Wall clock time and date at job start Mon Mar 30 2020 02:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47079 * 2 1 4 4 C 1.50696 * 109.47326 * 240.00040 * 2 1 3 5 5 H 1.08007 * 119.99966 * 240.00698 * 4 2 1 6 6 C 1.37875 * 120.00199 * 59.99999 * 4 2 1 7 7 N 1.31515 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00229 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47265 * 89.99873 * 8 6 4 10 10 H 1.48498 * 109.47364 * 210.00074 * 8 6 4 11 11 H 1.48503 * 109.47036 * 330.00123 * 8 6 4 12 12 N 1.46898 * 109.46746 * 119.99824 * 2 1 3 13 13 C 1.46901 * 111.00284 * 274.99920 * 12 2 1 14 14 C 1.53001 * 109.47194 * 180.02562 * 13 12 2 15 15 H 1.09000 * 110.01150 * 305.06395 * 14 13 12 16 16 C 1.54263 * 110.03160 * 66.45480 * 14 13 12 17 17 C 1.54888 * 104.19456 * 142.89640 * 16 14 13 18 18 C 1.54897 * 102.74764 * 322.05586 * 17 16 14 19 19 C 1.53876 * 110.03065 * 183.62321 * 14 13 12 20 20 C 1.52997 * 110.03336 * 121.43013 * 19 14 13 21 21 C 1.52999 * 110.03252 * 359.97438 * 19 14 13 22 22 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47599 * 300.00340 * 1 2 3 24 24 H 1.09004 * 109.47140 * 60.00154 * 1 2 3 25 25 H 0.97002 * 120.00104 * 179.97438 * 7 6 4 26 26 H 1.00899 * 110.99578 * 151.04849 * 12 2 1 27 27 H 1.08998 * 109.47051 * 60.00084 * 13 12 2 28 28 H 1.09000 * 109.46727 * 300.00314 * 13 12 2 29 29 H 1.09001 * 110.48682 * 24.21692 * 16 14 13 30 30 H 1.09000 * 110.59778 * 261.62737 * 16 14 13 31 31 H 1.08999 * 110.75516 * 203.74455 * 17 16 14 32 32 H 1.09001 * 110.75836 * 80.36816 * 17 16 14 33 33 H 1.08998 * 110.48266 * 156.62492 * 18 17 16 34 34 H 1.09000 * 110.48216 * 279.26347 * 18 17 16 35 35 H 1.09003 * 109.47244 * 178.62237 * 20 19 14 36 36 H 1.08997 * 109.47071 * 298.61546 * 20 19 14 37 37 H 1.08997 * 109.47119 * 58.61878 * 20 19 14 38 38 H 1.09003 * 109.47056 * 301.38186 * 21 19 14 39 39 H 1.09004 * 109.47277 * 61.38278 * 21 19 14 40 40 H 1.09005 * 109.47204 * 181.38088 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0195 -0.6925 1.1995 13 6 2.0823 0.2226 2.3469 14 6 2.5960 -0.5329 3.5743 15 1 1.9772 -1.4112 3.7576 16 6 4.0636 -0.9561 3.3582 17 6 4.7165 -0.7888 4.7528 18 6 4.0406 0.4952 5.2947 19 6 2.5813 0.3899 4.8055 20 6 1.7030 -0.2143 5.9029 21 6 2.0583 1.7742 4.4168 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7096 1.1618 -3.4844 26 1 2.9172 -1.1204 1.0288 27 1 1.0870 0.6163 2.5525 28 1 2.7588 1.0462 2.1182 29 1 4.5458 -0.3034 2.6305 30 1 4.1192 -1.9951 3.0331 31 1 5.7935 -0.6490 4.6608 32 1 4.4897 -1.6433 5.3905 33 1 4.0774 0.5150 6.3839 34 1 4.5190 1.3823 4.8797 35 1 1.7186 0.4341 6.7790 36 1 0.6799 -0.3083 5.5388 37 1 2.0846 -1.1990 6.1727 38 1 2.6911 2.1956 3.6357 39 1 1.0362 1.6861 4.0482 40 1 2.0748 2.4271 5.2895 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388938739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:35 Heat of formation + Delta-G solvation = -30.554418 kcal Electronic energy + Delta-G solvation = -16347.246563 eV Core-core repulsion = 13967.496991 eV Total energy + Delta-G solvation = -2379.749573 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39906 -35.55487 -32.59107 -32.07173 -29.99733 -27.34362 -27.16192 -25.22247 -24.47174 -22.58682 -20.41748 -19.53365 -17.95919 -16.42535 -15.46925 -14.95677 -14.88052 -14.20808 -13.83715 -13.34658 -13.15601 -12.85407 -12.73514 -12.18539 -12.17005 -11.59851 -11.39802 -11.31863 -10.97469 -10.87680 -10.68988 -10.47553 -10.43266 -10.40343 -10.28598 -10.12306 -10.06669 -9.90655 -9.60937 -8.76446 -8.43633 -7.15242 -5.99356 -4.05552 3.31563 3.37697 3.40835 4.42505 4.67494 4.73515 4.85707 5.31088 5.36515 5.39074 5.47106 5.50547 5.66515 5.74404 5.78350 5.83364 5.90013 5.93373 6.03415 6.07212 6.10023 6.21125 6.32339 6.36261 6.43135 6.49563 6.53613 6.71033 6.82678 6.95212 7.19323 7.30209 7.57584 7.82197 7.96017 8.32782 8.47621 8.76087 9.06640 9.60330 11.07004 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042189 B = 0.006098 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.519547 B = 4590.637827 C = 4946.667301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.691 5.691 13 C 0.068 3.932 14 C -0.080 4.080 15 H 0.077 0.923 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.065 4.065 20 C -0.135 4.135 21 C -0.142 4.142 22 H 0.030 0.970 23 H 0.003 0.997 24 H 0.079 0.921 25 H 0.260 0.740 26 H 0.328 0.672 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -0.372 14.522 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.322 5.322 13 C -0.062 4.062 14 C -0.099 4.099 15 H 0.095 0.905 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.066 4.066 20 C -0.193 4.193 21 C -0.200 4.200 22 H 0.049 0.951 23 H 0.022 0.978 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.634 -0.489 14.532 14.987 hybrid contribution 1.001 0.143 -1.150 1.531 sum 4.635 -0.346 13.382 14.166 Atomic orbital electron populations 1.21703 0.98033 0.99228 0.99208 1.19077 0.92527 0.92256 0.85791 0.98373 1.21286 1.31299 1.12389 0.90550 0.92312 1.24926 0.95116 0.95004 0.99027 1.69904 1.36804 1.22903 1.23366 0.86533 0.79203 0.79331 0.82521 1.20629 1.21307 1.19967 1.60732 1.31967 1.33397 1.06125 1.22131 0.99416 0.93779 0.90893 1.21871 0.96184 0.98047 0.93788 0.90501 1.22418 0.95455 1.01381 0.96472 1.22471 0.99030 0.97608 0.97037 1.22480 0.94987 0.98040 0.99691 1.21169 0.94790 0.95502 0.95093 1.21881 0.99588 1.00195 0.97590 1.22008 1.01621 0.95647 1.00685 0.95056 0.97810 0.90234 0.92989 0.85465 0.91788 0.96342 0.91804 0.91623 0.92139 0.91898 0.92182 0.91795 0.93226 0.92607 0.92850 0.92212 0.92192 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 2 C 0.21 5.50 2.60 -68.87 -0.18 5.32 16 3 H 0.00 -0.04 7.80 -51.93 -0.40 -0.44 16 4 C -0.52 -14.47 8.59 -34.44 -0.30 -14.77 16 5 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.69 -15.16 6.30 -107.95 -0.68 -15.84 16 13 C 0.07 1.24 3.64 -3.82 -0.01 1.23 16 14 C -0.08 -1.19 2.81 -89.50 -0.25 -1.45 16 15 H 0.08 1.21 7.67 -51.93 -0.40 0.81 16 16 C -0.12 -1.66 5.50 -25.07 -0.14 -1.80 16 17 C -0.12 -1.43 6.91 -24.73 -0.17 -1.60 16 18 C -0.11 -1.30 5.90 -25.07 -0.15 -1.45 16 19 C -0.06 -0.82 0.94 -153.39 -0.14 -0.96 16 20 C -0.14 -1.53 8.15 37.16 0.30 -1.22 16 21 C -0.14 -1.84 7.19 37.16 0.27 -1.57 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.33 7.05 7.40 -39.29 -0.29 6.76 16 27 H 0.06 1.22 5.84 -51.93 -0.30 0.92 16 28 H 0.02 0.36 6.73 -51.93 -0.35 0.01 16 29 H 0.06 0.95 7.78 -51.93 -0.40 0.55 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 34 H 0.06 0.74 7.85 -51.93 -0.41 0.33 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.82 6.75 -51.93 -0.35 0.47 16 39 H 0.06 0.82 6.73 -51.93 -0.35 0.47 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -28.41 302.20 -8.33 -36.74 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.29 Total: 2.77 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.52 Total: -19.48 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.05 Total: -41.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.41 -8.33 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388938739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.183 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds