Wall clock time and date at job start Mon Mar 30 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.53004 * 109.47154 * 119.99832 * 2 1 3 5 5 C 1.53003 * 109.47227 * 185.00284 * 4 2 1 6 6 C 1.53005 * 117.49670 * 243.62301 * 5 4 2 7 7 C 1.52992 * 117.49845 * 175.00350 * 5 4 2 8 8 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 9 9 C 1.46898 * 110.99673 * 84.99841 * 8 2 1 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 8 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99966 * 180.02562 * 13 12 11 16 16 N 1.31505 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47178 * 119.99393 * 17 15 13 20 20 H 1.48498 * 109.47163 * 239.99655 * 17 15 13 21 21 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 23 23 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 24 24 H 1.08997 * 109.47200 * 304.99808 * 4 2 1 25 25 H 1.08997 * 109.46987 * 64.99958 * 4 2 1 26 26 H 1.09002 * 115.54959 * 29.32502 * 5 4 2 27 27 H 1.08999 * 117.49889 * 359.97438 * 6 5 4 28 28 H 1.08997 * 117.50013 * 145.01820 * 6 5 4 29 29 H 1.09007 * 117.49477 * 214.97985 * 7 5 4 30 30 H 1.08998 * 117.50325 * 359.96532 * 7 5 4 31 31 H 1.00897 * 110.99542 * 321.04983 * 8 2 1 32 32 H 1.09001 * 109.47392 * 60.00807 * 9 8 2 33 33 H 1.09001 * 109.47520 * 300.00529 * 9 8 2 34 34 H 1.09001 * 109.47002 * 299.99782 * 10 9 8 35 35 H 1.08993 * 109.46955 * 60.00219 * 10 9 8 36 36 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 37 37 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 38 38 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 39 39 H 1.08992 * 109.47534 * 59.99520 * 12 11 10 40 40 H 0.97007 * 119.99787 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 6 4.3696 -1.9112 1.2206 7 6 4.2608 -1.1728 2.5561 8 7 2.0198 -0.6926 -1.1994 9 6 2.0825 0.2225 -2.3468 10 6 2.5952 -0.5333 -3.5744 11 6 2.6612 0.4199 -4.7694 12 6 3.1732 -0.3360 -5.9971 13 6 3.2388 0.6030 -7.1739 14 1 2.9443 1.6355 -7.0580 15 6 3.6738 0.1436 -8.3990 16 7 4.0319 -1.1139 -8.5404 17 14 3.7544 1.3073 -9.8580 18 1 3.3000 2.6579 -9.4396 19 1 5.1527 1.3860 -10.3517 20 1 2.8741 0.8033 -10.9425 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 3.9928 0.2786 0.8558 27 1 3.8126 -2.8421 1.1137 28 1 5.3271 -1.8735 0.7011 29 1 5.1468 -0.6492 2.9154 30 1 3.6323 -1.6173 3.3278 31 1 1.4496 -1.4979 -1.4099 32 1 2.7589 1.0461 -2.1182 33 1 1.0871 0.6163 -2.5525 34 1 3.5905 -0.9273 -3.3690 35 1 1.9185 -1.3566 -3.8029 36 1 1.6660 0.8143 -4.9750 37 1 3.3381 1.2431 -4.5406 38 1 4.1683 -0.7307 -5.7918 39 1 2.4961 -1.1589 -6.2256 40 1 4.3383 -1.4370 -9.4022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385343117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:26 Heat of formation + Delta-G solvation = -14.295737 kcal Electronic energy + Delta-G solvation = -15139.783814 eV Core-core repulsion = 12760.739270 eV Total energy + Delta-G solvation = -2379.044543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.37706 -36.54770 -34.53613 -32.58777 -30.62422 -27.57146 -27.42281 -24.21551 -22.34602 -21.46396 -21.19703 -20.44660 -19.81172 -16.22007 -15.78945 -15.57375 -15.13502 -14.47938 -14.43816 -14.06123 -13.57809 -12.85550 -12.67259 -12.47905 -12.24542 -12.06677 -11.59765 -11.53032 -11.27319 -11.22984 -11.00781 -10.89963 -10.52751 -10.43072 -10.38337 -10.16875 -9.84989 -9.58998 -9.21372 -8.95294 -8.30768 -8.23035 -5.95395 -3.97383 3.33393 3.40580 3.44985 3.83525 4.26407 4.50142 4.51851 4.87492 4.98574 5.06550 5.09030 5.30922 5.39962 5.41878 5.50456 5.56326 5.59742 5.61599 5.76950 5.83716 5.87157 5.94913 5.97251 6.09222 6.13338 6.22811 6.32374 6.35250 6.57044 6.88178 7.02151 7.13764 7.30646 7.53075 7.74543 7.90651 8.06189 8.49184 9.10458 9.66344 11.16003 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.041617 B = 0.003894 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.639307 B = 7188.541730 C = 7577.585648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.075 0.925 4 C -0.076 4.076 5 C -0.128 4.128 6 C -0.167 4.167 7 C -0.197 4.197 8 N -0.680 5.680 9 C 0.060 3.940 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.338 0.662 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 0.454 20.386 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.094 0.906 4 C -0.114 4.114 5 C -0.146 4.146 6 C -0.204 4.204 7 C -0.234 4.234 8 N -0.310 5.310 9 C -0.068 4.068 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.685 0.420 20.421 20.755 hybrid contribution -0.865 0.644 -1.153 1.579 sum -4.550 1.063 19.268 19.827 Atomic orbital electron populations 1.22518 0.97615 1.02033 1.02107 1.21574 0.92004 0.98067 0.90986 0.90635 1.21184 0.93164 1.00642 0.96440 1.22071 0.94098 0.98080 1.00337 1.22881 1.02061 0.96183 0.99314 1.23008 1.03069 1.05542 0.91797 1.60609 1.56969 1.09726 1.03736 1.22080 0.98922 0.95483 0.90365 1.21624 1.01330 0.98670 0.93646 1.21586 1.00030 0.97853 0.95224 1.19096 0.96257 0.95369 0.90939 1.21337 1.43309 0.96434 0.94653 0.92743 1.25039 0.95557 0.95086 0.98906 1.69980 1.44934 1.14366 1.24282 0.86559 0.77624 0.81205 0.82749 1.19775 1.21020 1.21063 0.92518 0.92320 0.92541 0.91827 0.91909 0.88166 0.89147 0.89166 0.89362 0.89393 0.84441 0.91513 0.95774 0.91715 0.92876 0.93773 0.93514 0.96617 0.96754 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 2 C 0.08 0.87 2.54 -67.71 -0.17 0.69 16 3 H 0.08 0.82 7.80 -51.93 -0.40 0.42 16 4 C -0.08 -0.72 5.17 -26.73 -0.14 -0.86 16 5 C -0.13 -1.31 5.48 -90.62 -0.50 -1.81 16 6 C -0.17 -1.74 10.18 -26.73 -0.27 -2.01 16 7 C -0.20 -1.81 10.25 -26.74 -0.27 -2.09 16 8 N -0.68 -8.39 5.97 -106.72 -0.64 -9.03 16 9 C 0.06 0.86 5.48 -3.82 -0.02 0.84 16 10 C -0.11 -2.00 5.47 -26.73 -0.15 -2.15 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 21 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 26 H 0.10 1.13 8.07 -51.93 -0.42 0.71 16 27 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 4.02 8.47 -39.29 -0.33 3.68 16 32 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 33 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -30.01 325.49 -9.67 -39.69 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.79 Total: -1.10 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -1.87 Total: -24.68 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.10 Total: -35.83 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.01 -9.67 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.389 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds