Wall clock time and date at job start Mon Mar 30 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47089 * 2 1 4 4 C 1.46898 * 110.99919 * 298.66919 * 3 2 1 5 5 C 1.53002 * 109.46913 * 288.35473 * 4 3 2 6 6 C 1.53004 * 109.47065 * 180.34330 * 5 4 3 7 7 C 1.52997 * 109.47320 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47114 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00017 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99864 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99874 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99953 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46691 * 90.00037 * 12 10 8 14 14 H 1.48499 * 109.47118 * 209.99984 * 12 10 8 15 15 H 1.48497 * 109.47032 * 330.00695 * 12 10 8 16 16 C 1.46903 * 110.99906 * 62.62291 * 3 2 1 17 17 C 1.53003 * 109.47020 * 66.04665 * 16 3 2 18 18 C 1.53000 * 117.49670 * 243.61842 * 17 16 3 19 19 C 1.52999 * 117.49347 * 174.99944 * 17 16 3 20 20 H 1.08999 * 109.46857 * 182.89777 * 1 2 3 21 21 H 1.08999 * 109.47000 * 302.89408 * 1 2 3 22 22 H 1.08992 * 109.47092 * 62.89768 * 1 2 3 23 23 H 1.09002 * 109.47382 * 239.99955 * 2 1 3 24 24 H 1.09001 * 109.47321 * 120.00039 * 2 1 3 25 25 H 1.08995 * 109.47154 * 48.35453 * 4 3 2 26 26 H 1.09004 * 109.47008 * 168.35755 * 4 3 2 27 27 H 1.08993 * 109.47191 * 300.34326 * 5 4 3 28 28 H 1.09000 * 109.47033 * 60.34843 * 5 4 3 29 29 H 1.09002 * 109.46755 * 300.00523 * 6 5 4 30 30 H 1.09001 * 109.47029 * 59.99869 * 6 5 4 31 31 H 1.09003 * 109.47003 * 300.00150 * 7 6 5 32 32 H 1.09001 * 109.46899 * 59.99565 * 7 6 5 33 33 H 0.96998 * 119.99736 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46786 * 186.04218 * 16 3 2 35 35 H 1.08996 * 109.47082 * 306.04476 * 16 3 2 36 36 H 1.08994 * 115.54833 * 29.33068 * 17 16 3 37 37 H 1.08998 * 117.49700 * 0.02562 * 18 17 16 38 38 H 1.08998 * 117.49596 * 145.02066 * 18 17 16 39 39 H 1.09005 * 117.49338 * 214.97668 * 19 17 16 40 40 H 1.08996 * 117.50453 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5748 2.1006 -1.2033 5 6 2.3380 1.5748 -2.4207 6 6 1.8808 2.3261 -3.6727 7 6 2.6435 1.7999 -4.8902 8 6 2.1936 2.5403 -6.1233 9 1 1.4389 3.3090 -6.0463 10 6 2.7456 2.2364 -7.3497 11 7 3.6642 1.3000 -7.4434 12 14 2.1875 3.1537 -8.8783 13 1 3.0374 4.3559 -9.0719 14 1 2.3103 2.2648 -10.0615 15 1 0.7712 3.5696 -8.7164 16 6 1.6005 2.0915 1.2179 17 6 2.2855 1.4632 2.4332 18 6 1.3921 0.7975 3.4819 19 6 2.0692 2.1342 3.7911 20 1 -0.3633 -1.0264 0.0520 21 1 -0.3633 0.5581 0.8629 22 1 -0.3633 0.4682 -0.9148 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.5063 1.9402 -1.3472 26 1 1.7696 3.1665 -1.0849 27 1 3.4069 1.7296 -2.2741 28 1 2.1383 0.5102 -2.5427 29 1 0.8118 2.1713 -3.8192 30 1 2.0804 3.3907 -3.5508 31 1 3.7125 1.9543 -4.7439 32 1 2.4435 0.7353 -5.0119 33 1 4.0523 1.0859 -8.3062 34 1 1.8831 3.1416 1.1441 35 1 0.5191 2.0132 1.3294 36 1 3.2601 1.0139 2.2434 37 1 0.3165 0.8068 3.3056 38 1 1.7790 -0.0903 3.9820 39 1 2.9016 2.1258 4.4949 40 1 1.4394 3.0234 3.8186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385882995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:53 Heat of formation + Delta-G solvation = 2.318676 kcal Electronic energy + Delta-G solvation = -15435.895722 eV Core-core repulsion = 13057.571633 eV Total energy + Delta-G solvation = -2378.324088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.95345 -36.62639 -34.30295 -32.22825 -30.27822 -28.78327 -26.00354 -24.59511 -22.82150 -22.55661 -20.69443 -19.87617 -19.51537 -16.44377 -16.15023 -15.63067 -15.28856 -14.63349 -14.40444 -13.99609 -13.49009 -13.15441 -12.49462 -12.42133 -12.06179 -12.02654 -11.73645 -11.66258 -11.35789 -11.17509 -10.97128 -10.86714 -10.57808 -10.40788 -10.36135 -10.22144 -10.01324 -9.54324 -9.20887 -8.95946 -8.29336 -8.14656 -5.94424 -3.96459 3.34912 3.40797 3.44348 3.60746 3.98163 4.50392 4.62793 4.75992 4.87085 5.04191 5.18980 5.31556 5.38168 5.40976 5.43015 5.44780 5.51616 5.61704 5.67379 5.76378 5.85957 5.90668 5.95340 6.05464 6.16319 6.22539 6.26178 6.36165 6.61180 6.88720 7.04753 7.16002 7.23434 7.33696 7.75334 7.91989 8.07262 8.50122 9.11185 9.67137 11.16945 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062947 B = 0.003928 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.711953 B = 7127.446819 C = 7206.990196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 N -0.534 5.534 4 C 0.051 3.949 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.021 3.979 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.080 3.920 17 C -0.140 4.140 18 C -0.185 4.185 19 C -0.181 4.181 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 -0.899 20.047 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.079 4.079 3 N -0.257 5.257 4 C -0.077 4.077 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.016 4.016 8 C -0.558 4.558 9 H 0.072 0.928 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.048 4.048 17 C -0.159 4.159 18 C -0.222 4.222 19 C -0.218 4.218 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.384 -0.998 19.908 20.410 hybrid contribution -1.162 0.457 -0.875 1.525 sum -5.546 -0.541 19.033 19.832 Atomic orbital electron populations 1.22412 0.98710 1.02086 1.01942 1.22154 0.92619 0.90440 1.02728 1.62234 1.59507 1.02318 1.01670 1.22300 0.97715 0.97863 0.89784 1.21621 1.00164 0.99900 0.93186 1.21599 0.99678 0.98668 0.94792 1.19085 0.95348 0.96221 0.90918 1.21301 1.22052 1.19884 0.92548 0.92807 1.25036 0.95171 0.95286 0.99061 1.69970 1.27730 1.31184 1.24686 0.86617 0.79057 0.79674 0.82781 1.20689 1.21261 1.19931 1.21721 0.96752 0.97684 0.88657 1.22305 1.00892 1.03326 0.89365 1.23036 0.98729 0.96387 1.04046 1.22936 1.03372 0.96421 0.99111 0.92311 0.92813 0.92073 0.90294 0.90937 0.94482 0.91373 0.91803 0.92668 0.93805 0.93556 0.96623 0.96754 0.93077 0.90703 0.94469 0.87029 0.89169 0.89050 0.88873 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 9.27 37.16 0.34 -1.80 16 2 C 0.05 0.59 5.74 -3.83 -0.02 0.57 16 3 N -0.53 -7.03 4.67 -234.63 -1.10 -8.12 16 4 C 0.05 0.74 4.82 -3.82 -0.02 0.72 16 5 C -0.11 -1.96 5.25 -26.73 -0.14 -2.10 16 6 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 7 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 8 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 12 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.08 0.89 5.04 -3.82 -0.02 0.87 16 17 C -0.14 -1.38 4.76 -90.62 -0.43 -1.82 16 18 C -0.18 -1.57 10.18 -26.73 -0.27 -1.84 16 19 C -0.18 -1.51 10.25 -26.73 -0.27 -1.78 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.56 6.20 -51.93 -0.32 0.24 16 22 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 23 H 0.08 1.05 6.65 -51.93 -0.35 0.70 16 24 H 0.07 0.81 7.20 -51.93 -0.37 0.43 16 25 H 0.04 0.54 5.87 -51.93 -0.31 0.23 16 26 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.98 6.74 -51.93 -0.35 0.63 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 35 H 0.04 0.40 5.76 -51.93 -0.30 0.11 16 36 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 0.75 8.03 -51.93 -0.42 0.34 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -30.12 314.76 -9.48 -39.60 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.32 Total: -3.31 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -1.52 Total: -23.12 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.36 Total: -34.94 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.12 -9.48 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385882995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.916 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds