Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46910 * 109.47127 * 65.00091 * 4 2 1 6 6 C 1.46897 * 111.00178 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47289 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47032 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46715 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47005 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99943 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00170 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00197 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47343 * 89.99234 * 14 12 10 16 16 H 1.48503 * 109.47455 * 209.99415 * 14 12 10 17 17 H 1.48501 * 109.46733 * 329.99520 * 14 12 10 18 18 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 19 19 C 1.53003 * 117.50265 * 248.62743 * 18 2 1 20 20 C 1.52998 * 117.50427 * 179.97438 * 18 2 1 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 25 25 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 26 26 H 1.00899 * 110.99514 * 303.95543 * 5 4 2 27 27 H 1.09005 * 109.47233 * 300.00192 * 6 5 4 28 28 H 1.09006 * 109.47211 * 59.99522 * 6 5 4 29 29 H 1.09003 * 109.46384 * 299.99971 * 7 6 5 30 30 H 1.08997 * 109.46870 * 59.99611 * 7 6 5 31 31 H 1.08992 * 109.47555 * 299.99851 * 8 7 6 32 32 H 1.09007 * 109.47489 * 60.00076 * 8 7 6 33 33 H 1.09000 * 109.47288 * 299.99650 * 9 8 7 34 34 H 1.08996 * 109.47380 * 60.00511 * 9 8 7 35 35 H 0.96999 * 119.99832 * 180.02562 * 13 12 10 36 36 H 1.09005 * 115.54744 * 34.32833 * 18 2 1 37 37 H 1.08999 * 117.49725 * 359.97438 * 19 18 2 38 38 H 1.08994 * 117.50100 * 145.02000 * 19 18 2 39 39 H 1.08999 * 117.50259 * 214.97964 * 20 18 2 40 40 H 1.09005 * 117.49497 * 0.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6271 -3.6672 7 6 1.7026 0.1909 -4.8892 8 6 2.1963 -0.5009 -6.1614 9 6 1.7734 0.3169 -7.3834 10 6 2.2602 -0.3642 -8.6365 11 1 2.8152 -1.2882 -8.5682 12 6 1.9961 0.1916 -9.8703 13 7 2.4204 -0.4031 -10.9639 14 14 1.0355 1.7893 -9.9887 15 1 1.9769 2.9370 -9.9496 16 1 0.2748 1.8163 -11.2638 17 1 0.0910 1.8847 -8.8467 18 6 2.0400 -0.7212 1.2493 19 6 2.7418 0.1228 2.3152 20 6 3.5550 -0.8285 1.4341 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 3.1263 -0.7994 -1.2055 25 1 1.6054 -1.7198 -1.2951 26 1 0.6529 0.1793 -2.4753 27 1 3.2118 -0.7051 -3.6405 28 1 1.6905 -1.6250 -3.7296 29 1 0.6157 0.2692 -4.9160 30 1 2.1373 1.1885 -4.8265 31 1 3.2830 -0.5789 -6.1343 32 1 1.7619 -1.4987 -6.2244 33 1 0.6865 0.3944 -7.4104 34 1 2.2075 1.3147 -7.3208 35 1 2.2349 -0.0118 -11.8319 36 1 1.4310 -1.5584 1.5903 37 1 2.8406 1.1917 2.1263 38 1 2.5946 -0.1591 3.3577 39 1 3.9425 -1.7359 1.8973 40 1 4.1884 -0.3850 0.6658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385287244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -11.495936 kcal Electronic energy + Delta-G solvation = -14969.555282 eV Core-core repulsion = 12590.632147 eV Total energy + Delta-G solvation = -2378.923135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.73122 -36.53868 -34.46919 -32.67909 -31.45400 -28.66438 -26.07057 -24.18663 -22.75124 -22.16312 -21.27545 -20.07581 -19.76590 -16.64795 -16.31663 -15.71553 -15.29134 -14.70468 -14.19965 -14.00777 -13.70609 -13.45788 -12.76178 -12.57933 -12.46642 -11.97040 -11.83843 -11.72144 -11.44776 -11.33135 -11.15457 -10.91233 -10.73428 -10.50598 -10.42804 -10.15601 -9.84117 -9.64443 -9.42819 -9.11383 -8.49554 -8.39045 -6.00270 -3.97758 3.34289 3.41122 3.45857 3.50032 4.12758 4.48034 4.49404 4.63123 4.70776 4.83501 5.02130 5.14779 5.33417 5.34254 5.36684 5.39585 5.45735 5.56437 5.60785 5.65475 5.80947 5.82234 5.85733 5.86987 6.00073 6.09092 6.17642 6.20481 6.41832 6.70503 6.80353 6.94181 7.13416 7.38035 7.41210 7.51356 7.85158 8.59232 9.05092 9.62824 11.13394 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.060518 B = 0.003515 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.561616 B = 7963.925389 C = 8191.252734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 H 0.079 0.921 4 C 0.064 3.936 5 N -0.693 5.693 6 C 0.059 3.941 7 C -0.118 4.118 8 C -0.101 4.101 9 C -0.014 4.014 10 C -0.520 4.520 11 H 0.070 0.930 12 C 0.064 3.936 13 N -0.906 5.906 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.147 4.147 19 C -0.180 4.180 20 C -0.181 4.181 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.027 0.973 26 H 0.338 0.662 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 0.493 25.169 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 H 0.098 0.902 4 C -0.065 4.065 5 N -0.325 5.325 6 C -0.070 4.070 7 C -0.156 4.156 8 C -0.139 4.139 9 C -0.052 4.052 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.137 4.137 13 N -0.546 5.546 14 Si 0.709 3.291 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.166 4.166 19 C -0.217 4.217 20 C -0.218 4.218 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.156 0.844 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.774 0.926 25.004 25.083 hybrid contribution -1.042 -0.011 -0.267 1.076 sum -2.816 0.915 24.737 24.913 Atomic orbital electron populations 1.21830 0.95009 1.01652 1.01967 1.20741 0.95664 0.99576 0.91976 0.90224 1.21971 1.00678 0.94506 0.89331 1.60565 1.19615 1.50494 1.01809 1.22049 1.00419 0.95386 0.89119 1.21671 1.00496 0.99723 0.93737 1.21415 1.00160 0.99014 0.93355 1.19572 0.96241 0.95541 0.93797 1.21200 1.35325 1.09869 0.89357 0.91139 1.25055 0.95500 0.97352 0.95775 1.69927 1.46960 1.39881 0.97794 0.86750 0.80722 0.84221 0.77425 1.20305 1.21476 1.19002 1.22335 0.94880 1.01804 0.97568 1.23008 1.04860 0.97698 0.96102 1.22965 0.94006 1.01657 1.03186 0.92911 0.92149 0.92516 0.91017 0.95452 0.84377 0.91203 0.95497 0.92810 0.91673 0.92837 0.93066 0.96779 0.97075 0.92818 0.88038 0.88767 0.89087 0.88986 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.95 37.16 0.33 -0.88 16 2 C -0.06 -0.55 2.75 -90.63 -0.25 -0.80 16 3 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 4 C 0.06 0.68 5.06 -3.82 -0.02 0.66 16 5 N -0.69 -8.54 6.50 -113.77 -0.74 -9.28 16 6 C 0.06 0.83 5.68 -3.82 -0.02 0.81 16 7 C -0.12 -1.95 5.47 -26.73 -0.15 -2.09 16 8 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 14 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 18 C -0.15 -1.18 5.15 -90.62 -0.47 -1.65 16 19 C -0.18 -1.33 10.18 -26.70 -0.27 -1.60 16 20 C -0.18 -1.42 9.67 -26.70 -0.26 -1.68 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.78 7.12 -51.93 -0.37 0.41 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.34 3.88 6.98 -39.29 -0.27 3.61 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 37 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.80 7.58 -51.93 -0.39 0.41 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -30.64 318.97 -9.25 -39.89 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.64 Total: -1.56 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -1.78 Total: -23.65 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.03 Total: -37.07 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.64 -9.25 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385287244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.392 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds