Wall clock time and date at job start Mon Mar 30 2020 03:08:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46907 * 1
3 3 C 1.46895 * 110.99872 * 2 1
4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1
5 5 C 1.53002 * 109.47611 * 179.97438 * 4 3 2
6 6 C 1.53004 * 109.47287 * 180.02562 * 5 4 3
7 7 C 1.50699 * 109.47013 * 180.02562 * 6 5 4
8 8 H 1.08008 * 119.99942 * 359.97438 * 7 6 5
9 9 C 1.37870 * 120.00209 * 179.97438 * 7 6 5
10 10 N 1.31512 * 120.00319 * 179.97438 * 9 7 6
11 11 Si 1.86805 * 119.99807 * 359.97438 * 9 7 6
12 12 H 1.48502 * 109.47151 * 89.99757 * 11 9 7
13 13 H 1.48496 * 109.47117 * 209.99984 * 11 9 7
14 14 H 1.48504 * 109.47089 * 329.99851 * 11 9 7
15 15 C 1.46892 * 111.00189 * 236.04264 * 2 1 3
16 16 C 1.54961 * 110.92423 * 190.49504 * 15 2 1
17 17 C 1.54270 * 104.16191 * 156.29494 * 16 15 2
18 18 C 1.53869 * 106.63967 * 336.44607 * 17 16 15
19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16
20 20 H 1.08998 * 109.46887 * 183.95462 * 1 2 3
21 21 H 1.08998 * 109.46845 * 303.95821 * 1 2 3
22 22 H 1.09004 * 109.46731 * 63.95898 * 1 2 3
23 23 H 1.09001 * 109.47438 * 186.04864 * 3 2 1
24 24 H 1.09011 * 109.47091 * 306.04163 * 3 2 1
25 25 H 1.08997 * 109.47811 * 300.00606 * 4 3 2
26 26 H 1.09011 * 109.46704 * 59.99950 * 4 3 2
27 27 H 1.08997 * 109.46928 * 300.00498 * 5 4 3
28 28 H 1.09002 * 109.46413 * 60.00020 * 5 4 3
29 29 H 1.09001 * 109.46879 * 300.00261 * 6 5 4
30 30 H 1.08998 * 109.46945 * 60.00339 * 6 5 4
31 31 H 0.97005 * 120.00086 * 179.97438 * 10 9 7
32 32 H 1.09001 * 110.67587 * 67.18675 * 15 2 1
33 33 H 1.08997 * 110.47708 * 37.64092 * 16 15 2
34 34 H 1.09002 * 110.53308 * 274.97484 * 16 15 2
35 35 H 1.09002 * 110.03399 * 217.13605 * 17 16 15
36 36 H 1.08995 * 110.02943 * 95.75505 * 17 16 15
37 37 H 1.08999 * 110.03405 * 119.26051 * 18 17 16
38 38 H 1.09001 * 110.03705 * 240.64196 * 18 17 16
39 39 H 1.08997 * 110.48788 * 142.28685 * 19 18 17
40 40 H 1.09001 * 110.48482 * 264.93365 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6314 2.0576 1.3181
5 6 2.1802 3.4857 1.3184
6 6 1.8167 4.1717 2.6368
7 6 2.3567 5.5786 2.6367
8 1 2.9049 5.9465 1.7819
9 6 2.1511 6.3960 3.7278
10 7 2.6229 7.6236 3.7279
11 14 1.2025 5.7598 5.2059
12 1 2.1452 5.1322 6.1664
13 1 0.5008 6.8891 5.8672
14 1 0.2073 4.7522 4.7591
15 6 1.9955 -0.7660 -1.1375
16 6 3.5225 -0.9884 -0.9956
17 6 3.8017 -2.2444 -1.8467
18 6 2.4763 -3.0211 -1.9338
19 6 1.4370 -2.2108 -1.1319
20 1 -0.3633 -1.0252 0.0709
21 1 -0.3633 0.5740 0.8524
22 1 -0.3633 0.4512 -0.9234
23 1 3.0797 1.3445 -0.1083
24 1 1.5611 1.9273 -0.8310
25 1 0.5472 2.0846 1.4264
26 1 2.0657 1.5016 2.1492
27 1 3.2645 3.4583 1.2104
28 1 1.7463 4.0418 0.4873
29 1 0.7324 4.1990 2.7452
30 1 2.2510 3.6154 3.4675
31 1 2.4779 8.1988 4.4955
32 1 1.7643 -0.2661 -2.0781
33 1 3.7866 -1.1674 0.0466
34 1 4.0716 -0.1322 -1.3876
35 1 4.5637 -2.8587 -1.3671
36 1 4.1304 -1.9538 -2.8445
37 1 2.1613 -3.1068 -2.9738
38 1 2.5952 -4.0128 -1.4971
39 1 0.4646 -2.2457 -1.6231
40 1 1.3640 -2.5876 -0.1118
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385857899.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:53
Heat of formation + Delta-G solvation = -48.283547 kcal
Electronic energy + Delta-G solvation = -15547.579308 eV
Core-core repulsion = 13167.060943 eV
Total energy + Delta-G solvation = -2380.518365 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.98403 -37.31220 -35.74256 -34.09202 -30.96817 -29.81151 -28.56273 -27.18458
-24.99973 -22.50030 -21.67370 -20.91462 -20.72505 -18.85676 -17.26779 -16.60190
-16.38022 -16.34298 -15.58521 -15.29628 -14.74247 -14.34013 -14.17887 -14.02898
-13.66910 -13.41597 -13.04563 -12.76769 -12.54876 -12.42198 -12.15600 -11.93093
-11.80839 -11.78287 -11.68276 -11.60722 -11.36750 -11.22817 -11.22073 -11.10480
-10.76519 -9.26709 -8.29883 -6.34102 1.35970 1.37755 1.50440 2.36554
2.93845 3.05417 3.61383 3.81050 4.00395 4.08249 4.17328 4.37337
4.46278 4.51435 4.54666 4.59137 4.61413 4.67401 4.79426 4.79599
4.83347 4.89131 4.98183 5.07859 5.11434 5.13926 5.18518 5.24146
5.25115 5.30517 5.36333 5.51016 5.57573 5.64276 5.68312 6.13575
6.24229 6.29627 6.74025 7.30785 8.87173
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.054250 B = 0.004309 C = 0.004153
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 516.007031 B = 6497.129965 C = 6740.306322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.543 5.543
3 C 0.062 3.938
4 C -0.104 4.104
5 C -0.095 4.095
6 C -0.011 4.011
7 C -0.536 4.536
8 H 0.029 0.971
9 C 0.001 3.999
10 N -0.953 5.953
11 Si 0.954 3.046
12 H -0.266 1.266
13 H -0.283 1.283
14 H -0.247 1.247
15 C 0.071 3.929
16 C -0.118 4.118
17 C -0.121 4.121
18 C -0.120 4.120
19 C -0.112 4.112
20 H 0.081 0.919
21 H 0.066 0.934
22 H 0.023 0.977
23 H 0.073 0.927
24 H 0.027 0.973
25 H 0.061 0.939
26 H 0.063 0.937
27 H 0.047 0.953
28 H 0.044 0.956
29 H 0.018 0.982
30 H 0.018 0.982
31 H 0.266 0.734
32 H 0.041 0.959
33 H 0.066 0.934
34 H 0.057 0.943
35 H 0.070 0.930
36 H 0.067 0.933
37 H 0.070 0.930
38 H 0.073 0.927
39 H 0.068 0.932
40 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.143 -23.101 -10.260 25.471
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.267 5.267
3 C -0.065 4.065
4 C -0.142 4.142
5 C -0.133 4.133
6 C -0.049 4.049
7 C -0.573 4.573
8 H 0.048 0.952
9 C -0.195 4.195
10 N -0.594 5.594
11 Si 0.777 3.223
12 H -0.191 1.191
13 H -0.208 1.208
14 H -0.170 1.170
15 C -0.037 4.037
16 C -0.156 4.156
17 C -0.159 4.159
18 C -0.158 4.158
19 C -0.150 4.150
20 H 0.100 0.900
21 H 0.085 0.915
22 H 0.042 0.958
23 H 0.091 0.909
24 H 0.046 0.954
25 H 0.079 0.921
26 H 0.082 0.918
27 H 0.065 0.935
28 H 0.063 0.937
29 H 0.037 0.963
30 H 0.036 0.964
31 H 0.075 0.925
32 H 0.059 0.941
33 H 0.085 0.915
34 H 0.076 0.924
35 H 0.089 0.911
36 H 0.086 0.914
37 H 0.088 0.912
38 H 0.092 0.908
39 H 0.087 0.913
40 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.978 -23.189 -9.747 25.330
hybrid contribution -0.360 1.101 -0.095 1.162
sum -3.338 -22.088 -9.842 24.411
Atomic orbital electron populations
1.22467 0.87048 1.02757 1.00494 1.62094 1.08378 1.13301 1.42945
1.22047 1.00143 0.87871 0.96488 1.21524 1.00752 0.94324 0.97555
1.21296 0.99755 0.94813 0.97429 1.19532 0.96198 0.93650 0.95500
1.21568 1.34895 0.98376 1.02510 0.95242 1.26079 0.96521 0.94811
1.02135 1.70079 1.48222 1.08869 1.32258 0.85598 0.79633 0.78486
0.78569 1.19054 1.20826 1.17013 1.22756 0.95592 0.94476 0.90851
1.22400 0.94370 0.98110 1.00693 1.22090 0.97987 0.95881 0.99959
1.22088 0.94302 0.98971 1.00452 1.22384 0.98581 0.93053 1.00952
0.90023 0.91511 0.95849 0.90864 0.95440 0.92059 0.91788 0.93454
0.93705 0.96346 0.96414 0.92481 0.94144 0.91540 0.92375 0.91105
0.91422 0.91168 0.90842 0.91290 0.91125
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.43 9.08 127.69 1.16 1.59 16
2 N -0.54 -13.12 4.66 -889.31 -4.15 -17.27 16
3 C 0.06 1.72 4.86 86.30 0.42 2.14 16
4 C -0.10 -3.32 5.14 30.59 0.16 -3.17 16
5 C -0.09 -3.82 5.15 30.60 0.16 -3.66 16
6 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16
7 C -0.54 -32.10 9.66 25.60 0.25 -31.85 16
8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16
9 C 0.00 0.05 5.47 84.65 0.46 0.52 16
10 N -0.95 -61.35 13.96 21.44 0.30 -61.05 16
11 Si 0.95 45.42 27.47 68.60 1.88 47.30 16
12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
13 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16
14 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16
15 C 0.07 1.47 2.58 46.24 0.12 1.59 16
16 C -0.12 -2.31 5.50 31.70 0.17 -2.13 16
17 C -0.12 -1.83 6.80 31.32 0.21 -1.61 16
18 C -0.12 -1.64 6.80 31.32 0.21 -1.42 16
19 C -0.11 -1.84 4.99 31.67 0.16 -1.68 16
20 H 0.08 1.47 6.93 -2.39 -0.02 1.45 16
21 H 0.07 1.52 6.30 -2.39 -0.02 1.50 16
22 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16
23 H 0.07 2.02 6.86 -2.39 -0.02 2.00 16
24 H 0.03 0.77 8.12 -2.38 -0.02 0.75 16
25 H 0.06 1.90 6.47 -2.39 -0.02 1.89 16
26 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16
27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16
28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
29 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16
30 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16
31 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16
32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
34 H 0.06 1.17 7.76 -2.39 -0.02 1.16 16
35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
39 H 0.07 1.02 7.97 -2.39 -0.02 1.00 16
40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
Total: -1.00 -65.97 307.96 2.54 -63.43
By element:
Atomic # 1 Polarization: 6.82 SS G_CDS: 0.90 Total: 7.72 kcal
Atomic # 6 Polarization: -43.73 SS G_CDS: 3.60 Total: -40.13 kcal
Atomic # 7 Polarization: -74.48 SS G_CDS: -3.85 Total: -78.32 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal
Total: -65.97 2.54 -63.43 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385857899.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.145 kcal
(2) G-P(sol) polarization free energy of solvation -65.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.826 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds