Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00216 * 2 1 4 4 C 1.52998 * 109.47272 * 66.04219 * 3 2 1 5 5 C 1.53001 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47346 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46878 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99497 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00276 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99736 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47335 * 59.99769 * 11 9 7 13 13 H 1.48500 * 109.47264 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47260 * 299.99535 * 11 9 7 15 15 C 1.46906 * 111.00212 * 236.04161 * 2 1 3 16 16 C 1.52999 * 109.46904 * 293.95822 * 15 2 1 17 17 C 1.53006 * 109.46626 * 179.97438 * 16 15 2 18 18 C 1.53003 * 117.49663 * 243.74292 * 17 16 15 19 19 C 1.53002 * 117.49643 * 175.08260 * 17 16 15 20 20 H 1.09005 * 109.47010 * 183.95794 * 1 2 3 21 21 H 1.08998 * 109.47527 * 303.95325 * 1 2 3 22 22 H 1.09001 * 109.47410 * 63.95283 * 1 2 3 23 23 H 1.09004 * 109.47337 * 186.04726 * 3 2 1 24 24 H 1.09001 * 109.46986 * 306.04584 * 3 2 1 25 25 H 1.08996 * 109.47594 * 300.00718 * 4 3 2 26 26 H 1.09001 * 109.46817 * 60.00261 * 4 3 2 27 27 H 1.08996 * 109.47398 * 300.00884 * 5 4 3 28 28 H 1.09011 * 109.46438 * 60.00093 * 5 4 3 29 29 H 1.08996 * 109.46930 * 300.00104 * 6 5 4 30 30 H 1.08995 * 109.46889 * 60.00759 * 6 5 4 31 31 H 0.97003 * 120.00005 * 180.02562 * 10 9 7 32 32 H 1.08993 * 109.47034 * 173.95131 * 15 2 1 33 33 H 1.09000 * 109.46693 * 53.95472 * 15 2 1 34 34 H 1.08993 * 109.47839 * 59.99803 * 16 15 2 35 35 H 1.09000 * 109.47160 * 299.99365 * 16 15 2 36 36 H 1.09002 * 115.55153 * 29.41498 * 17 16 15 37 37 H 1.08998 * 117.49856 * 0.02562 * 18 17 16 38 38 H 1.09000 * 117.49861 * 145.02337 * 18 17 16 39 39 H 1.08993 * 117.50251 * 214.97577 * 19 17 16 40 40 H 1.09003 * 117.49715 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8157 4.1719 2.6364 7 6 2.3559 5.5788 2.6363 8 1 2.9040 5.9468 1.7816 9 6 2.1503 6.3962 3.7275 10 7 1.4824 5.9482 4.7681 11 14 2.8204 8.1398 3.7277 12 1 2.2294 8.8974 2.5955 13 1 2.4665 8.8060 5.0069 14 1 4.2977 8.1024 3.5809 15 6 1.9954 -0.7661 -1.1376 16 6 1.6314 -2.2427 -0.9702 17 6 2.1792 -3.0404 -2.1553 18 6 1.1660 -3.7253 -3.0747 19 6 2.0190 -4.5616 -2.1175 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8524 22 1 -0.3634 0.4513 -0.9233 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9273 -0.8309 25 1 0.5471 2.0845 1.4265 26 1 2.0657 1.5016 2.1491 27 1 3.2645 3.4582 1.2104 28 1 1.7463 4.0417 0.4874 29 1 0.7314 4.1994 2.7439 30 1 2.2494 3.6160 3.4676 31 1 1.3375 6.5234 5.5356 32 1 3.0796 -0.6611 -1.1756 33 1 1.5611 -0.3874 -2.0628 34 1 0.5472 -2.3476 -0.9322 35 1 2.0657 -2.6214 -0.0450 36 1 3.0843 -2.6409 -2.6128 37 1 0.1091 -3.6072 -2.8355 38 1 1.4047 -3.7767 -4.1370 39 1 2.8184 -5.1628 -2.5505 40 1 1.5229 -4.9939 -1.2485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385851879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = -3.212668 kcal Electronic energy + Delta-G solvation = -14987.581124 eV Core-core repulsion = 12609.017178 eV Total energy + Delta-G solvation = -2378.563945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.49685 -37.13183 -34.39764 -32.36690 -30.49163 -28.29535 -26.46612 -24.41121 -22.66611 -22.11063 -20.55459 -20.50477 -19.93301 -16.19621 -15.96878 -15.64088 -15.52087 -14.53557 -14.44257 -14.02051 -13.99443 -13.37425 -12.48972 -12.21289 -12.18162 -11.83083 -11.75690 -11.61713 -11.50574 -11.28317 -11.07686 -10.91236 -10.55696 -10.44562 -10.37260 -10.27113 -10.07195 -9.55947 -9.21425 -8.97414 -8.29704 -8.22541 -5.94737 -3.96927 3.36118 3.40183 3.42824 3.53525 3.94089 4.49845 4.53910 4.66619 4.69629 4.98130 5.14868 5.29322 5.34630 5.36414 5.40575 5.46538 5.51628 5.62556 5.65830 5.67825 5.83370 5.84102 5.94534 5.99207 6.03897 6.17376 6.21032 6.30938 6.57965 6.86934 7.02385 7.13322 7.18567 7.30610 7.74406 7.91120 8.06687 8.49501 9.10479 9.66657 11.16631 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.086493 B = 0.003307 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.646324 B = 8464.508844 C = 8583.883370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.058 3.942 16 C -0.086 4.086 17 C -0.150 4.150 18 C -0.184 4.184 19 C -0.181 4.181 20 H 0.064 0.936 21 H 0.075 0.925 22 H 0.022 0.978 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -17.658 -13.531 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.071 4.071 16 C -0.124 4.124 17 C -0.169 4.169 18 C -0.221 4.221 19 C -0.218 4.218 20 H 0.083 0.917 21 H 0.093 0.907 22 H 0.040 0.960 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.533 -17.828 -12.922 22.025 hybrid contribution 0.050 1.384 -0.719 1.561 sum -0.483 -16.444 -13.641 21.371 Atomic orbital electron populations 1.22468 0.87803 1.01713 1.00863 1.62017 1.07843 1.14625 1.42318 1.22245 0.99684 0.86852 0.98337 1.21675 1.00814 0.96839 0.95845 1.21601 0.99339 0.92994 1.00816 1.19080 0.96666 0.94602 0.91191 1.21264 1.34793 0.98063 1.01758 0.92839 1.25032 0.95383 0.98458 0.95660 1.69958 1.41025 1.36511 1.06111 0.86671 0.79437 0.84804 0.77153 1.20301 1.21307 1.20259 1.22093 1.00094 0.93250 0.91619 1.21189 1.00537 0.93819 0.96810 1.22323 1.00758 0.94059 0.99758 1.23049 0.97118 1.05109 0.96786 1.22965 1.03081 0.93670 1.02129 0.91741 0.90671 0.95982 0.91115 0.95239 0.92568 0.91708 0.93486 0.93752 0.96768 0.96607 0.93004 0.90916 0.95116 0.91821 0.90677 0.87860 0.88900 0.89080 0.88963 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.06 0.55 0.79 16 2 N -0.54 -7.34 4.76 -242.92 -1.16 -8.49 16 3 C 0.06 0.84 4.96 -3.83 -0.02 0.82 16 4 C -0.11 -2.03 5.15 -26.73 -0.14 -2.17 16 5 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 11 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.06 0.64 4.92 -3.82 -0.02 0.62 16 16 C -0.09 -0.83 5.42 -26.73 -0.14 -0.98 16 17 C -0.15 -1.28 5.73 -90.61 -0.52 -1.80 16 18 C -0.18 -1.41 10.18 -26.69 -0.27 -1.69 16 19 C -0.18 -1.38 10.26 -26.69 -0.27 -1.66 16 20 H 0.06 0.69 6.47 -51.93 -0.34 0.36 16 21 H 0.07 0.99 6.30 -51.93 -0.33 0.67 16 22 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 24 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 25 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 0.80 7.93 -51.93 -0.41 0.38 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.06 0.61 6.28 -51.93 -0.33 0.29 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -30.37 320.54 -9.73 -40.10 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -7.60 Total: -4.63 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -1.52 Total: -22.01 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.42 Total: -35.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.37 -9.73 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385851879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.888 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds