.046 0.954 4 N -0.685 5.685 5 C 0.060 3.940 6 C -0.106 4.106 7 C 0.021 3.979 8 C -0.517 4.517 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.143 4.143 17 H 0.108 0.892 18 C -0.167 4.167 19 C -0.132 4.132 20 C -0.116 4.116 21 C -0.114 4.114 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.338 0.662 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.013 0.987 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -2.445 -19.782 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.000 4.000 3 H 0.064 0.936 4 N -0.316 5.316 5 C -0.068 4.068 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.161 4.161 17 H 0.126 0.874 18 C -0.205 4.205 19 C -0.132 4.132 20 C -0.173 4.173 21 C -0.171 4.171 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.679 -2.545 -19.483 19.720 hybrid contribution 1.065 0.144 0.679 1.271 sum -0.613 -2.401 -18.805 18.967 Atomic orbital electron populations 1.21740 0.94704 1.02247 1.00742 1.21095 0.95579 0.95485 0.87876 0.93646 1.60621 1.33124 1.33825 1.03994 1.22150 1.00313 0.93673 0.90705 1.21614 0.99235 0.99441 0.94160 1.19076 0.97076 0.94240 0.91232 1.21306 1.43254 0.96434 0.94550 0.92624 1.25030 0.95682 0.94876 0.98960 1.69977 1.49115 1.09012 1.25563 0.86547 0.78474 0.80074 0.82985 1.19719 1.21067 1.21027 1.22630 1.02090 0.99477 0.91933 0.87352 1.23209 0.97834 1.02711 0.96704 1.21655 0.90210 0.97889 1.03401 1.21364 1.00768 0.94131 1.01065 1.21346 0.97542 0.98406 0.99822 0.92694 0.93103 0.92109 0.84462 0.91592 0.95979 0.93727 0.92601 0.96855 0.96608 0.93128 0.88988 0.88926 0.92108 0.92239 0.92444 0.92616 0.92293 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.31 37.15 0.35 -1.35 16 2 C 0.11 1.41 2.61 -67.71 -0.18 1.23 16 3 H 0.05 0.61 5.73 -51.93 -0.30 0.32 16 4 N -0.68 -10.41 6.31 -106.73 -0.67 -11.08 16 5 C 0.06 1.08 5.48 -3.83 -0.02 1.06 16 6 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 9 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 C -0.14 -1.56 4.77 -90.63 -0.43 -2.00 16 17 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.17 -1.58 9.07 -26.70 -0.24 -1.82 16 19 C -0.13 -1.31 2.70 -154.48 -0.42 -1.73 16 20 C -0.12 -1.19 8.37 37.16 0.31 -0.88 16 21 C -0.11 -1.00 9.85 37.16 0.37 -0.63 16 22 H 0.05 0.73 7.50 -51.93 -0.39 0.34 16 23 H 0.05 0.54 7.55 -51.93 -0.39 0.15 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.34 4.92 8.36 -39.29 -0.33 4.59 16 26 H 0.07 1.22 7.47 -51.93 -0.39 0.83 16 27 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 33 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.09 0.86 7.80 -51.93 -0.41 0.45 16 35 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 36 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 37 H 0.06 0.58 7.41 -51.93 -0.38 0.19 16 38 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 39 H 0.06 0.47 7.91 -51.93 -0.41 0.06 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -29.97 320.27 -8.66 -38.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.57 Total: -0.74 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.96 Total: -21.92 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.06 Total: -37.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.97 -8.66 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379652991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.463 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds