Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46897 * 111.00216 * 2 1 4 4 C 1.52998 * 109.47272 * 66.04219 * 3 2 1 5 5 C 1.53001 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47346 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46878 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99497 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00276 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99736 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47335 * 59.99769 * 11 9 7 13 13 H 1.48500 * 109.47264 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47260 * 299.99535 * 11 9 7 15 15 C 1.46906 * 111.00212 * 236.04161 * 2 1 3 16 16 C 1.52999 * 109.46904 * 293.95822 * 15 2 1 17 17 C 1.53006 * 109.46626 * 179.97438 * 16 15 2 18 18 C 1.53003 * 117.49663 * 243.74292 * 17 16 15 19 19 C 1.53002 * 117.49643 * 175.08260 * 17 16 15 20 20 H 1.09005 * 109.47010 * 183.95794 * 1 2 3 21 21 H 1.08998 * 109.47527 * 303.95325 * 1 2 3 22 22 H 1.09001 * 109.47410 * 63.95283 * 1 2 3 23 23 H 1.09004 * 109.47337 * 186.04726 * 3 2 1 24 24 H 1.09001 * 109.46986 * 306.04584 * 3 2 1 25 25 H 1.08996 * 109.47594 * 300.00718 * 4 3 2 26 26 H 1.09001 * 109.46817 * 60.00261 * 4 3 2 27 27 H 1.08996 * 109.47398 * 300.00884 * 5 4 3 28 28 H 1.09011 * 109.46438 * 60.00093 * 5 4 3 29 29 H 1.08996 * 109.46930 * 300.00104 * 6 5 4 30 30 H 1.08995 * 109.46889 * 60.00759 * 6 5 4 31 31 H 0.97003 * 120.00005 * 180.02562 * 10 9 7 32 32 H 1.08993 * 109.47034 * 173.95131 * 15 2 1 33 33 H 1.09000 * 109.46693 * 53.95472 * 15 2 1 34 34 H 1.08993 * 109.47839 * 59.99803 * 16 15 2 35 35 H 1.09000 * 109.47160 * 299.99365 * 16 15 2 36 36 H 1.09002 * 115.55153 * 29.41498 * 17 16 15 37 37 H 1.08998 * 117.49856 * 0.02562 * 18 17 16 38 38 H 1.09000 * 117.49861 * 145.02337 * 18 17 16 39 39 H 1.08993 * 117.50251 * 214.97577 * 19 17 16 40 40 H 1.09003 * 117.49715 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1803 3.4856 1.3185 6 6 1.8157 4.1719 2.6364 7 6 2.3559 5.5788 2.6363 8 1 2.9040 5.9468 1.7816 9 6 2.1503 6.3962 3.7275 10 7 1.4824 5.9482 4.7681 11 14 2.8204 8.1398 3.7277 12 1 2.2294 8.8974 2.5955 13 1 2.4665 8.8060 5.0069 14 1 4.2977 8.1024 3.5809 15 6 1.9954 -0.7661 -1.1376 16 6 1.6314 -2.2427 -0.9702 17 6 2.1792 -3.0404 -2.1553 18 6 1.1660 -3.7253 -3.0747 19 6 2.0190 -4.5616 -2.1175 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8524 22 1 -0.3634 0.4513 -0.9233 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9273 -0.8309 25 1 0.5471 2.0845 1.4265 26 1 2.0657 1.5016 2.1491 27 1 3.2645 3.4582 1.2104 28 1 1.7463 4.0417 0.4874 29 1 0.7314 4.1994 2.7439 30 1 2.2494 3.6160 3.4676 31 1 1.3375 6.5234 5.5356 32 1 3.0796 -0.6611 -1.1756 33 1 1.5611 -0.3874 -2.0628 34 1 0.5472 -2.3476 -0.9322 35 1 2.0657 -2.6214 -0.0450 36 1 3.0843 -2.6409 -2.6128 37 1 0.1091 -3.6072 -2.8355 38 1 1.4047 -3.7767 -4.1370 39 1 2.8184 -5.1628 -2.5505 40 1 1.5229 -4.9939 -1.2485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385851879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -19.936195 kcal Electronic energy + Delta-G solvation = -14988.306310 eV Core-core repulsion = 12609.017178 eV Total energy + Delta-G solvation = -2379.289132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40167 -38.01096 -36.17897 -34.27346 -31.70487 -29.80647 -27.72504 -26.05063 -23.57184 -23.18012 -21.85313 -21.57682 -21.21030 -18.42162 -16.87642 -16.67245 -16.54642 -16.38920 -15.79759 -15.10906 -14.83191 -14.50599 -14.38336 -13.70522 -13.58054 -13.17970 -12.96610 -12.79368 -12.57710 -12.43468 -12.34872 -12.23119 -12.09215 -11.99698 -11.83573 -11.33829 -11.29066 -11.17243 -10.87514 -10.72812 -10.54839 -9.27025 -8.19551 -6.31326 1.39496 1.43166 1.51120 2.41142 2.86913 3.00298 3.12954 3.80572 4.02662 4.05074 4.07435 4.17585 4.20205 4.39719 4.52141 4.54502 4.57699 4.64976 4.68504 4.76152 4.81063 4.86878 4.89142 5.04130 5.07753 5.09865 5.21897 5.23867 5.28461 5.29002 5.36572 5.44565 5.55433 5.77936 5.86977 6.11703 6.18468 6.26484 6.86105 7.37953 8.92267 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.086493 B = 0.003307 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.646324 B = 8464.508844 C = 8583.883370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.556 5.556 3 C 0.066 3.934 4 C -0.104 4.104 5 C -0.097 4.097 6 C 0.024 3.976 7 C -0.546 4.546 8 H 0.060 0.940 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.266 1.266 15 C 0.060 3.940 16 C -0.078 4.078 17 C -0.160 4.160 18 C -0.182 4.182 19 C -0.180 4.180 20 H 0.080 0.920 21 H 0.061 0.939 22 H 0.027 0.973 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.049 0.951 29 H -0.012 1.012 30 H -0.011 1.011 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -17.756 -15.003 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.280 5.280 3 C -0.062 4.062 4 C -0.142 4.142 5 C -0.135 4.135 6 C -0.013 4.013 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.068 4.068 16 C -0.116 4.116 17 C -0.178 4.178 18 C -0.219 4.219 19 C -0.217 4.217 20 H 0.099 0.901 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.054 -17.943 -14.412 23.014 hybrid contribution -0.161 1.365 -0.239 1.395 sum -0.107 -16.577 -14.651 22.124 Atomic orbital electron populations 1.22478 0.87232 1.02598 1.00498 1.61980 1.08507 1.13729 1.43790 1.22041 1.00161 0.87693 0.96308 1.21500 1.00286 0.94896 0.97471 1.21405 0.99773 0.94599 0.97700 1.19008 0.94669 0.94395 0.93266 1.21725 1.35143 0.99291 1.02256 0.92147 1.26035 0.95484 1.03452 0.95101 1.70100 1.42155 1.38416 1.06864 0.85476 0.79121 0.78740 0.77566 1.19097 1.20762 1.19069 1.22131 1.00172 0.93713 0.90786 1.21093 1.00537 0.92923 0.97046 1.22290 1.01254 0.94579 0.99706 1.23119 0.97021 1.04537 0.97223 1.23042 1.03299 0.93138 1.02203 0.90127 0.92015 0.95469 0.90471 0.94830 0.92919 0.92754 0.92963 0.93218 0.99316 0.99282 0.92748 0.90668 0.94758 0.91742 0.91551 0.87566 0.88825 0.88219 0.88025 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.13 127.69 1.17 1.63 16 2 N -0.56 -14.29 4.76 -922.47 -4.39 -18.68 16 3 C 0.07 1.88 4.96 86.30 0.43 2.31 16 4 C -0.10 -3.69 5.15 30.59 0.16 -3.53 16 5 C -0.10 -4.10 5.15 30.59 0.16 -3.95 16 6 C 0.02 1.30 4.97 29.85 0.15 1.45 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 10 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 11 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 15 C 0.06 1.23 4.92 86.30 0.42 1.66 16 16 C -0.08 -1.40 5.42 30.60 0.17 -1.23 16 17 C -0.16 -2.43 5.73 -10.79 -0.06 -2.49 16 18 C -0.18 -2.45 10.18 30.62 0.31 -2.14 16 19 C -0.18 -2.41 10.26 30.62 0.31 -2.10 16 20 H 0.08 1.62 6.47 -2.38 -0.02 1.60 16 21 H 0.06 1.61 6.30 -2.39 -0.02 1.59 16 22 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.08 2.11 7.93 -2.38 -0.02 2.10 16 24 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 25 H 0.05 1.90 6.47 -2.39 -0.02 1.88 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.07 1.52 7.93 -2.39 -0.02 1.50 16 33 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 34 H 0.06 1.13 6.28 -2.39 -0.02 1.12 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.55 8.08 -2.39 -0.02 1.53 16 37 H 0.09 1.24 8.03 -2.39 -0.02 1.22 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -64.60 320.54 2.78 -61.82 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.96 Total: 7.92 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.91 Total: -39.98 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -4.11 Total: -76.85 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.60 2.78 -61.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385851879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.886 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds