Wall clock time and date at job start Mon Mar 30 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47089 * 2 1 4 4 C 1.46898 * 110.99919 * 298.66919 * 3 2 1 5 5 C 1.53002 * 109.46913 * 288.35473 * 4 3 2 6 6 C 1.53004 * 109.47065 * 180.34330 * 5 4 3 7 7 C 1.52997 * 109.47320 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47114 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00017 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99864 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99874 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99953 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46691 * 90.00037 * 12 10 8 14 14 H 1.48499 * 109.47118 * 209.99984 * 12 10 8 15 15 H 1.48497 * 109.47032 * 330.00695 * 12 10 8 16 16 C 1.46903 * 110.99906 * 62.62291 * 3 2 1 17 17 C 1.53003 * 109.47020 * 66.04665 * 16 3 2 18 18 C 1.53000 * 117.49670 * 243.61842 * 17 16 3 19 19 C 1.52999 * 117.49347 * 174.99944 * 17 16 3 20 20 H 1.08999 * 109.46857 * 182.89777 * 1 2 3 21 21 H 1.08999 * 109.47000 * 302.89408 * 1 2 3 22 22 H 1.08992 * 109.47092 * 62.89768 * 1 2 3 23 23 H 1.09002 * 109.47382 * 239.99955 * 2 1 3 24 24 H 1.09001 * 109.47321 * 120.00039 * 2 1 3 25 25 H 1.08995 * 109.47154 * 48.35453 * 4 3 2 26 26 H 1.09004 * 109.47008 * 168.35755 * 4 3 2 27 27 H 1.08993 * 109.47191 * 300.34326 * 5 4 3 28 28 H 1.09000 * 109.47033 * 60.34843 * 5 4 3 29 29 H 1.09002 * 109.46755 * 300.00523 * 6 5 4 30 30 H 1.09001 * 109.47029 * 59.99869 * 6 5 4 31 31 H 1.09003 * 109.47003 * 300.00150 * 7 6 5 32 32 H 1.09001 * 109.46899 * 59.99565 * 7 6 5 33 33 H 0.96998 * 119.99736 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46786 * 186.04218 * 16 3 2 35 35 H 1.08996 * 109.47082 * 306.04476 * 16 3 2 36 36 H 1.08994 * 115.54833 * 29.33068 * 17 16 3 37 37 H 1.08998 * 117.49700 * 0.02562 * 18 17 16 38 38 H 1.08998 * 117.49596 * 145.02066 * 18 17 16 39 39 H 1.09005 * 117.49338 * 214.97668 * 19 17 16 40 40 H 1.08996 * 117.50453 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5748 2.1006 -1.2033 5 6 2.3380 1.5748 -2.4207 6 6 1.8808 2.3261 -3.6727 7 6 2.6435 1.7999 -4.8902 8 6 2.1936 2.5403 -6.1233 9 1 1.4389 3.3090 -6.0463 10 6 2.7456 2.2364 -7.3497 11 7 3.6642 1.3000 -7.4434 12 14 2.1875 3.1537 -8.8783 13 1 3.0374 4.3559 -9.0719 14 1 2.3103 2.2648 -10.0615 15 1 0.7712 3.5696 -8.7164 16 6 1.6005 2.0915 1.2179 17 6 2.2855 1.4632 2.4332 18 6 1.3921 0.7975 3.4819 19 6 2.0692 2.1342 3.7911 20 1 -0.3633 -1.0264 0.0520 21 1 -0.3633 0.5581 0.8629 22 1 -0.3633 0.4682 -0.9148 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.5063 1.9402 -1.3472 26 1 1.7696 3.1665 -1.0849 27 1 3.4069 1.7296 -2.2741 28 1 2.1383 0.5102 -2.5427 29 1 0.8118 2.1713 -3.8192 30 1 2.0804 3.3907 -3.5508 31 1 3.7125 1.9543 -4.7439 32 1 2.4435 0.7353 -5.0119 33 1 4.0523 1.0859 -8.3062 34 1 1.8831 3.1416 1.1441 35 1 0.5191 2.0132 1.3294 36 1 3.2601 1.0139 2.2434 37 1 0.3165 0.8068 3.3056 38 1 1.7790 -0.0903 3.9820 39 1 2.9016 2.1258 4.4949 40 1 1.4394 3.0234 3.8186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385882995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:53 Heat of formation + Delta-G solvation = -14.431891 kcal Electronic energy + Delta-G solvation = -15436.622081 eV Core-core repulsion = 13057.571633 eV Total energy + Delta-G solvation = -2379.050447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90145 -37.56057 -36.08988 -34.18273 -31.37289 -30.34673 -27.41345 -25.94647 -24.31248 -23.19540 -22.16019 -21.30725 -20.48715 -18.40962 -17.39064 -16.72699 -16.44730 -16.31546 -15.59120 -15.18692 -14.70860 -14.37964 -14.08331 -13.64793 -13.57517 -13.25965 -13.16268 -12.82154 -12.68538 -12.36923 -12.35191 -12.18179 -12.10990 -11.91806 -11.73839 -11.33696 -11.28527 -11.17861 -10.87542 -10.75214 -10.55051 -9.16486 -8.19385 -6.31067 1.39612 1.41610 1.52722 2.41225 2.84559 3.06556 3.13151 3.87335 4.00504 4.04844 4.16962 4.19720 4.22948 4.34949 4.48791 4.53208 4.60122 4.63080 4.71496 4.80714 4.82041 4.84324 4.92254 5.04425 5.06789 5.13334 5.24513 5.29043 5.29625 5.30403 5.37979 5.44184 5.57000 5.78551 5.87467 6.18833 6.24190 6.27819 6.86506 7.38210 8.92588 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062947 B = 0.003928 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.711953 B = 7127.446819 C = 7206.990196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 N -0.546 5.546 4 C 0.061 3.939 5 C -0.100 4.100 6 C -0.096 4.096 7 C 0.024 3.976 8 C -0.545 4.545 9 H 0.060 0.940 10 C -0.003 4.003 11 N -0.935 5.935 12 Si 0.967 3.033 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.262 1.262 16 C 0.083 3.917 17 C -0.154 4.154 18 C -0.178 4.178 19 C -0.173 4.173 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.051 0.949 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -0.081 20.935 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.067 4.067 5 C -0.138 4.138 6 C -0.134 4.134 7 C -0.014 4.014 8 C -0.583 4.583 9 H 0.078 0.922 10 C -0.201 4.201 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.186 1.186 16 C -0.045 4.045 17 C -0.173 4.173 18 C -0.215 4.215 19 C -0.211 4.211 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.629 -0.177 20.819 21.567 hybrid contribution -0.733 0.161 -1.117 1.346 sum -6.362 -0.016 19.702 20.704 Atomic orbital electron populations 1.22344 0.97675 1.02859 1.01616 1.22147 0.93454 0.89844 1.02461 1.62166 1.60073 1.02812 1.01838 1.22079 0.97347 0.98062 0.89187 1.21438 0.99802 0.99238 0.93308 1.21401 0.99084 0.99021 0.93926 1.19013 0.94416 0.94771 0.93163 1.21749 1.22436 1.20362 0.93745 0.92166 1.26037 0.95057 0.96129 1.02865 1.70110 1.28879 1.32703 1.25816 0.85420 0.79125 0.78324 0.78012 1.19684 1.20673 1.18650 1.21727 0.97214 0.97466 0.88062 1.22178 1.00721 1.04765 0.89599 1.23091 0.98725 0.96806 1.02871 1.23019 1.03579 0.96643 0.97814 0.91183 0.91835 0.93420 0.91969 0.89798 0.93919 0.90847 0.92981 0.93200 0.93243 0.93045 0.99340 0.99330 0.92774 0.90857 0.93824 0.88179 0.88765 0.88312 0.88038 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.84 9.27 71.98 0.67 -3.18 16 2 C 0.05 1.14 5.74 86.30 0.50 1.63 16 3 N -0.55 -13.84 4.67 -896.23 -4.18 -18.03 16 4 C 0.06 1.73 4.82 86.30 0.42 2.15 16 5 C -0.10 -3.57 5.25 30.60 0.16 -3.41 16 6 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 7 C 0.02 1.30 4.97 29.85 0.15 1.44 16 8 C -0.54 -32.08 9.11 25.60 0.23 -31.85 16 9 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 10 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 11 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 12 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 C 0.08 1.71 5.04 86.30 0.43 2.15 16 17 C -0.15 -2.79 4.76 -10.79 -0.05 -2.84 16 18 C -0.18 -2.61 10.18 30.59 0.31 -2.30 16 19 C -0.17 -2.50 10.25 30.59 0.31 -2.19 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.06 1.18 6.20 -2.39 -0.01 1.17 16 22 H 0.05 1.11 6.35 -2.39 -0.02 1.10 16 23 H 0.06 1.65 6.65 -2.39 -0.02 1.63 16 24 H 0.08 1.76 7.20 -2.39 -0.02 1.74 16 25 H 0.04 1.18 5.87 -2.39 -0.01 1.16 16 26 H 0.07 2.01 7.82 -2.38 -0.02 2.00 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.82 6.74 -2.39 -0.02 1.80 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.07 1.53 7.86 -2.39 -0.02 1.51 16 35 H 0.04 0.85 5.76 -2.39 -0.01 0.84 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -64.49 314.76 2.85 -61.65 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.97 Total: 9.49 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 3.75 Total: -42.07 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -3.90 Total: -76.23 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.49 2.85 -61.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385882995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.216 kcal (2) G-P(sol) polarization free energy of solvation -64.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds