Wall clock time and date at job start Mon Mar 30 2020 02:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00263 * 2 1 3 5 5 N 1.46905 * 109.46932 * 295.00225 * 4 2 1 6 6 C 1.46901 * 110.99986 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47221 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47443 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47158 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00254 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99999 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00300 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99825 * 359.97438 * 12 10 9 15 15 H 1.48493 * 109.47140 * 90.00428 * 14 12 10 16 16 H 1.48503 * 109.46727 * 210.00143 * 14 12 10 17 17 H 1.48501 * 109.47033 * 330.00208 * 14 12 10 18 18 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 19 19 C 1.53000 * 117.49997 * 179.97438 * 18 2 1 20 20 C 1.53002 * 60.02940 * 252.49592 * 19 18 2 21 21 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 22 22 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47238 * 54.99814 * 4 2 1 25 25 H 1.08998 * 109.47246 * 175.00238 * 4 2 1 26 26 H 1.00899 * 110.99554 * 303.95161 * 5 4 2 27 27 H 1.09005 * 109.47132 * 299.99816 * 6 5 4 28 28 H 1.09002 * 109.47377 * 59.99667 * 6 5 4 29 29 H 1.08998 * 109.47445 * 299.99873 * 7 6 5 30 30 H 1.09001 * 109.47774 * 60.00163 * 7 6 5 31 31 H 1.09005 * 109.47110 * 300.00019 * 8 7 6 32 32 H 1.09002 * 109.47248 * 59.99778 * 8 7 6 33 33 H 1.09005 * 109.46754 * 299.99956 * 9 8 7 34 34 H 1.09002 * 109.47309 * 59.99534 * 9 8 7 35 35 H 0.96998 * 120.00204 * 180.02562 * 13 12 10 36 36 H 1.09008 * 115.56055 * 325.68508 * 18 2 1 37 37 H 1.09002 * 117.49833 * 359.97438 * 19 18 2 38 38 H 1.09002 * 117.49953 * 144.99738 * 19 18 2 39 39 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 40 40 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6513 0.0374 2.4456 6 6 2.1258 -0.6266 3.6671 7 6 1.7034 0.1914 4.8891 8 6 2.1970 -0.5004 6.1614 9 6 1.7741 0.3172 7.3834 10 6 2.2608 -0.3639 8.6365 11 1 2.8158 -1.2878 8.5681 12 6 1.9975 0.1924 9.8703 13 7 2.4226 -0.4017 10.9638 14 14 1.0380 1.7909 9.9885 15 1 -0.4127 1.4910 10.0908 16 1 1.4743 2.5421 11.1929 17 1 1.2899 2.6102 8.7758 18 6 2.0399 -0.7211 -1.2493 19 6 3.5550 -0.8274 -1.4346 20 6 2.7419 0.1229 -2.3160 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6054 -1.7198 1.2951 25 1 3.1263 -0.7994 1.2055 26 1 1.9881 0.9872 2.3966 27 1 1.6921 -1.6247 3.7300 28 1 3.2127 -0.7038 3.6400 29 1 2.1373 1.1893 4.8260 30 1 0.6165 0.2690 4.9165 31 1 1.7626 -1.4982 6.2243 32 1 3.2839 -0.5784 6.1343 33 1 2.2081 1.3152 7.3208 34 1 0.6871 0.3948 7.4103 35 1 2.2370 -0.0105 11.8318 36 1 1.4309 -1.5583 -1.5906 37 1 4.1883 -0.3832 -0.6668 38 1 3.9430 -1.7349 -1.8974 39 1 2.8404 1.1920 -2.1278 40 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385287246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:05 Heat of formation + Delta-G solvation = -11.792140 kcal Electronic energy + Delta-G solvation = -14965.874874 eV Core-core repulsion = 12586.938895 eV Total energy + Delta-G solvation = -2378.935979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.70702 -36.52269 -34.43222 -32.67409 -31.48442 -28.68578 -25.90993 -24.08122 -22.80005 -22.21170 -21.33237 -20.08784 -19.81767 -16.62372 -16.00116 -15.81083 -15.33149 -14.61281 -14.34537 -14.12352 -13.92585 -12.89056 -12.75654 -12.51609 -12.44699 -11.87287 -11.82553 -11.74792 -11.63679 -11.32419 -11.09647 -10.89495 -10.74098 -10.51427 -10.41421 -10.16831 -9.84260 -9.64487 -9.42918 -9.11513 -8.49710 -8.37315 -6.00379 -3.97861 3.34198 3.41028 3.45745 3.48324 4.12968 4.45339 4.49289 4.60837 4.68244 4.91481 5.10061 5.18572 5.28654 5.33514 5.36158 5.39307 5.48351 5.59186 5.64492 5.72942 5.82283 5.85339 5.88774 5.91587 6.07054 6.11132 6.19696 6.27539 6.41447 6.70412 6.80301 6.93928 7.12933 7.37857 7.40558 7.51208 7.85076 8.59129 9.05011 9.62701 11.13289 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.060611 B = 0.003514 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.848041 B = 7965.542264 C = 8190.155613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 H 0.067 0.933 4 C 0.064 3.936 5 N -0.691 5.691 6 C 0.060 3.940 7 C -0.118 4.118 8 C -0.101 4.101 9 C -0.014 4.014 10 C -0.520 4.520 11 H 0.070 0.930 12 C 0.064 3.936 13 N -0.906 5.906 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.146 4.146 19 C -0.182 4.182 20 C -0.180 4.180 21 H 0.069 0.931 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.028 0.972 26 H 0.337 0.663 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 1.313 -25.158 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 H 0.086 0.914 4 C -0.065 4.065 5 N -0.321 5.321 6 C -0.069 4.069 7 C -0.156 4.156 8 C -0.140 4.140 9 C -0.051 4.051 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.137 4.137 13 N -0.546 5.546 14 Si 0.709 3.291 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.165 4.165 19 C -0.219 4.219 20 C -0.217 4.217 21 H 0.088 0.912 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.154 0.846 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.612 1.039 -24.925 24.999 hybrid contribution 0.550 0.932 0.168 1.095 sum -1.062 1.971 -24.757 24.858 Atomic orbital electron populations 1.21692 0.94024 1.01802 1.01780 1.20716 0.96789 0.98387 0.91863 0.91440 1.21981 0.97380 0.97933 0.89215 1.60510 1.64308 1.05674 1.01614 1.22042 0.97030 0.98627 0.89208 1.21668 1.01545 0.98609 0.93777 1.21418 0.99929 0.99225 0.93380 1.19570 0.96001 0.95761 0.93805 1.21200 1.35417 1.09791 0.89360 0.91144 1.25056 0.95532 0.97316 0.95772 1.69921 1.46942 1.39897 0.97791 0.86751 0.80498 0.84274 0.77603 1.20300 1.21477 1.19003 1.22388 0.94665 1.01868 0.97556 1.22946 0.94137 1.01717 1.03137 1.23008 1.04923 0.97579 0.96228 0.91183 0.93457 0.93013 0.91074 0.95397 0.84590 0.91196 0.95554 0.92810 0.91674 0.92851 0.93083 0.96795 0.97075 0.92813 0.87823 0.88855 0.88940 0.88898 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.06 37.16 0.34 -0.90 16 2 C -0.06 -0.53 2.68 -90.63 -0.24 -0.77 16 3 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 4 C 0.06 0.67 4.99 -3.82 -0.02 0.65 16 5 N -0.69 -8.28 5.96 -113.78 -0.68 -8.96 16 6 C 0.06 0.83 5.68 -3.83 -0.02 0.80 16 7 C -0.12 -1.93 5.47 -26.73 -0.15 -2.07 16 8 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.46 16 10 C -0.52 -15.25 9.66 -34.44 -0.33 -15.59 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 14 Si 0.88 22.24 27.47 -169.99 -4.67 17.58 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 18 C -0.15 -1.18 5.15 -90.59 -0.47 -1.64 16 19 C -0.18 -1.41 9.67 -26.73 -0.26 -1.67 16 20 C -0.18 -1.32 10.18 -26.69 -0.27 -1.59 16 21 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.29 7.13 -51.93 -0.37 -0.08 16 26 H 0.34 3.78 8.73 -39.29 -0.34 3.44 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.10 0.81 8.11 -51.92 -0.42 0.39 16 37 H 0.09 0.75 7.59 -51.93 -0.39 0.36 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.66 8.05 -51.93 -0.42 0.25 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -30.49 321.25 -9.27 -39.76 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -7.76 Total: -1.83 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -1.77 Total: -23.60 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.10 Total: -36.74 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.49 -9.27 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385287246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.965 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds