Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47321 * 2 1 4 4 N 1.46897 * 109.46734 * 239.99922 * 2 1 3 5 5 C 1.46902 * 111.00030 * 85.00674 * 4 2 1 6 6 C 1.53003 * 109.47441 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47029 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46934 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99568 * 359.97438 * 8 7 6 10 10 C 1.37867 * 120.00214 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99840 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00377 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47313 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.46836 * 300.00204 * 12 10 8 15 15 H 1.48501 * 109.46799 * 59.99956 * 12 10 8 16 16 C 1.52999 * 109.47164 * 120.00422 * 2 1 3 17 17 H 1.09001 * 115.55170 * 81.25245 * 16 2 1 18 18 C 1.53004 * 117.49882 * 295.58926 * 16 2 1 19 19 C 1.52998 * 117.50039 * 226.93326 * 16 2 1 20 20 C 1.53000 * 117.49885 * 214.97828 * 19 16 2 21 21 C 1.53001 * 117.49813 * 359.97438 * 19 16 2 22 22 H 1.09000 * 109.46967 * 297.66034 * 1 2 3 23 23 H 1.09004 * 109.47151 * 57.65942 * 1 2 3 24 24 H 1.08998 * 109.47962 * 177.66178 * 1 2 3 25 25 H 1.00906 * 111.00200 * 208.95135 * 4 2 1 26 26 H 1.08995 * 109.47388 * 59.99089 * 5 4 2 27 27 H 1.08999 * 109.46598 * 299.99550 * 5 4 2 28 28 H 1.08996 * 109.47069 * 59.99746 * 6 5 4 29 29 H 1.09001 * 109.46467 * 299.99758 * 6 5 4 30 30 H 1.08996 * 109.47182 * 60.00086 * 7 6 5 31 31 H 1.08999 * 109.47025 * 299.99535 * 7 6 5 32 32 H 0.97006 * 120.00155 * 180.02562 * 11 10 8 33 33 H 1.09005 * 117.49545 * 359.97438 * 18 16 2 34 34 H 1.08997 * 117.50298 * 145.02015 * 18 16 2 35 35 H 1.09004 * 109.46870 * 59.99449 * 20 19 16 36 36 H 1.08995 * 109.47391 * 179.97438 * 20 19 16 37 37 H 1.08996 * 109.47287 * 299.99826 * 20 19 16 38 38 H 1.09002 * 109.46834 * 61.49229 * 21 19 16 39 39 H 1.08996 * 109.47263 * 181.48893 * 21 19 16 40 40 H 1.09004 * 109.47309 * 301.49960 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5949 -0.5332 -3.5746 7 6 2.6598 0.4199 -4.7698 8 6 3.1651 -0.3244 -5.9788 9 1 3.4154 -1.3722 -5.9022 10 6 3.3080 0.3323 -7.1826 11 7 3.0036 1.6084 -7.2757 12 14 3.9337 -0.5904 -8.6815 13 1 3.9968 0.3346 -9.8415 14 1 5.2901 -1.1265 -8.4021 15 1 3.0122 -1.7127 -8.9922 16 6 2.0400 -0.7213 1.2492 17 1 2.0557 -1.8096 1.1902 18 6 1.7228 -0.0921 2.6073 19 6 3.1491 -0.0414 2.0543 20 6 4.1954 -0.9410 2.7152 21 6 3.6639 1.3077 1.5482 22 1 -0.3633 0.4771 0.9102 23 1 -0.3634 0.5498 -0.8683 24 1 -0.3635 -1.0267 -0.0419 25 1 2.9172 -1.1206 -1.0288 26 1 2.7588 1.0462 -2.1182 27 1 1.0870 0.6163 -2.5525 28 1 1.9181 -1.3564 -3.8031 29 1 3.5902 -0.9273 -3.3691 30 1 3.3363 1.2434 -4.5415 31 1 1.6643 0.8136 -4.9749 32 1 3.1038 2.0704 -8.1227 33 1 1.1511 0.8360 2.6107 34 1 1.5303 -0.7663 3.4418 35 1 4.7098 -1.5227 1.9502 36 1 4.9182 -0.3253 3.2503 37 1 3.7038 -1.6162 3.4155 38 1 2.8491 2.0317 1.5512 39 1 4.4642 1.6587 2.1995 40 1 4.0448 1.1937 0.5333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379652993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = -26.119743 kcal Electronic energy + Delta-G solvation = -15499.322788 eV Core-core repulsion = 13119.765518 eV Total energy + Delta-G solvation = -2379.557271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18803 -37.43407 -35.50026 -33.53521 -31.08641 -29.42408 -28.41948 -27.85803 -25.18419 -23.38933 -22.01086 -21.07248 -19.58783 -18.46397 -17.21951 -16.55976 -16.12508 -15.98914 -15.09572 -14.94983 -14.71212 -14.34066 -13.96918 -13.63401 -13.46766 -13.40672 -13.26641 -12.97064 -12.78536 -12.66648 -12.57036 -12.42198 -12.21573 -12.13298 -11.67106 -11.45371 -11.36403 -11.15864 -10.78703 -10.55203 -10.36603 -9.34045 -8.20104 -6.31574 1.39953 1.43522 1.51476 2.41169 2.74199 3.12805 3.19086 3.70409 3.82463 4.04281 4.17787 4.22758 4.30153 4.37630 4.40959 4.66141 4.70068 4.73283 4.79118 4.83554 4.92195 4.95906 5.03639 5.03779 5.05856 5.09850 5.15107 5.22871 5.26293 5.32993 5.41004 5.45764 5.51844 5.74055 5.84994 6.13321 6.27806 6.52264 6.84933 7.37731 8.91749 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043980 B = 0.004317 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.505709 B = 6483.814421 C = 6672.642100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.110 3.890 3 H 0.040 0.960 4 N -0.684 5.684 5 C 0.075 3.925 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.545 4.545 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.282 1.282 14 H -0.266 1.266 15 H -0.267 1.267 16 C -0.152 4.152 17 H 0.107 0.893 18 C -0.153 4.153 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.117 4.117 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.342 0.658 26 H 0.019 0.981 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.050 0.950 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -3.506 20.775 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.000 4.000 3 H 0.058 0.942 4 N -0.315 5.315 5 C -0.054 4.054 6 C -0.129 4.129 7 C -0.012 4.012 8 C -0.583 4.583 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.207 1.207 14 H -0.191 1.191 15 H -0.192 1.192 16 C -0.171 4.171 17 H 0.125 0.875 18 C -0.190 4.190 19 C -0.133 4.133 20 C -0.170 4.170 21 C -0.174 4.174 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.161 0.839 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.332 -3.607 20.495 20.852 hybrid contribution 0.943 0.496 -0.947 1.425 sum -0.389 -3.111 19.548 19.798 Atomic orbital electron populations 1.21734 0.94308 1.02063 1.01111 1.21127 0.95842 0.95246 0.87748 0.94201 1.60573 1.33459 1.33278 1.04224 1.21832 0.99509 0.93493 0.90615 1.21369 0.99681 0.98265 0.93621 1.18966 0.94768 0.94430 0.93052 1.21669 1.43915 0.96895 0.95796 0.92233 1.26003 0.95611 0.95780 1.02459 1.70098 1.49801 1.10749 1.26811 0.85480 0.79222 0.78345 0.77883 1.20707 1.19097 1.19160 1.22490 1.03664 0.99209 0.91721 0.87464 1.23288 0.97059 1.02807 0.95887 1.21747 0.90851 0.97629 1.03119 1.21358 0.97382 0.98438 0.99844 1.21366 1.01157 0.94504 1.00370 0.91045 0.94194 0.92365 0.83934 0.96307 0.92324 0.92934 0.93159 0.99172 0.99128 0.92743 0.88588 0.87414 0.92605 0.91488 0.91607 0.92548 0.91030 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.31 71.98 0.67 -2.53 16 2 C 0.11 2.73 2.61 44.91 0.12 2.85 16 3 H 0.04 1.06 5.72 -2.39 -0.01 1.04 16 4 N -0.68 -20.46 6.31 -491.60 -3.10 -23.57 16 5 C 0.07 2.72 5.48 86.30 0.47 3.19 16 6 C -0.09 -3.96 5.41 30.60 0.17 -3.79 16 7 C 0.03 1.40 4.97 29.85 0.15 1.55 16 8 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 10 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 11 N -0.93 -58.06 13.29 21.44 0.28 -57.78 16 12 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 C -0.15 -3.08 4.78 -10.79 -0.05 -3.13 16 17 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.15 -2.50 9.06 30.62 0.28 -2.22 16 19 C -0.13 -2.41 2.70 -52.16 -0.14 -2.55 16 20 C -0.11 -1.73 9.85 71.98 0.71 -1.02 16 21 C -0.12 -2.26 8.37 71.98 0.60 -1.65 16 22 H 0.07 1.39 7.52 -2.39 -0.02 1.37 16 23 H 0.04 1.05 7.51 -2.38 -0.02 1.04 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.34 9.71 8.36 -89.69 -0.75 8.96 16 26 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 27 H 0.06 2.21 7.48 -2.39 -0.02 2.20 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 33 H 0.10 1.52 7.78 -2.38 -0.02 1.50 16 34 H 0.11 1.45 8.05 -2.39 -0.02 1.43 16 35 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.07 0.91 7.91 -2.39 -0.02 0.90 16 37 H 0.06 0.87 7.90 -2.39 -0.02 0.85 16 38 H 0.06 1.08 7.41 -2.39 -0.02 1.06 16 39 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16 40 H 0.04 0.98 8.01 -2.38 -0.02 0.96 16 Total: -1.00 -63.81 320.22 3.10 -60.71 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.22 Total: 14.26 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.67 Total: -40.69 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.82 Total: -81.35 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.81 3.10 -60.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379652993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.586 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds