Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46895 * 110.99872 * 2 1 4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1 5 5 C 1.53002 * 109.47611 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47287 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47013 * 180.02562 * 6 5 4 8 8 H 1.08008 * 119.99942 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00209 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00319 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99807 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47151 * 89.99757 * 11 9 7 13 13 H 1.48496 * 109.47117 * 209.99984 * 11 9 7 14 14 H 1.48504 * 109.47089 * 329.99851 * 11 9 7 15 15 C 1.46892 * 111.00189 * 236.04264 * 2 1 3 16 16 C 1.54961 * 110.92423 * 190.49504 * 15 2 1 17 17 C 1.54270 * 104.16191 * 156.29494 * 16 15 2 18 18 C 1.53869 * 106.63967 * 336.44607 * 17 16 15 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 H 1.08998 * 109.46887 * 183.95462 * 1 2 3 21 21 H 1.08998 * 109.46845 * 303.95821 * 1 2 3 22 22 H 1.09004 * 109.46731 * 63.95898 * 1 2 3 23 23 H 1.09001 * 109.47438 * 186.04864 * 3 2 1 24 24 H 1.09011 * 109.47091 * 306.04163 * 3 2 1 25 25 H 1.08997 * 109.47811 * 300.00606 * 4 3 2 26 26 H 1.09011 * 109.46704 * 59.99950 * 4 3 2 27 27 H 1.08997 * 109.46928 * 300.00498 * 5 4 3 28 28 H 1.09002 * 109.46413 * 60.00020 * 5 4 3 29 29 H 1.09001 * 109.46879 * 300.00261 * 6 5 4 30 30 H 1.08998 * 109.46945 * 60.00339 * 6 5 4 31 31 H 0.97005 * 120.00086 * 179.97438 * 10 9 7 32 32 H 1.09001 * 110.67587 * 67.18675 * 15 2 1 33 33 H 1.08997 * 110.47708 * 37.64092 * 16 15 2 34 34 H 1.09002 * 110.53308 * 274.97484 * 16 15 2 35 35 H 1.09002 * 110.03399 * 217.13605 * 17 16 15 36 36 H 1.08995 * 110.02943 * 95.75505 * 17 16 15 37 37 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 38 38 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 39 39 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 40 40 H 1.09001 * 110.48482 * 264.93365 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3181 5 6 2.1802 3.4857 1.3184 6 6 1.8167 4.1717 2.6368 7 6 2.3567 5.5786 2.6367 8 1 2.9049 5.9465 1.7819 9 6 2.1511 6.3960 3.7278 10 7 2.6229 7.6236 3.7279 11 14 1.2025 5.7598 5.2059 12 1 2.1452 5.1322 6.1664 13 1 0.5008 6.8891 5.8672 14 1 0.2073 4.7522 4.7591 15 6 1.9955 -0.7660 -1.1375 16 6 3.5225 -0.9884 -0.9956 17 6 3.8017 -2.2444 -1.8467 18 6 2.4763 -3.0211 -1.9338 19 6 1.4370 -2.2108 -1.1319 20 1 -0.3633 -1.0252 0.0709 21 1 -0.3633 0.5740 0.8524 22 1 -0.3633 0.4512 -0.9234 23 1 3.0797 1.3445 -0.1083 24 1 1.5611 1.9273 -0.8310 25 1 0.5472 2.0846 1.4264 26 1 2.0657 1.5016 2.1492 27 1 3.2645 3.4583 1.2104 28 1 1.7463 4.0418 0.4873 29 1 0.7324 4.1990 2.7452 30 1 2.2510 3.6154 3.4675 31 1 2.4779 8.1988 4.4955 32 1 1.7643 -0.2661 -2.0781 33 1 3.7866 -1.1674 0.0466 34 1 4.0716 -0.1322 -1.3876 35 1 4.5637 -2.8587 -1.3671 36 1 4.1304 -1.9538 -2.8445 37 1 2.1613 -3.1068 -2.9738 38 1 2.5952 -4.0128 -1.4971 39 1 0.4646 -2.2457 -1.6231 40 1 1.3640 -2.5876 -0.1118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385857899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -48.283547 kcal Electronic energy + Delta-G solvation = -15547.579308 eV Core-core repulsion = 13167.060943 eV Total energy + Delta-G solvation = -2380.518365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98403 -37.31220 -35.74256 -34.09202 -30.96817 -29.81151 -28.56273 -27.18458 -24.99973 -22.50030 -21.67370 -20.91462 -20.72505 -18.85676 -17.26779 -16.60190 -16.38022 -16.34298 -15.58521 -15.29628 -14.74247 -14.34013 -14.17887 -14.02898 -13.66910 -13.41597 -13.04563 -12.76769 -12.54876 -12.42198 -12.15600 -11.93093 -11.80839 -11.78287 -11.68276 -11.60722 -11.36750 -11.22817 -11.22073 -11.10480 -10.76519 -9.26709 -8.29883 -6.34102 1.35970 1.37755 1.50440 2.36554 2.93845 3.05417 3.61383 3.81050 4.00395 4.08249 4.17328 4.37337 4.46278 4.51435 4.54666 4.59137 4.61413 4.67401 4.79426 4.79599 4.83347 4.89131 4.98183 5.07859 5.11434 5.13926 5.18518 5.24146 5.25115 5.30517 5.36333 5.51016 5.57573 5.64276 5.68312 6.13575 6.24229 6.29627 6.74025 7.30785 8.87173 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.054250 B = 0.004309 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.007031 B = 6497.129965 C = 6740.306322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.543 5.543 3 C 0.062 3.938 4 C -0.104 4.104 5 C -0.095 4.095 6 C -0.011 4.011 7 C -0.536 4.536 8 H 0.029 0.971 9 C 0.001 3.999 10 N -0.953 5.953 11 Si 0.954 3.046 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.247 1.247 15 C 0.071 3.929 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.112 4.112 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.023 0.977 23 H 0.073 0.927 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.266 0.734 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 -23.101 -10.260 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.267 5.267 3 C -0.065 4.065 4 C -0.142 4.142 5 C -0.133 4.133 6 C -0.049 4.049 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.195 4.195 10 N -0.594 5.594 11 Si 0.777 3.223 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.170 1.170 15 C -0.037 4.037 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.150 4.150 20 H 0.100 0.900 21 H 0.085 0.915 22 H 0.042 0.958 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.978 -23.189 -9.747 25.330 hybrid contribution -0.360 1.101 -0.095 1.162 sum -3.338 -22.088 -9.842 24.411 Atomic orbital electron populations 1.22467 0.87048 1.02757 1.00494 1.62094 1.08378 1.13301 1.42945 1.22047 1.00143 0.87871 0.96488 1.21524 1.00752 0.94324 0.97555 1.21296 0.99755 0.94813 0.97429 1.19532 0.96198 0.93650 0.95500 1.21568 1.34895 0.98376 1.02510 0.95242 1.26079 0.96521 0.94811 1.02135 1.70079 1.48222 1.08869 1.32258 0.85598 0.79633 0.78486 0.78569 1.19054 1.20826 1.17013 1.22756 0.95592 0.94476 0.90851 1.22400 0.94370 0.98110 1.00693 1.22090 0.97987 0.95881 0.99959 1.22088 0.94302 0.98971 1.00452 1.22384 0.98581 0.93053 1.00952 0.90023 0.91511 0.95849 0.90864 0.95440 0.92059 0.91788 0.93454 0.93705 0.96346 0.96414 0.92481 0.94144 0.91540 0.92375 0.91105 0.91422 0.91168 0.90842 0.91290 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.08 127.69 1.16 1.59 16 2 N -0.54 -13.12 4.66 -889.31 -4.15 -17.27 16 3 C 0.06 1.72 4.86 86.30 0.42 2.14 16 4 C -0.10 -3.32 5.14 30.59 0.16 -3.17 16 5 C -0.09 -3.82 5.15 30.60 0.16 -3.66 16 6 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 7 C -0.54 -32.10 9.66 25.60 0.25 -31.85 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C 0.00 0.05 5.47 84.65 0.46 0.52 16 10 N -0.95 -61.35 13.96 21.44 0.30 -61.05 16 11 Si 0.95 45.42 27.47 68.60 1.88 47.30 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 14 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 15 C 0.07 1.47 2.58 46.24 0.12 1.59 16 16 C -0.12 -2.31 5.50 31.70 0.17 -2.13 16 17 C -0.12 -1.83 6.80 31.32 0.21 -1.61 16 18 C -0.12 -1.64 6.80 31.32 0.21 -1.42 16 19 C -0.11 -1.84 4.99 31.67 0.16 -1.68 16 20 H 0.08 1.47 6.93 -2.39 -0.02 1.45 16 21 H 0.07 1.52 6.30 -2.39 -0.02 1.50 16 22 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 23 H 0.07 2.02 6.86 -2.39 -0.02 2.00 16 24 H 0.03 0.77 8.12 -2.38 -0.02 0.75 16 25 H 0.06 1.90 6.47 -2.39 -0.02 1.89 16 26 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 30 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 31 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.17 7.76 -2.39 -0.02 1.16 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.02 7.97 -2.39 -0.02 1.00 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -65.97 307.96 2.54 -63.43 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.90 Total: 7.72 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 3.60 Total: -40.13 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -3.85 Total: -78.32 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -65.97 2.54 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385857899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.145 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds