Wall clock time and date at job start Mon Mar 30 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00263 * 2 1 3 5 5 N 1.46905 * 109.46932 * 295.00225 * 4 2 1 6 6 C 1.46901 * 110.99986 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47221 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47443 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47158 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00254 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99999 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00300 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99825 * 359.97438 * 12 10 9 15 15 H 1.48493 * 109.47140 * 90.00428 * 14 12 10 16 16 H 1.48503 * 109.46727 * 210.00143 * 14 12 10 17 17 H 1.48501 * 109.47033 * 330.00208 * 14 12 10 18 18 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 19 19 C 1.53000 * 117.49997 * 179.97438 * 18 2 1 20 20 C 1.53002 * 60.02940 * 252.49592 * 19 18 2 21 21 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 22 22 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47238 * 54.99814 * 4 2 1 25 25 H 1.08998 * 109.47246 * 175.00238 * 4 2 1 26 26 H 1.00899 * 110.99554 * 303.95161 * 5 4 2 27 27 H 1.09005 * 109.47132 * 299.99816 * 6 5 4 28 28 H 1.09002 * 109.47377 * 59.99667 * 6 5 4 29 29 H 1.08998 * 109.47445 * 299.99873 * 7 6 5 30 30 H 1.09001 * 109.47774 * 60.00163 * 7 6 5 31 31 H 1.09005 * 109.47110 * 300.00019 * 8 7 6 32 32 H 1.09002 * 109.47248 * 59.99778 * 8 7 6 33 33 H 1.09005 * 109.46754 * 299.99956 * 9 8 7 34 34 H 1.09002 * 109.47309 * 59.99534 * 9 8 7 35 35 H 0.96998 * 120.00204 * 180.02562 * 13 12 10 36 36 H 1.09008 * 115.56055 * 325.68508 * 18 2 1 37 37 H 1.09002 * 117.49833 * 359.97438 * 19 18 2 38 38 H 1.09002 * 117.49953 * 144.99738 * 19 18 2 39 39 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 40 40 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6513 0.0374 2.4456 6 6 2.1258 -0.6266 3.6671 7 6 1.7034 0.1914 4.8891 8 6 2.1970 -0.5004 6.1614 9 6 1.7741 0.3172 7.3834 10 6 2.2608 -0.3639 8.6365 11 1 2.8158 -1.2878 8.5681 12 6 1.9975 0.1924 9.8703 13 7 2.4226 -0.4017 10.9638 14 14 1.0380 1.7909 9.9885 15 1 -0.4127 1.4910 10.0908 16 1 1.4743 2.5421 11.1929 17 1 1.2899 2.6102 8.7758 18 6 2.0399 -0.7211 -1.2493 19 6 3.5550 -0.8274 -1.4346 20 6 2.7419 0.1229 -2.3160 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6054 -1.7198 1.2951 25 1 3.1263 -0.7994 1.2055 26 1 1.9881 0.9872 2.3966 27 1 1.6921 -1.6247 3.7300 28 1 3.2127 -0.7038 3.6400 29 1 2.1373 1.1893 4.8260 30 1 0.6165 0.2690 4.9165 31 1 1.7626 -1.4982 6.2243 32 1 3.2839 -0.5784 6.1343 33 1 2.2081 1.3152 7.3208 34 1 0.6871 0.3948 7.4103 35 1 2.2370 -0.0105 11.8318 36 1 1.4309 -1.5583 -1.5906 37 1 4.1883 -0.3832 -0.6668 38 1 3.9430 -1.7349 -1.8974 39 1 2.8404 1.1920 -2.1278 40 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385287246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:04 Heat of formation + Delta-G solvation = -29.475864 kcal Electronic energy + Delta-G solvation = -14966.641698 eV Core-core repulsion = 12586.938895 eV Total energy + Delta-G solvation = -2379.702803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.41834 -37.62077 -35.93742 -34.37892 -32.81223 -30.24090 -27.11916 -25.43302 -23.51619 -23.02935 -22.61362 -21.73957 -20.64548 -18.85321 -16.97302 -16.62649 -16.31025 -16.10818 -15.78525 -15.21775 -14.97049 -14.63901 -14.20581 -13.68778 -13.45541 -13.33364 -13.04188 -12.93818 -12.55525 -12.41104 -12.24123 -12.04505 -12.00261 -11.75133 -11.68152 -11.37644 -11.31414 -11.22816 -11.01238 -10.76431 -10.72778 -9.33133 -8.29805 -6.34074 1.36299 1.38097 1.50772 2.36747 2.85598 3.05522 3.25086 3.76851 3.94933 4.06056 4.11850 4.16575 4.28335 4.40754 4.49483 4.52102 4.60995 4.62548 4.78305 4.80019 4.84384 4.91818 4.98141 5.03917 5.13718 5.19949 5.20759 5.24521 5.26937 5.27113 5.40998 5.55970 5.57898 5.65309 5.68689 6.09111 6.29253 6.49463 6.74318 7.30819 8.87276 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.060611 B = 0.003514 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.848041 B = 7965.542264 C = 8190.155613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 H 0.068 0.932 4 C 0.067 3.933 5 N -0.692 5.692 6 C 0.068 3.932 7 C -0.106 4.106 8 C -0.096 4.096 9 C -0.012 4.012 10 C -0.536 4.536 11 H 0.029 0.971 12 C 0.000 4.000 13 N -0.954 5.954 14 Si 0.955 3.045 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.245 1.245 18 C -0.152 4.152 19 C -0.186 4.186 20 C -0.175 4.175 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.343 0.657 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 2.876 -27.052 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 H 0.087 0.913 4 C -0.062 4.062 5 N -0.323 5.323 6 C -0.061 4.061 7 C -0.144 4.144 8 C -0.134 4.134 9 C -0.050 4.050 10 C -0.574 4.574 11 H 0.047 0.953 12 C -0.196 4.196 13 N -0.595 5.595 14 Si 0.778 3.222 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.169 1.169 18 C -0.171 4.171 19 C -0.223 4.223 20 C -0.212 4.212 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.161 0.839 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.422 2.597 -26.847 27.081 hybrid contribution 0.860 0.351 0.763 1.203 sum -1.562 2.948 -26.084 26.296 Atomic orbital electron populations 1.21652 0.94105 1.01617 1.01599 1.20645 0.96613 0.98331 0.91550 0.91317 1.21986 0.97435 0.97650 0.89138 1.60461 1.64342 1.06087 1.01398 1.21843 0.97032 0.98084 0.89136 1.21486 1.01348 0.98847 0.92677 1.21298 0.99638 0.98671 0.93779 1.19542 0.96131 0.96023 0.93263 1.21582 1.35078 1.08857 0.91886 0.95270 1.26098 0.96717 1.01647 0.95175 1.70078 1.48646 1.42131 0.98623 0.85584 0.79011 0.79158 0.78440 1.19094 1.20899 1.16891 1.22359 0.94933 1.02267 0.97517 1.22987 0.93815 1.02218 1.03301 1.23078 1.03948 0.97587 0.96566 0.92427 0.92531 0.93202 0.91665 0.95288 0.83879 0.91588 0.95430 0.91953 0.91701 0.93554 0.93599 0.96249 0.96416 0.92489 0.87553 0.89312 0.88306 0.88703 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.06 71.98 0.65 -1.55 16 2 C -0.05 -0.85 2.68 -10.80 -0.03 -0.88 16 3 H 0.07 1.10 7.90 -2.39 -0.02 1.08 16 4 C 0.07 1.28 4.99 86.30 0.43 1.72 16 5 N -0.69 -15.31 5.96 -513.88 -3.06 -18.37 16 6 C 0.07 1.78 5.68 86.30 0.49 2.27 16 7 C -0.11 -3.25 5.47 30.59 0.17 -3.08 16 8 C -0.10 -3.80 5.15 30.59 0.16 -3.64 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.46 16 10 C -0.54 -32.03 9.66 25.60 0.25 -31.78 16 11 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 12 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 13 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 14 Si 0.96 45.26 27.47 68.60 1.88 47.14 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 18 C -0.15 -2.17 5.15 -10.77 -0.06 -2.22 16 19 C -0.19 -2.55 9.67 30.60 0.30 -2.26 16 20 C -0.17 -2.19 10.18 30.62 0.31 -1.88 16 21 H 0.06 1.10 7.75 -2.38 -0.02 1.08 16 22 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 0.56 7.13 -2.39 -0.02 0.54 16 26 H 0.34 6.94 8.73 -89.69 -0.78 6.15 16 27 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 34 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 35 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.11 1.47 8.11 -2.38 -0.02 1.45 16 37 H 0.09 1.30 7.59 -2.39 -0.02 1.28 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.40 321.25 2.50 -62.90 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.13 Total: 12.66 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 3.25 Total: -43.30 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.76 Total: -79.41 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -65.40 2.50 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385287246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.423 kcal (2) G-P(sol) polarization free energy of solvation -65.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds