Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46895 * 110.99872 * 2 1 4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1 5 5 C 1.53002 * 109.47611 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47287 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47013 * 180.02562 * 6 5 4 8 8 H 1.08008 * 119.99942 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00209 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00319 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99807 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47151 * 89.99757 * 11 9 7 13 13 H 1.48496 * 109.47117 * 209.99984 * 11 9 7 14 14 H 1.48504 * 109.47089 * 329.99851 * 11 9 7 15 15 C 1.46892 * 111.00189 * 236.04264 * 2 1 3 16 16 C 1.54961 * 110.92423 * 190.49504 * 15 2 1 17 17 C 1.54270 * 104.16191 * 156.29494 * 16 15 2 18 18 C 1.53869 * 106.63967 * 336.44607 * 17 16 15 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 H 1.08998 * 109.46887 * 183.95462 * 1 2 3 21 21 H 1.08998 * 109.46845 * 303.95821 * 1 2 3 22 22 H 1.09004 * 109.46731 * 63.95898 * 1 2 3 23 23 H 1.09001 * 109.47438 * 186.04864 * 3 2 1 24 24 H 1.09011 * 109.47091 * 306.04163 * 3 2 1 25 25 H 1.08997 * 109.47811 * 300.00606 * 4 3 2 26 26 H 1.09011 * 109.46704 * 59.99950 * 4 3 2 27 27 H 1.08997 * 109.46928 * 300.00498 * 5 4 3 28 28 H 1.09002 * 109.46413 * 60.00020 * 5 4 3 29 29 H 1.09001 * 109.46879 * 300.00261 * 6 5 4 30 30 H 1.08998 * 109.46945 * 60.00339 * 6 5 4 31 31 H 0.97005 * 120.00086 * 179.97438 * 10 9 7 32 32 H 1.09001 * 110.67587 * 67.18675 * 15 2 1 33 33 H 1.08997 * 110.47708 * 37.64092 * 16 15 2 34 34 H 1.09002 * 110.53308 * 274.97484 * 16 15 2 35 35 H 1.09002 * 110.03399 * 217.13605 * 17 16 15 36 36 H 1.08995 * 110.02943 * 95.75505 * 17 16 15 37 37 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 38 38 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 39 39 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 40 40 H 1.09001 * 110.48482 * 264.93365 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3181 5 6 2.1802 3.4857 1.3184 6 6 1.8167 4.1717 2.6368 7 6 2.3567 5.5786 2.6367 8 1 2.9049 5.9465 1.7819 9 6 2.1511 6.3960 3.7278 10 7 2.6229 7.6236 3.7279 11 14 1.2025 5.7598 5.2059 12 1 2.1452 5.1322 6.1664 13 1 0.5008 6.8891 5.8672 14 1 0.2073 4.7522 4.7591 15 6 1.9955 -0.7660 -1.1375 16 6 3.5225 -0.9884 -0.9956 17 6 3.8017 -2.2444 -1.8467 18 6 2.4763 -3.0211 -1.9338 19 6 1.4370 -2.2108 -1.1319 20 1 -0.3633 -1.0252 0.0709 21 1 -0.3633 0.5740 0.8524 22 1 -0.3633 0.4512 -0.9234 23 1 3.0797 1.3445 -0.1083 24 1 1.5611 1.9273 -0.8310 25 1 0.5472 2.0846 1.4264 26 1 2.0657 1.5016 2.1492 27 1 3.2645 3.4583 1.2104 28 1 1.7463 4.0418 0.4873 29 1 0.7324 4.1990 2.7452 30 1 2.2510 3.6154 3.4675 31 1 2.4779 8.1988 4.4955 32 1 1.7643 -0.2661 -2.0781 33 1 3.7866 -1.1674 0.0466 34 1 4.0716 -0.1322 -1.3876 35 1 4.5637 -2.8587 -1.3671 36 1 4.1304 -1.9538 -2.8445 37 1 2.1613 -3.1068 -2.9738 38 1 2.5952 -4.0128 -1.4971 39 1 0.4646 -2.2457 -1.6231 40 1 1.3640 -2.5876 -0.1118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385857899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -30.176404 kcal Electronic energy + Delta-G solvation = -15546.794123 eV Core-core repulsion = 13167.060943 eV Total energy + Delta-G solvation = -2379.733181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.09804 -36.17264 -34.10651 -32.12104 -29.50871 -28.87037 -27.67464 -25.78712 -23.55238 -21.05266 -20.22036 -20.06363 -19.74133 -16.64540 -16.32805 -15.77442 -15.15045 -14.65071 -14.14563 -14.12748 -13.42696 -13.36190 -12.70268 -12.65317 -12.24101 -11.94205 -11.75914 -11.60588 -11.30625 -11.06833 -11.04412 -10.94169 -10.82249 -10.65729 -10.57498 -10.31892 -9.83727 -9.61071 -9.42721 -9.10653 -8.49035 -8.26879 -5.99791 -3.97185 3.34634 3.41461 3.46297 3.91127 4.38413 4.49861 4.53856 4.76089 5.17579 5.21875 5.25514 5.34245 5.35363 5.42441 5.47005 5.49112 5.56950 5.62966 5.73277 5.78197 5.86858 5.87997 5.94177 6.03750 6.10919 6.12015 6.18603 6.24324 6.46256 6.71611 6.82817 6.97261 7.15685 7.22889 7.39343 7.52248 7.85783 8.59819 9.05594 9.63392 11.13878 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.054250 B = 0.004309 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.007031 B = 6497.129965 C = 6740.306322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.055 3.945 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.014 4.014 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.906 5.906 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.076 3.924 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.116 4.116 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.021 0.979 23 H 0.073 0.927 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -20.679 -10.511 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.260 5.260 3 C -0.073 4.073 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.051 4.051 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.137 4.137 10 N -0.546 5.546 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.033 4.033 16 C -0.154 4.154 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.154 4.154 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.040 0.960 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.904 -20.747 -9.979 23.100 hybrid contribution -0.753 0.291 0.056 0.809 sum -2.657 -20.456 -9.923 22.890 Atomic orbital electron populations 1.22430 0.87789 1.01767 1.00735 1.62107 1.07614 1.14427 1.41835 1.22234 1.00066 0.86915 0.98047 1.21706 1.00730 0.96801 0.96183 1.21425 0.99926 0.92765 0.99849 1.19566 0.96346 0.96144 0.93049 1.21200 1.35102 0.95776 1.03639 0.91151 1.25050 0.95399 0.94738 0.98469 1.69924 1.46540 1.07228 1.30879 0.86757 0.80774 0.78581 0.83051 1.20299 1.21473 1.19011 1.22661 0.95124 0.93743 0.91753 1.22402 0.94745 0.97250 1.01017 1.22093 0.97393 0.96697 0.99973 1.22086 0.95161 0.98867 0.99997 1.22412 0.97809 0.94303 1.00906 0.91671 0.90814 0.96033 0.90816 0.95195 0.92606 0.91739 0.92898 0.93128 0.96809 0.97082 0.92825 0.93804 0.90389 0.91829 0.91765 0.92064 0.92123 0.91827 0.92131 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.08 60.07 0.55 0.79 16 2 N -0.54 -6.91 4.66 -232.44 -1.08 -7.99 16 3 C 0.05 0.79 4.86 -3.83 -0.02 0.77 16 4 C -0.12 -1.94 5.14 -26.73 -0.14 -2.08 16 5 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 6 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 7 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 11 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 15 C 0.08 0.84 2.58 -65.68 -0.17 0.67 16 16 C -0.12 -1.21 5.50 -25.03 -0.14 -1.35 16 17 C -0.12 -1.05 6.80 -25.61 -0.17 -1.23 16 18 C -0.12 -1.00 6.80 -25.62 -0.17 -1.17 16 19 C -0.12 -1.09 4.99 -25.07 -0.12 -1.22 16 20 H 0.06 0.67 6.93 -51.93 -0.36 0.31 16 21 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.07 1.04 6.86 -51.93 -0.36 0.69 16 24 H 0.03 0.43 8.12 -51.92 -0.42 0.01 16 25 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 26 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.67 7.76 -51.93 -0.40 0.26 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.53 7.97 -51.93 -0.41 0.11 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -30.70 307.96 -9.03 -39.73 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -7.62 Total: -4.95 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.07 Total: -21.24 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.31 Total: -35.80 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.70 -9.03 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385857899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.556 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds