Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46910 * 109.47127 * 65.00091 * 4 2 1 6 6 C 1.46897 * 111.00178 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47289 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47032 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46715 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47005 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99943 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00170 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00197 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47343 * 89.99234 * 14 12 10 16 16 H 1.48503 * 109.47455 * 209.99415 * 14 12 10 17 17 H 1.48501 * 109.46733 * 329.99520 * 14 12 10 18 18 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 19 19 C 1.53003 * 117.50265 * 248.62743 * 18 2 1 20 20 C 1.52998 * 117.50427 * 179.97438 * 18 2 1 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 25 25 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 26 26 H 1.00899 * 110.99514 * 303.95543 * 5 4 2 27 27 H 1.09005 * 109.47233 * 300.00192 * 6 5 4 28 28 H 1.09006 * 109.47211 * 59.99522 * 6 5 4 29 29 H 1.09003 * 109.46384 * 299.99971 * 7 6 5 30 30 H 1.08997 * 109.46870 * 59.99611 * 7 6 5 31 31 H 1.08992 * 109.47555 * 299.99851 * 8 7 6 32 32 H 1.09007 * 109.47489 * 60.00076 * 8 7 6 33 33 H 1.09000 * 109.47288 * 299.99650 * 9 8 7 34 34 H 1.08996 * 109.47380 * 60.00511 * 9 8 7 35 35 H 0.96999 * 119.99832 * 180.02562 * 13 12 10 36 36 H 1.09005 * 115.54744 * 34.32833 * 18 2 1 37 37 H 1.08999 * 117.49725 * 359.97438 * 19 18 2 38 38 H 1.08994 * 117.50100 * 145.02000 * 19 18 2 39 39 H 1.08999 * 117.50259 * 214.97964 * 20 18 2 40 40 H 1.09005 * 117.49497 * 0.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6271 -3.6672 7 6 1.7026 0.1909 -4.8892 8 6 2.1963 -0.5009 -6.1614 9 6 1.7734 0.3169 -7.3834 10 6 2.2602 -0.3642 -8.6365 11 1 2.8152 -1.2882 -8.5682 12 6 1.9961 0.1916 -9.8703 13 7 2.4204 -0.4031 -10.9639 14 14 1.0355 1.7893 -9.9887 15 1 1.9769 2.9370 -9.9496 16 1 0.2748 1.8163 -11.2638 17 1 0.0910 1.8847 -8.8467 18 6 2.0400 -0.7212 1.2493 19 6 2.7418 0.1228 2.3152 20 6 3.5550 -0.8285 1.4341 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 3.1263 -0.7994 -1.2055 25 1 1.6054 -1.7198 -1.2951 26 1 0.6529 0.1793 -2.4753 27 1 3.2118 -0.7051 -3.6405 28 1 1.6905 -1.6250 -3.7296 29 1 0.6157 0.2692 -4.9160 30 1 2.1373 1.1885 -4.8265 31 1 3.2830 -0.5789 -6.1343 32 1 1.7619 -1.4987 -6.2244 33 1 0.6865 0.3944 -7.4104 34 1 2.2075 1.3147 -7.3208 35 1 2.2349 -0.0118 -11.8319 36 1 1.4310 -1.5584 1.5903 37 1 2.8406 1.1917 2.1263 38 1 2.5946 -0.1591 3.3577 39 1 3.9425 -1.7359 1.8973 40 1 4.1884 -0.3850 0.6658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385287244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -29.450524 kcal Electronic energy + Delta-G solvation = -14970.333851 eV Core-core repulsion = 12590.632147 eV Total energy + Delta-G solvation = -2379.701704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45080 -37.63288 -35.97008 -34.39916 -32.78330 -30.20641 -27.19872 -25.58528 -23.47797 -23.02755 -22.54604 -21.74246 -20.56546 -18.85739 -17.29392 -16.51613 -16.32935 -16.11396 -15.84688 -15.02633 -14.85247 -14.59419 -14.35938 -13.79057 -13.62387 -13.38333 -13.16851 -12.87981 -12.47331 -12.37929 -12.16454 -12.08317 -12.03909 -11.76228 -11.66985 -11.39956 -11.30504 -11.22694 -11.01417 -10.76382 -10.72724 -9.36872 -8.29797 -6.34077 1.36311 1.38076 1.50775 2.36758 2.86193 3.05528 3.24145 3.79728 3.98447 4.01116 4.10251 4.17346 4.23339 4.37443 4.46137 4.50971 4.60120 4.70889 4.75606 4.78854 4.81755 4.87776 4.93329 5.02861 5.12283 5.14933 5.19926 5.21643 5.25950 5.28915 5.34352 5.52195 5.57652 5.65048 5.68559 6.08654 6.29195 6.48677 6.74277 7.30836 8.87275 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.060518 B = 0.003515 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.561616 B = 7963.925389 C = 8191.252734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 H 0.070 0.930 4 C 0.066 3.934 5 N -0.696 5.696 6 C 0.067 3.933 7 C -0.106 4.106 8 C -0.095 4.095 9 C -0.012 4.012 10 C -0.536 4.536 11 H 0.029 0.971 12 C 0.000 4.000 13 N -0.954 5.954 14 Si 0.955 3.045 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.245 1.245 18 C -0.151 4.151 19 C -0.175 4.175 20 C -0.187 4.187 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.344 0.656 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 1.804 27.011 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 H 0.089 0.911 4 C -0.063 4.063 5 N -0.328 5.328 6 C -0.062 4.062 7 C -0.144 4.144 8 C -0.134 4.134 9 C -0.050 4.050 10 C -0.574 4.574 11 H 0.047 0.953 12 C -0.196 4.196 13 N -0.595 5.595 14 Si 0.778 3.222 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.169 1.169 18 C -0.170 4.170 19 C -0.212 4.212 20 C -0.224 4.224 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.163 0.837 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.984 2.231 26.873 27.130 hybrid contribution -0.598 -0.508 -0.847 1.154 sum -3.582 1.723 26.026 26.328 Atomic orbital electron populations 1.21814 0.94270 1.01944 1.02228 1.20662 0.96226 0.98869 0.91621 0.91144 1.21986 1.00430 0.94580 0.89256 1.60521 1.20148 1.50572 1.01591 1.21860 1.00251 0.95096 0.89016 1.21493 1.00847 0.99428 0.92654 1.21294 0.99795 0.98558 0.93721 1.19544 0.96303 0.95874 0.93252 1.21580 1.35002 1.08926 0.91875 0.95256 1.26096 0.96693 1.01673 0.95178 1.70083 1.48654 1.42118 0.98626 0.85583 0.79484 0.78923 0.78202 1.19117 1.20885 1.16885 1.22330 0.95020 1.02186 0.97440 1.23069 1.04019 0.97559 0.96551 1.23001 0.93832 1.02200 1.03324 0.92590 0.92414 0.91744 0.91552 0.95340 0.83678 0.91553 0.95315 0.91934 0.91722 0.93528 0.93545 0.96213 0.96430 0.92491 0.87436 0.88867 0.87913 0.88208 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.95 71.98 0.64 -1.45 16 2 C -0.05 -0.90 2.75 -10.80 -0.03 -0.93 16 3 H 0.07 1.29 7.90 -2.39 -0.02 1.27 16 4 C 0.07 1.30 5.06 86.30 0.44 1.74 16 5 N -0.70 -15.86 6.50 -513.87 -3.34 -19.20 16 6 C 0.07 1.77 5.68 86.30 0.49 2.26 16 7 C -0.11 -3.30 5.47 30.59 0.17 -3.13 16 8 C -0.10 -3.80 5.15 30.59 0.16 -3.64 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.54 -32.02 9.66 25.60 0.25 -31.78 16 11 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 12 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 13 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 14 Si 0.96 45.28 27.47 68.60 1.88 47.16 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 18 C -0.15 -2.17 5.15 -10.79 -0.06 -2.22 16 19 C -0.18 -2.28 10.18 30.61 0.31 -1.97 16 20 C -0.19 -2.66 9.67 30.61 0.30 -2.37 16 21 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 0.86 6.68 -2.39 -0.02 0.84 16 23 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.07 1.37 7.12 -2.39 -0.02 1.35 16 25 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.34 7.15 6.98 -89.69 -0.63 6.52 16 27 H 0.07 1.80 8.14 -2.38 -0.02 1.79 16 28 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 34 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 35 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.11 1.43 8.11 -2.38 -0.02 1.41 16 37 H 0.09 1.23 8.05 -2.39 -0.02 1.21 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.40 7.58 -2.38 -0.02 1.38 16 Total: -1.00 -65.65 318.97 2.38 -63.28 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.29 Total: 13.29 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 3.25 Total: -43.49 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -3.04 Total: -80.24 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -65.65 2.38 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385287244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.825 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds