Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47079 * 2 1 4 4 C 1.50696 * 109.47326 * 240.00040 * 2 1 3 5 5 H 1.08007 * 119.99966 * 240.00698 * 4 2 1 6 6 C 1.37875 * 120.00199 * 59.99999 * 4 2 1 7 7 N 1.31515 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00229 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47265 * 89.99873 * 8 6 4 10 10 H 1.48498 * 109.47364 * 210.00074 * 8 6 4 11 11 H 1.48503 * 109.47036 * 330.00123 * 8 6 4 12 12 N 1.46898 * 109.46746 * 119.99824 * 2 1 3 13 13 C 1.46901 * 111.00284 * 274.99920 * 12 2 1 14 14 C 1.53001 * 109.47194 * 180.02562 * 13 12 2 15 15 H 1.09000 * 110.01150 * 305.06395 * 14 13 12 16 16 C 1.54263 * 110.03160 * 66.45480 * 14 13 12 17 17 C 1.54888 * 104.19456 * 142.89640 * 16 14 13 18 18 C 1.54897 * 102.74764 * 322.05586 * 17 16 14 19 19 C 1.53876 * 110.03065 * 183.62321 * 14 13 12 20 20 C 1.52997 * 110.03336 * 121.43013 * 19 14 13 21 21 C 1.52999 * 110.03252 * 359.97438 * 19 14 13 22 22 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47599 * 300.00340 * 1 2 3 24 24 H 1.09004 * 109.47140 * 60.00154 * 1 2 3 25 25 H 0.97002 * 120.00104 * 179.97438 * 7 6 4 26 26 H 1.00899 * 110.99578 * 151.04849 * 12 2 1 27 27 H 1.08998 * 109.47051 * 60.00084 * 13 12 2 28 28 H 1.09000 * 109.46727 * 300.00314 * 13 12 2 29 29 H 1.09001 * 110.48682 * 24.21692 * 16 14 13 30 30 H 1.09000 * 110.59778 * 261.62737 * 16 14 13 31 31 H 1.08999 * 110.75516 * 203.74455 * 17 16 14 32 32 H 1.09001 * 110.75836 * 80.36816 * 17 16 14 33 33 H 1.08998 * 110.48266 * 156.62492 * 18 17 16 34 34 H 1.09000 * 110.48216 * 279.26347 * 18 17 16 35 35 H 1.09003 * 109.47244 * 178.62237 * 20 19 14 36 36 H 1.08997 * 109.47071 * 298.61546 * 20 19 14 37 37 H 1.08997 * 109.47119 * 58.61878 * 20 19 14 38 38 H 1.09003 * 109.47056 * 301.38186 * 21 19 14 39 39 H 1.09004 * 109.47277 * 61.38278 * 21 19 14 40 40 H 1.09005 * 109.47204 * 181.38088 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0195 -0.6925 1.1995 13 6 2.0823 0.2226 2.3469 14 6 2.5960 -0.5329 3.5743 15 1 1.9772 -1.4112 3.7576 16 6 4.0636 -0.9561 3.3582 17 6 4.7165 -0.7888 4.7528 18 6 4.0406 0.4952 5.2947 19 6 2.5813 0.3899 4.8055 20 6 1.7030 -0.2143 5.9029 21 6 2.0583 1.7742 4.4168 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7096 1.1618 -3.4844 26 1 2.9172 -1.1204 1.0288 27 1 1.0870 0.6163 2.5525 28 1 2.7588 1.0462 2.1182 29 1 4.5458 -0.3034 2.6305 30 1 4.1192 -1.9951 3.0331 31 1 5.7935 -0.6490 4.6608 32 1 4.4897 -1.6433 5.3905 33 1 4.0774 0.5150 6.3839 34 1 4.5190 1.3823 4.8797 35 1 1.7186 0.4341 6.7790 36 1 0.6799 -0.3083 5.5388 37 1 2.0846 -1.1990 6.1727 38 1 2.6911 2.1956 3.6357 39 1 1.0362 1.6861 4.0482 40 1 2.0748 2.4271 5.2895 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388938739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -46.771683 kcal Electronic energy + Delta-G solvation = -16347.949797 eV Core-core repulsion = 13967.496991 eV Total energy + Delta-G solvation = -2380.452806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53422 -37.40981 -34.54262 -33.08060 -31.68967 -28.81022 -28.31581 -27.32246 -25.67264 -23.94159 -21.93176 -21.12356 -19.19084 -18.38728 -16.90724 -16.69194 -16.00089 -15.86621 -15.29311 -14.79722 -14.52343 -14.28898 -13.82826 -13.63771 -13.60091 -13.21777 -12.91550 -12.76473 -12.56350 -12.38204 -12.30387 -12.22865 -12.10120 -11.80616 -11.41460 -11.39227 -11.27533 -11.21881 -11.10160 -10.84179 -10.57824 -9.01944 -8.14403 -6.29144 1.41316 1.42413 1.52731 2.40678 3.13728 3.52430 3.67808 3.77703 3.97987 4.36236 4.40217 4.49082 4.53449 4.58739 4.64160 4.68915 4.81636 4.85876 4.92827 4.95261 5.04865 5.05780 5.08763 5.15610 5.17391 5.20917 5.27354 5.30503 5.42969 5.48077 5.53865 5.55716 5.64381 5.68508 5.86023 6.20982 6.48719 6.79298 7.01460 7.41576 8.91488 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042189 B = 0.006098 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.519547 B = 4590.637827 C = 4946.667301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.215 3.785 3 H -0.036 1.036 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.688 5.688 13 C 0.073 3.927 14 C -0.075 4.075 15 H 0.071 0.929 16 C -0.122 4.122 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.064 4.064 20 C -0.132 4.132 21 C -0.142 4.142 22 H 0.027 0.973 23 H 0.019 0.981 24 H 0.057 0.943 25 H 0.263 0.737 26 H 0.330 0.670 27 H 0.055 0.945 28 H 0.008 0.992 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -1.172 15.766 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.018 1.018 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.319 5.319 13 C -0.056 4.056 14 C -0.094 4.094 15 H 0.089 0.911 16 C -0.160 4.160 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.064 4.064 20 C -0.189 4.189 21 C -0.199 4.199 22 H 0.047 0.953 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.514 -1.295 15.798 16.481 hybrid contribution 0.708 0.432 -1.517 1.729 sum 5.222 -0.863 14.281 15.230 Atomic orbital electron populations 1.21529 0.97847 0.98775 0.98864 1.18900 0.92681 0.90591 0.87210 1.01807 1.21597 1.31744 1.12668 0.91674 0.92326 1.25775 0.95154 0.95675 1.02149 1.70033 1.37535 1.24073 1.24198 0.85454 0.78880 0.78191 0.78475 1.20016 1.20796 1.19142 1.60676 1.32096 1.33625 1.05512 1.22153 0.98918 0.93407 0.91137 1.21827 0.96600 0.97864 0.93091 0.91082 1.22407 0.94801 1.00787 0.97972 1.22449 0.99519 0.98168 0.95228 1.22473 0.93585 0.97826 1.00961 1.21179 0.96315 0.94550 0.94385 1.21854 0.98671 1.00916 0.97504 1.21987 1.00434 0.96426 1.01048 0.95342 0.96216 0.92468 0.92808 0.85237 0.92670 0.97391 0.93417 0.91801 0.90976 0.90588 0.90023 0.92139 0.91446 0.93485 0.92051 0.93786 0.93499 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 9.19 71.98 0.66 -5.19 16 2 C 0.21 11.49 2.60 44.17 0.11 11.60 16 3 H -0.04 -2.11 7.80 -2.38 -0.02 -2.13 16 4 C -0.54 -30.56 8.59 25.60 0.22 -30.34 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 8 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.69 -30.72 6.30 -495.46 -3.12 -33.85 16 13 C 0.07 2.74 3.64 86.30 0.31 3.06 16 14 C -0.07 -2.19 2.81 -10.07 -0.03 -2.22 16 15 H 0.07 2.17 7.67 -2.39 -0.02 2.15 16 16 C -0.12 -3.27 5.50 31.67 0.17 -3.10 16 17 C -0.12 -2.37 6.91 31.89 0.22 -2.15 16 18 C -0.11 -2.23 5.90 31.67 0.19 -2.04 16 19 C -0.06 -1.50 0.94 -51.46 -0.05 -1.54 16 20 C -0.13 -2.65 8.15 71.98 0.59 -2.06 16 21 C -0.14 -3.55 7.19 71.98 0.52 -3.03 16 22 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.02 0.91 7.45 -2.38 -0.02 0.89 16 24 H 0.06 3.25 6.07 -2.38 -0.01 3.23 16 25 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.33 14.42 7.40 -89.70 -0.66 13.76 16 27 H 0.05 2.15 5.84 -2.39 -0.01 2.14 16 28 H 0.01 0.32 6.73 -2.39 -0.02 0.30 16 29 H 0.05 1.42 7.78 -2.39 -0.02 1.40 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.33 7.84 -2.39 -0.02 1.31 16 34 H 0.06 1.27 7.85 -2.39 -0.02 1.25 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 1.22 6.75 -2.39 -0.02 1.20 16 39 H 0.05 1.27 6.73 -2.39 -0.02 1.26 16 40 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -60.69 302.20 2.84 -57.85 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.32 Total: 19.66 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.37 Total: -35.92 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.88 Total: -87.81 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -60.69 2.84 -57.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388938739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.080 kcal (2) G-P(sol) polarization free energy of solvation -60.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds