Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47454 * 2 1 4 4 N 1.46899 * 109.47107 * 120.00077 * 2 1 3 5 5 C 1.46898 * 111.00419 * 275.00325 * 4 2 1 6 6 C 1.52994 * 109.47344 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47137 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47227 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99730 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99651 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00468 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99514 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47259 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47173 * 120.00031 * 12 10 8 15 15 H 1.48498 * 109.47193 * 239.99735 * 12 10 8 16 16 C 1.53004 * 109.47535 * 240.00309 * 2 1 3 17 17 H 1.09001 * 115.54519 * 279.02324 * 16 2 1 18 18 C 1.52994 * 117.49880 * 64.68752 * 16 2 1 19 19 C 1.52991 * 117.50174 * 133.35039 * 16 2 1 20 20 C 1.52999 * 117.49926 * 0.02562 * 19 16 2 21 21 C 1.52998 * 117.50065 * 145.02305 * 19 16 2 22 22 H 1.08994 * 109.47438 * 302.00415 * 1 2 3 23 23 H 1.09000 * 109.46926 * 62.00312 * 1 2 3 24 24 H 1.09003 * 109.47150 * 181.99758 * 1 2 3 25 25 H 1.00898 * 111.00291 * 151.04603 * 4 2 1 26 26 H 1.09004 * 109.46969 * 59.99509 * 5 4 2 27 27 H 1.09007 * 109.46718 * 299.99785 * 5 4 2 28 28 H 1.08994 * 109.47449 * 59.99855 * 6 5 4 29 29 H 1.08997 * 109.47025 * 299.99424 * 6 5 4 30 30 H 1.09007 * 109.46803 * 299.99658 * 7 6 5 31 31 H 1.09004 * 109.47092 * 59.99508 * 7 6 5 32 32 H 0.96998 * 120.00124 * 179.97438 * 11 10 8 33 33 H 1.08997 * 117.50275 * 214.98648 * 18 16 2 34 34 H 1.09004 * 117.49784 * 359.97438 * 18 16 2 35 35 H 1.09002 * 109.47660 * 58.53004 * 20 19 16 36 36 H 1.09005 * 109.47456 * 178.53371 * 20 19 16 37 37 H 1.09004 * 109.47063 * 298.53340 * 20 19 16 38 38 H 1.08993 * 109.47399 * 59.99656 * 21 19 16 39 39 H 1.08998 * 109.47259 * 180.02562 * 21 19 16 40 40 H 1.09004 * 109.47272 * 299.99941 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0823 0.2225 2.3469 6 6 2.5961 -0.5330 3.5741 7 6 2.6608 0.4198 4.7695 8 6 3.1663 -0.3245 5.9785 9 1 3.4168 -1.3722 5.9018 10 6 3.3100 0.3325 7.1821 11 7 3.0064 1.6087 7.2751 12 14 3.9359 -0.5903 8.6808 13 1 4.2034 -2.0045 8.3153 14 1 5.1896 0.0424 9.1638 15 1 2.9116 -0.5425 9.7550 16 6 2.0401 -0.7212 -1.2493 17 1 2.0514 -1.8096 -1.1920 18 6 1.7285 -0.0884 -2.6069 19 6 3.1538 -0.0443 -2.0505 20 6 3.6728 1.3017 -1.5409 21 6 4.1980 -0.9470 -2.7106 22 1 -0.3634 0.5446 0.8714 23 1 -0.3633 0.4824 -0.9074 24 1 -0.3633 -1.0271 0.0358 25 1 2.9172 -1.1205 1.0288 26 1 1.0869 0.6162 2.5525 27 1 2.7588 1.0461 2.1183 28 1 3.5915 -0.9264 3.3683 29 1 1.9200 -1.3568 3.8029 30 1 3.3367 1.2440 4.5409 31 1 1.6651 0.8128 4.9752 32 1 3.1072 2.0707 8.1220 33 1 1.5353 -0.7604 -3.4430 34 1 1.1598 0.8415 -2.6102 35 1 4.0514 1.1844 -0.5254 36 1 4.4759 1.6509 -2.1900 37 1 2.8608 2.0290 -1.5441 38 1 3.7054 -1.6189 -3.4132 39 1 4.9246 -0.3331 -3.2429 40 1 4.7084 -1.5320 -1.9454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379652991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -26.274430 kcal Electronic energy + Delta-G solvation = -15500.462871 eV Core-core repulsion = 13120.898893 eV Total energy + Delta-G solvation = -2379.563978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18779 -37.43415 -35.50214 -33.53697 -31.08740 -29.42489 -28.41965 -27.86025 -25.18460 -23.38899 -22.01112 -21.07498 -19.58779 -18.47280 -17.21906 -16.55671 -16.12308 -15.98819 -15.09682 -14.94914 -14.71493 -14.35636 -13.96635 -13.63017 -13.46883 -13.40486 -13.26742 -12.96879 -12.81434 -12.66126 -12.58315 -12.42226 -12.18058 -12.13355 -11.67536 -11.45841 -11.35871 -11.14322 -10.78690 -10.56502 -10.36571 -9.33917 -8.20629 -6.31859 1.39888 1.40396 1.54160 2.40902 2.74198 3.12471 3.19162 3.70366 3.82486 4.04347 4.17803 4.22822 4.30069 4.37672 4.41027 4.66159 4.70061 4.73304 4.79119 4.83595 4.92256 4.95885 5.03658 5.03800 5.05869 5.09881 5.15139 5.22843 5.26304 5.32986 5.41040 5.45805 5.52154 5.73944 5.84974 6.13344 6.27764 6.52368 6.85075 7.37557 8.91657 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043929 B = 0.004320 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.244415 B = 6479.338500 C = 6669.371801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.110 3.890 3 H 0.040 0.960 4 N -0.684 5.684 5 C 0.075 3.925 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.543 4.543 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.152 4.152 17 H 0.107 0.893 18 C -0.153 4.153 19 C -0.133 4.133 20 C -0.117 4.117 21 C -0.113 4.113 22 H 0.039 0.961 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.342 0.658 26 H 0.058 0.942 27 H 0.019 0.981 28 H 0.050 0.950 29 H 0.052 0.948 30 H -0.010 1.010 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -3.507 -20.787 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.000 4.000 3 H 0.058 0.942 4 N -0.315 5.315 5 C -0.054 4.054 6 C -0.129 4.129 7 C -0.013 4.013 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.171 4.171 17 H 0.125 0.875 18 C -0.190 4.190 19 C -0.133 4.133 20 C -0.174 4.174 21 C -0.170 4.170 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.161 0.839 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.334 -3.615 -20.510 20.869 hybrid contribution 0.941 0.515 0.956 1.437 sum -0.393 -3.101 -19.554 19.802 Atomic orbital electron populations 1.21732 0.94307 1.02068 1.01105 1.21128 0.95841 0.95242 0.87747 0.94208 1.60564 1.33462 1.33289 1.04222 1.21832 0.99505 0.93490 0.90612 1.21366 0.99677 0.98267 0.93629 1.18979 0.94793 0.94438 0.93065 1.21725 1.43692 0.96875 0.95775 0.92247 1.26003 0.95641 0.95780 1.02473 1.70105 1.49923 1.10739 1.26714 0.85372 0.78005 0.78992 0.78516 1.18594 1.20230 1.20288 1.22488 1.03622 0.99211 0.91758 0.87467 1.23285 0.97100 1.02791 0.95871 1.21743 0.90806 0.97663 1.03122 1.21366 1.01142 0.94534 1.00355 1.21358 0.97404 0.98410 0.99852 0.94188 0.91056 0.92361 0.83934 0.92311 0.96316 0.93161 0.92940 0.99149 0.99110 0.92749 0.87417 0.88591 0.93833 0.91032 0.92552 0.91606 0.91489 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.31 71.98 0.67 -2.53 16 2 C 0.11 2.73 2.61 44.92 0.12 2.85 16 3 H 0.04 1.05 5.73 -2.39 -0.01 1.04 16 4 N -0.68 -20.45 6.31 -491.58 -3.10 -23.56 16 5 C 0.07 2.72 5.48 86.30 0.47 3.19 16 6 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 7 C 0.02 1.36 4.97 29.85 0.15 1.51 16 8 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 9 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 10 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 11 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 12 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 13 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C -0.15 -3.08 4.77 -10.80 -0.05 -3.13 16 17 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.15 -2.50 9.07 30.62 0.28 -2.22 16 19 C -0.13 -2.41 2.70 -52.16 -0.14 -2.55 16 20 C -0.12 -2.26 8.37 71.98 0.60 -1.65 16 21 C -0.11 -1.73 9.85 71.98 0.71 -1.03 16 22 H 0.04 1.05 7.50 -2.39 -0.02 1.04 16 23 H 0.07 1.39 7.55 -2.39 -0.02 1.37 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.34 9.71 8.36 -89.70 -0.75 8.96 16 26 H 0.06 2.22 7.47 -2.38 -0.02 2.20 16 27 H 0.02 0.69 8.06 -2.38 -0.02 0.67 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 31 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.11 1.45 8.05 -2.39 -0.02 1.43 16 34 H 0.10 1.52 7.80 -2.38 -0.02 1.50 16 35 H 0.04 0.98 8.02 -2.39 -0.02 0.96 16 36 H 0.07 1.18 7.90 -2.38 -0.02 1.16 16 37 H 0.06 1.08 7.41 -2.39 -0.02 1.06 16 38 H 0.06 0.87 7.90 -2.39 -0.02 0.85 16 39 H 0.07 0.91 7.91 -2.39 -0.02 0.90 16 40 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -63.86 320.27 3.10 -60.76 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.22 Total: 14.03 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.67 Total: -40.62 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.82 Total: -81.29 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -63.86 3.10 -60.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379652991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.483 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds