Wall clock time and date at job start Mon Mar 30 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47336 * 2 1 4 4 N 1.46904 * 109.47656 * 239.99950 * 2 1 3 5 5 C 1.46897 * 110.99983 * 84.99562 * 4 2 1 6 6 C 1.52999 * 109.47018 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46754 * 180.02562 * 6 5 4 8 8 C 1.53009 * 109.46823 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47002 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00013 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00048 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99984 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46825 * 90.00386 * 13 11 9 15 15 H 1.48490 * 109.47391 * 210.00193 * 13 11 9 16 16 H 1.48502 * 109.47123 * 330.00892 * 13 11 9 17 17 C 1.53001 * 109.47069 * 119.99958 * 2 1 3 18 18 C 1.53782 * 113.61321 * 282.76025 * 17 2 1 19 19 C 1.53955 * 87.01861 * 220.04821 * 18 17 2 20 20 C 1.53779 * 87.11218 * 25.36600 * 19 18 17 21 21 H 1.09005 * 109.46959 * 56.85560 * 1 2 3 22 22 H 1.09001 * 109.46795 * 176.85169 * 1 2 3 23 23 H 1.08998 * 109.46934 * 296.85446 * 1 2 3 24 24 H 1.00896 * 111.00569 * 208.95735 * 4 2 1 25 25 H 1.09001 * 109.47063 * 60.00674 * 5 4 2 26 26 H 1.09004 * 109.47393 * 300.00497 * 5 4 2 27 27 H 1.08995 * 109.47212 * 300.00194 * 6 5 4 28 28 H 1.09001 * 109.47091 * 60.00155 * 6 5 4 29 29 H 1.09004 * 109.47210 * 299.99686 * 7 6 5 30 30 H 1.08993 * 109.47274 * 60.00142 * 7 6 5 31 31 H 1.08995 * 109.47235 * 299.99865 * 8 7 6 32 32 H 1.09001 * 109.46999 * 59.99783 * 8 7 6 33 33 H 0.96998 * 119.99836 * 179.97438 * 12 11 9 34 34 H 1.08993 * 112.85275 * 53.96071 * 17 2 1 35 35 H 1.09002 * 113.61401 * 334.56897 * 18 17 2 36 36 H 1.08999 * 113.61257 * 105.47403 * 18 17 2 37 37 H 1.09000 * 113.54160 * 270.80612 * 19 18 17 38 38 H 1.09005 * 113.74084 * 139.94455 * 19 18 17 39 39 H 1.09000 * 113.60979 * 220.08773 * 20 19 18 40 40 H 1.08995 * 113.61789 * 89.18998 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5952 -0.5332 -3.5744 7 6 2.6612 0.4200 -4.7693 8 6 3.1745 -0.3356 -5.9968 9 6 3.2388 0.6031 -7.1739 10 1 2.9436 1.6355 -7.0581 11 6 3.6747 0.1440 -8.3988 12 7 3.7313 0.9633 -9.4260 13 14 4.1860 -1.6415 -8.5990 14 1 3.0064 -2.4530 -8.9932 15 1 5.2299 -1.7426 -9.6501 16 1 4.7279 -2.1484 -7.3126 17 6 2.0400 -0.7212 1.2493 18 6 1.9519 0.1267 2.5292 19 6 3.3237 -0.4567 2.9138 20 6 3.5684 -0.6681 1.4104 21 1 -0.3633 0.5619 -0.8605 22 1 -0.3633 -1.0261 -0.0564 23 1 -0.3633 0.4642 0.9168 24 1 2.9174 -1.1205 -1.0287 25 1 2.7589 1.0462 -2.1182 26 1 1.0871 0.6162 -2.5526 27 1 3.5905 -0.9272 -3.3690 28 1 1.9186 -1.3567 -3.8029 29 1 1.6659 0.8143 -4.9749 30 1 3.3380 1.2431 -4.5406 31 1 4.1697 -0.7296 -5.7910 32 1 2.4980 -1.1590 -6.2257 33 1 4.0383 0.6404 -10.2876 34 1 1.6239 -1.7226 1.3594 35 1 1.9705 1.2006 2.3436 36 1 1.1454 -0.1745 3.1977 37 1 3.2585 -1.3855 3.4805 38 1 3.9977 0.2697 3.3680 39 1 4.0651 -1.6099 1.1772 40 1 4.0299 0.1881 0.9185 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385340903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:00 Heat of formation + Delta-G solvation = -32.719238 kcal Electronic energy + Delta-G solvation = -15264.767110 eV Core-core repulsion = 12884.923664 eV Total energy + Delta-G solvation = -2379.843446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.27752 -37.62710 -35.90149 -34.26739 -31.91406 -29.52488 -27.00096 -26.20370 -25.55781 -22.75127 -22.00124 -21.47328 -20.25259 -18.86341 -17.24077 -16.48548 -16.35971 -16.17329 -15.73551 -15.28078 -14.76936 -14.25810 -14.02569 -13.77419 -13.42570 -13.32273 -13.24521 -12.98452 -12.73637 -12.51808 -12.45901 -12.22392 -11.91225 -11.74713 -11.48057 -11.34731 -11.33478 -11.27600 -11.02737 -10.86129 -10.76712 -9.34481 -8.30157 -6.34436 1.35992 1.37798 1.50517 2.36471 3.05133 3.12373 3.70834 3.74448 3.90236 4.01434 4.10200 4.17809 4.34985 4.39493 4.49826 4.59751 4.65781 4.74001 4.84647 4.87026 4.88727 4.93543 4.98200 5.06789 5.09416 5.11288 5.16941 5.19814 5.25935 5.34967 5.41743 5.56998 5.62800 5.64531 5.68232 6.15852 6.28896 6.52693 6.73845 7.30441 8.86945 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.051576 B = 0.003921 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.763035 B = 7139.947146 C = 7337.395236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.036 0.964 4 N -0.690 5.690 5 C 0.069 3.931 6 C -0.106 4.106 7 C -0.095 4.095 8 C -0.012 4.012 9 C -0.536 4.536 10 H 0.029 0.971 11 C 0.000 4.000 12 N -0.954 5.954 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.246 1.246 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.146 4.146 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.344 0.656 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -5.394 25.872 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 H 0.054 0.946 4 N -0.322 5.322 5 C -0.061 4.061 6 C -0.144 4.144 7 C -0.133 4.133 8 C -0.049 4.049 9 C -0.574 4.574 10 H 0.047 0.953 11 C -0.196 4.196 12 N -0.595 5.595 13 Si 0.778 3.222 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.169 1.169 17 C -0.126 4.126 18 C -0.169 4.169 19 C -0.175 4.175 20 C -0.183 4.183 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.162 0.838 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.332 -5.622 25.537 26.360 hybrid contribution 0.962 0.373 -0.691 1.242 sum -2.370 -5.249 24.847 25.505 Atomic orbital electron populations 1.21747 0.94477 1.01993 1.01233 1.21571 0.96039 0.95249 0.88946 0.94627 1.60512 1.33692 1.33481 1.04477 1.21886 1.00164 0.93618 0.90399 1.21489 1.01156 0.98323 0.93398 1.21295 0.99920 0.97932 0.94199 1.19540 0.96290 0.95622 0.93493 1.21576 1.43567 0.97072 0.95200 0.95271 1.26096 0.95088 1.03089 0.95337 1.70081 1.49364 1.38004 1.02010 0.85585 0.78674 0.79088 0.78858 1.19092 1.20823 1.16944 1.22705 0.96101 1.00066 0.93776 1.22940 0.98046 0.99459 0.96444 1.22815 0.97234 1.01607 0.95802 1.22959 0.95887 1.01968 0.97497 0.93969 0.92438 0.91286 0.83757 0.95561 0.91656 0.92012 0.91736 0.93572 0.93606 0.96235 0.96433 0.92476 0.88704 0.90322 0.90598 0.89429 0.91176 0.91109 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.36 71.98 0.67 -1.92 16 2 C 0.09 1.78 2.35 44.91 0.11 1.88 16 3 H 0.04 0.74 7.71 -2.39 -0.02 0.73 16 4 N -0.69 -15.88 6.31 -491.57 -3.10 -18.98 16 5 C 0.07 1.84 5.48 86.30 0.47 2.31 16 6 C -0.11 -3.32 5.47 30.59 0.17 -3.15 16 7 C -0.10 -3.82 5.15 30.60 0.16 -3.66 16 8 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 9 C -0.54 -32.14 9.66 25.60 0.25 -31.90 16 10 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 11 C 0.00 0.01 5.47 84.66 0.46 0.48 16 12 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 13 Si 0.96 45.38 27.47 68.60 1.88 47.27 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 17 C -0.11 -1.68 3.20 -10.27 -0.03 -1.71 16 18 C -0.13 -1.71 7.44 31.18 0.23 -1.48 16 19 C -0.14 -1.70 8.09 31.18 0.25 -1.45 16 20 C -0.15 -2.16 6.75 31.12 0.21 -1.95 16 21 H 0.04 0.88 7.53 -2.38 -0.02 0.87 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.07 1.07 7.97 -2.39 -0.02 1.05 16 24 H 0.34 7.37 7.59 -89.70 -0.68 6.68 16 25 H 0.03 0.70 8.06 -2.39 -0.02 0.68 16 26 H 0.06 1.82 7.49 -2.38 -0.02 1.80 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 32 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 33 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.06 8.04 -2.39 -0.02 1.04 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -65.69 315.94 2.38 -63.31 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.23 Total: 12.52 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 3.07 Total: -43.01 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.80 Total: -80.09 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.27 kcal Total: -65.69 2.38 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385340903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.589 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds