Wall clock time and date at job start Mon Mar 30 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.53004 * 109.47154 * 119.99832 * 2 1 3 5 5 C 1.53003 * 109.47227 * 185.00284 * 4 2 1 6 6 C 1.53005 * 117.49670 * 243.62301 * 5 4 2 7 7 C 1.52992 * 117.49845 * 175.00350 * 5 4 2 8 8 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 9 9 C 1.46898 * 110.99673 * 84.99841 * 8 2 1 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 8 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47188 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99966 * 180.02562 * 13 12 11 16 16 N 1.31505 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47178 * 119.99393 * 17 15 13 20 20 H 1.48498 * 109.47163 * 239.99655 * 17 15 13 21 21 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 23 23 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 24 24 H 1.08997 * 109.47200 * 304.99808 * 4 2 1 25 25 H 1.08997 * 109.46987 * 64.99958 * 4 2 1 26 26 H 1.09002 * 115.54959 * 29.32502 * 5 4 2 27 27 H 1.08999 * 117.49889 * 359.97438 * 6 5 4 28 28 H 1.08997 * 117.50013 * 145.01820 * 6 5 4 29 29 H 1.09007 * 117.49477 * 214.97985 * 7 5 4 30 30 H 1.08998 * 117.50325 * 359.96532 * 7 5 4 31 31 H 1.00897 * 110.99542 * 321.04983 * 8 2 1 32 32 H 1.09001 * 109.47392 * 60.00807 * 9 8 2 33 33 H 1.09001 * 109.47520 * 300.00529 * 9 8 2 34 34 H 1.09001 * 109.47002 * 299.99782 * 10 9 8 35 35 H 1.08993 * 109.46955 * 60.00219 * 10 9 8 36 36 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 37 37 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 38 38 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 39 39 H 1.08992 * 109.47534 * 59.99520 * 12 11 10 40 40 H 0.97007 * 119.99787 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3138 6 6 4.3696 -1.9112 1.2206 7 6 4.2608 -1.1728 2.5561 8 7 2.0198 -0.6926 -1.1994 9 6 2.0825 0.2225 -2.3468 10 6 2.5952 -0.5333 -3.5744 11 6 2.6612 0.4199 -4.7694 12 6 3.1732 -0.3360 -5.9971 13 6 3.2388 0.6030 -7.1739 14 1 2.9443 1.6355 -7.0580 15 6 3.6738 0.1436 -8.3990 16 7 4.0319 -1.1139 -8.5404 17 14 3.7544 1.3073 -9.8580 18 1 3.3000 2.6579 -9.4396 19 1 5.1527 1.3860 -10.3517 20 1 2.8741 0.8033 -10.9425 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 3.9928 0.2786 0.8558 27 1 3.8126 -2.8421 1.1137 28 1 5.3271 -1.8735 0.7011 29 1 5.1468 -0.6492 2.9154 30 1 3.6323 -1.6173 3.3278 31 1 1.4496 -1.4979 -1.4099 32 1 2.7589 1.0461 -2.1182 33 1 1.0871 0.6163 -2.5525 34 1 3.5905 -0.9273 -3.3690 35 1 1.9185 -1.3566 -3.8029 36 1 1.6660 0.8143 -4.9750 37 1 3.3381 1.2431 -4.5406 38 1 4.1683 -0.7307 -5.7918 39 1 2.4961 -1.1589 -6.2256 40 1 4.3383 -1.4370 -9.4022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385343117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:26 Heat of formation + Delta-G solvation = -30.877175 kcal Electronic energy + Delta-G solvation = -15140.502839 eV Core-core repulsion = 12760.739270 eV Total energy + Delta-G solvation = -2379.763568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.24620 -37.58533 -36.17031 -34.44106 -32.07032 -29.15945 -28.23354 -26.02595 -23.17861 -22.95981 -22.16587 -21.65027 -21.06689 -18.43655 -16.79545 -16.60875 -16.50678 -16.19122 -15.47049 -15.05133 -14.78317 -14.40516 -13.99909 -13.64200 -13.50089 -13.26582 -13.06844 -12.87405 -12.66615 -12.30145 -12.26839 -12.14159 -12.11071 -12.02041 -11.71126 -11.37476 -11.29641 -11.02801 -10.90968 -10.59190 -10.56345 -9.20968 -8.20236 -6.31800 1.39290 1.39889 1.53443 2.40712 3.05732 3.12403 3.28165 3.74225 4.09695 4.12908 4.18943 4.22540 4.32328 4.37508 4.52287 4.59360 4.64644 4.70477 4.80772 4.86614 4.88337 4.94559 5.04954 5.08167 5.13670 5.17295 5.27663 5.29347 5.34156 5.35944 5.38283 5.53708 5.55701 5.78059 5.86781 6.22066 6.26028 6.56891 6.85938 7.37555 8.91891 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.041617 B = 0.003894 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.639307 B = 7188.541730 C = 7577.585648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.071 0.929 4 C -0.070 4.070 5 C -0.136 4.136 6 C -0.181 4.181 7 C -0.183 4.183 8 N -0.685 5.685 9 C 0.074 3.926 10 C -0.104 4.104 11 C -0.097 4.097 12 C 0.022 3.978 13 C -0.545 4.545 14 H 0.059 0.941 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.341 0.659 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.049 0.951 38 H -0.012 1.012 39 H -0.010 1.010 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 1.542 21.266 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.108 4.108 5 C -0.154 4.154 6 C -0.218 4.218 7 C -0.220 4.220 8 N -0.316 5.316 9 C -0.055 4.055 10 C -0.142 4.142 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.159 0.841 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.496 1.511 21.323 21.844 hybrid contribution -0.590 0.261 -1.404 1.545 sum -5.086 1.772 19.919 20.634 Atomic orbital electron populations 1.22454 0.96446 1.02445 1.02398 1.21614 0.92897 0.97701 0.90298 0.91087 1.21150 0.92445 1.00696 0.96506 1.22092 0.94742 0.97352 1.01214 1.22897 1.01825 0.96436 1.00672 1.23066 1.03118 1.04431 0.91387 1.60563 1.57729 1.09681 1.03645 1.21821 0.98932 0.95148 0.89640 1.21447 1.00923 0.98076 0.93754 1.21398 0.99890 0.97922 0.94287 1.19027 0.94367 0.94936 0.93144 1.21776 1.43609 0.97035 0.95829 0.92228 1.26035 0.94857 0.96908 1.02304 1.70113 1.45562 1.16443 1.25367 0.85369 0.77931 0.79086 0.78474 1.18537 1.20280 1.20257 0.92051 0.90823 0.93444 0.90153 0.91833 0.89414 0.89094 0.90133 0.88828 0.88102 0.84075 0.91605 0.95155 0.92885 0.92969 0.93186 0.93241 0.99339 0.99205 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.16 71.98 0.66 -2.23 16 2 C 0.08 1.60 2.54 44.92 0.11 1.71 16 3 H 0.07 1.42 7.80 -2.39 -0.02 1.41 16 4 C -0.07 -1.18 5.17 30.60 0.16 -1.02 16 5 C -0.14 -2.63 5.48 -10.79 -0.06 -2.69 16 6 C -0.18 -3.65 10.18 30.59 0.31 -3.34 16 7 C -0.18 -3.06 10.25 30.59 0.31 -2.75 16 8 N -0.69 -16.12 5.97 -491.55 -2.94 -19.06 16 9 C 0.07 2.03 5.48 86.31 0.47 2.51 16 10 C -0.10 -3.62 5.47 30.60 0.17 -3.46 16 11 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16 12 C 0.02 1.23 4.97 29.85 0.15 1.38 16 13 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 16 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 17 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 0.86 7.45 -2.39 -0.02 0.84 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.08 7.88 -2.39 -0.02 1.06 16 26 H 0.09 1.92 8.07 -2.39 -0.02 1.90 16 27 H 0.09 1.80 8.03 -2.39 -0.02 1.78 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.34 7.69 8.47 -89.70 -0.76 6.93 16 32 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 33 H 0.03 0.81 7.44 -2.39 -0.02 0.79 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -64.24 325.49 2.72 -61.52 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.20 Total: 13.83 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 3.14 Total: -45.40 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.65 Total: -77.11 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.24 2.72 -61.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385343117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.645 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds