Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47321 * 2 1 4 4 N 1.46897 * 109.46734 * 239.99922 * 2 1 3 5 5 C 1.46902 * 111.00030 * 85.00674 * 4 2 1 6 6 C 1.53003 * 109.47441 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47029 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46934 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99568 * 359.97438 * 8 7 6 10 10 C 1.37867 * 120.00214 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99840 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00377 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47313 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.46836 * 300.00204 * 12 10 8 15 15 H 1.48501 * 109.46799 * 59.99956 * 12 10 8 16 16 C 1.52999 * 109.47164 * 120.00422 * 2 1 3 17 17 H 1.09001 * 115.55170 * 81.25245 * 16 2 1 18 18 C 1.53004 * 117.49882 * 295.58926 * 16 2 1 19 19 C 1.52998 * 117.50039 * 226.93326 * 16 2 1 20 20 C 1.53000 * 117.49885 * 214.97828 * 19 16 2 21 21 C 1.53001 * 117.49813 * 359.97438 * 19 16 2 22 22 H 1.09000 * 109.46967 * 297.66034 * 1 2 3 23 23 H 1.09004 * 109.47151 * 57.65942 * 1 2 3 24 24 H 1.08998 * 109.47962 * 177.66178 * 1 2 3 25 25 H 1.00906 * 111.00200 * 208.95135 * 4 2 1 26 26 H 1.08995 * 109.47388 * 59.99089 * 5 4 2 27 27 H 1.08999 * 109.46598 * 299.99550 * 5 4 2 28 28 H 1.08996 * 109.47069 * 59.99746 * 6 5 4 29 29 H 1.09001 * 109.46467 * 299.99758 * 6 5 4 30 30 H 1.08996 * 109.47182 * 60.00086 * 7 6 5 31 31 H 1.08999 * 109.47025 * 299.99535 * 7 6 5 32 32 H 0.97006 * 120.00155 * 180.02562 * 11 10 8 33 33 H 1.09005 * 117.49545 * 359.97438 * 18 16 2 34 34 H 1.08997 * 117.50298 * 145.02015 * 18 16 2 35 35 H 1.09004 * 109.46870 * 59.99449 * 20 19 16 36 36 H 1.08995 * 109.47391 * 179.97438 * 20 19 16 37 37 H 1.08996 * 109.47287 * 299.99826 * 20 19 16 38 38 H 1.09002 * 109.46834 * 61.49229 * 21 19 16 39 39 H 1.08996 * 109.47263 * 181.48893 * 21 19 16 40 40 H 1.09004 * 109.47309 * 301.49960 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5949 -0.5332 -3.5746 7 6 2.6598 0.4199 -4.7698 8 6 3.1651 -0.3244 -5.9788 9 1 3.4154 -1.3722 -5.9022 10 6 3.3080 0.3323 -7.1826 11 7 3.0036 1.6084 -7.2757 12 14 3.9337 -0.5904 -8.6815 13 1 3.9968 0.3346 -9.8415 14 1 5.2901 -1.1265 -8.4021 15 1 3.0122 -1.7127 -8.9922 16 6 2.0400 -0.7213 1.2492 17 1 2.0557 -1.8096 1.1902 18 6 1.7228 -0.0921 2.6073 19 6 3.1491 -0.0414 2.0543 20 6 4.1954 -0.9410 2.7152 21 6 3.6639 1.3077 1.5482 22 1 -0.3633 0.4771 0.9102 23 1 -0.3634 0.5498 -0.8683 24 1 -0.3635 -1.0267 -0.0419 25 1 2.9172 -1.1206 -1.0288 26 1 2.7588 1.0462 -2.1182 27 1 1.0870 0.6163 -2.5525 28 1 1.9181 -1.3564 -3.8031 29 1 3.5902 -0.9273 -3.3691 30 1 3.3363 1.2434 -4.5415 31 1 1.6643 0.8136 -4.9749 32 1 3.1038 2.0704 -8.1227 33 1 1.1511 0.8360 2.6107 34 1 1.5303 -0.7663 3.4418 35 1 4.7098 -1.5227 1.9502 36 1 4.9182 -0.3253 3.2503 37 1 3.7038 -1.6162 3.4155 38 1 2.8491 2.0317 1.5512 39 1 4.4642 1.6587 2.1995 40 1 4.0448 1.1937 0.5333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379652993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = -9.043143 kcal Electronic energy + Delta-G solvation = -15498.582291 eV Core-core repulsion = 13119.765518 eV Total energy + Delta-G solvation = -2378.816774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.29603 -36.08117 -33.60644 -31.78930 -29.73645 -28.45240 -27.67984 -26.08302 -23.73353 -21.90101 -20.43975 -19.95860 -18.68439 -16.25289 -16.08138 -15.08629 -14.75913 -14.45216 -13.97890 -13.90428 -13.51096 -12.95050 -12.64362 -12.55764 -12.29083 -12.12855 -12.00287 -11.73822 -11.52429 -11.41048 -11.27804 -10.83380 -10.56701 -10.48879 -10.45878 -10.08098 -9.65056 -9.54470 -9.27013 -9.01474 -8.30431 -8.07185 -5.95769 -3.97800 3.36411 3.40271 3.43218 3.55299 4.28133 4.49935 4.59023 4.61322 4.92129 4.93428 5.25529 5.35441 5.39883 5.48753 5.55138 5.59509 5.63755 5.74711 5.78411 5.80182 5.82755 5.88754 5.99101 6.01941 6.10685 6.13770 6.22244 6.35926 6.45988 6.78118 6.85940 7.19222 7.46107 7.72055 7.74688 7.88801 8.04898 8.48381 9.09247 9.65958 11.15690 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043980 B = 0.004317 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.505709 B = 6483.814421 C = 6672.642100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.109 3.891 3 H 0.046 0.954 4 N -0.685 5.685 5 C 0.060 3.940 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.288 1.288 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.143 4.143 17 H 0.108 0.892 18 C -0.167 4.167 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.116 4.116 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.338 0.662 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -2.416 19.763 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.000 4.000 3 H 0.064 0.936 4 N -0.316 5.316 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.213 1.213 14 H -0.203 1.203 15 H -0.202 1.202 16 C -0.161 4.161 17 H 0.126 0.874 18 C -0.205 4.205 19 C -0.132 4.132 20 C -0.171 4.171 21 C -0.173 4.173 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.684 -2.506 19.460 19.692 hybrid contribution 1.070 0.117 -0.669 1.268 sum -0.614 -2.389 18.790 18.952 Atomic orbital electron populations 1.21743 0.94704 1.02261 1.00732 1.21093 0.95581 0.95488 0.87877 0.93639 1.60630 1.33118 1.33815 1.03997 1.22151 1.00321 0.93674 0.90705 1.21617 0.99236 0.99441 0.94156 1.19061 0.97057 0.94227 0.91202 1.21229 1.43503 0.96382 0.94584 0.92739 1.25025 0.95658 0.94879 0.98929 1.69962 1.48960 1.09012 1.25748 0.86659 0.79425 0.79618 0.82305 1.21321 1.20281 1.20218 1.22633 1.02124 0.99476 0.91897 0.87350 1.23212 0.97787 1.02727 0.96729 1.21658 0.90246 0.97858 1.03405 1.21346 0.97527 0.98426 0.99816 1.21363 1.00788 0.94099 1.01078 0.93097 0.92704 0.92102 0.84466 0.95968 0.91598 0.92603 0.93731 0.96867 0.96614 0.93015 0.88924 0.88984 0.92119 0.92293 0.92616 0.92443 0.92239 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.31 37.16 0.35 -1.35 16 2 C 0.11 1.41 2.61 -67.72 -0.18 1.23 16 3 H 0.05 0.62 5.72 -51.93 -0.30 0.32 16 4 N -0.68 -10.42 6.31 -106.73 -0.67 -11.09 16 5 C 0.06 1.08 5.48 -3.82 -0.02 1.06 16 6 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 7 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 9 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 12 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C -0.14 -1.56 4.78 -90.62 -0.43 -2.00 16 17 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.17 -1.58 9.06 -26.69 -0.24 -1.82 16 19 C -0.13 -1.31 2.70 -154.47 -0.42 -1.73 16 20 C -0.11 -1.00 9.85 37.16 0.37 -0.63 16 21 C -0.12 -1.19 8.37 37.16 0.31 -0.88 16 22 H 0.05 0.54 7.52 -51.93 -0.39 0.15 16 23 H 0.05 0.73 7.51 -51.93 -0.39 0.34 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.34 4.92 8.36 -39.29 -0.33 4.59 16 26 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 27 H 0.07 1.22 7.48 -51.93 -0.39 0.83 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.09 0.86 7.78 -51.93 -0.40 0.45 16 34 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.47 7.91 -51.93 -0.41 0.06 16 37 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 38 H 0.06 0.58 7.41 -51.93 -0.38 0.19 16 39 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 40 H 0.06 0.70 8.01 -51.93 -0.42 0.28 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -29.92 320.22 -8.66 -38.58 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.57 Total: -0.67 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -0.96 Total: -21.93 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.06 Total: -37.82 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.92 -8.66 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379652993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.541 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds