Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47209 * 2 1 4 4 C 1.50695 * 109.47157 * 120.00232 * 2 1 3 5 5 H 1.08006 * 120.00333 * 120.00550 * 4 2 1 6 6 C 1.37880 * 120.00045 * 299.99837 * 4 2 1 7 7 N 1.31510 * 120.00042 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47142 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46703 * 120.00104 * 8 6 4 11 11 H 1.48494 * 109.47018 * 240.00139 * 8 6 4 12 12 N 1.46907 * 109.47183 * 240.00199 * 2 1 3 13 13 C 1.46902 * 110.99951 * 84.99683 * 12 2 1 14 14 C 1.52996 * 109.46994 * 179.97438 * 13 12 2 15 15 H 1.09004 * 110.01819 * 53.60970 * 14 13 12 16 16 C 1.54268 * 110.03561 * 292.16976 * 14 13 12 17 17 C 1.54882 * 104.19625 * 217.10413 * 16 14 13 18 18 C 1.54897 * 102.74839 * 37.94120 * 17 16 14 19 19 C 1.53876 * 110.03269 * 174.99769 * 14 13 12 20 20 C 1.53001 * 110.03107 * 0.02562 * 19 14 13 21 21 C 1.52999 * 110.03467 * 238.56829 * 19 14 13 22 22 H 1.08997 * 109.47160 * 60.00394 * 1 2 3 23 23 H 1.09009 * 109.47106 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47029 * 299.99456 * 1 2 3 25 25 H 0.96994 * 120.00543 * 179.97438 * 7 6 4 26 26 H 1.00903 * 110.99744 * 321.04575 * 12 2 1 27 27 H 1.08996 * 109.46853 * 60.00462 * 13 12 2 28 28 H 1.09004 * 109.46949 * 300.00151 * 13 12 2 29 29 H 1.08997 * 110.48664 * 98.42161 * 16 14 13 30 30 H 1.09002 * 110.48180 * 335.78436 * 16 14 13 31 31 H 1.08994 * 110.76048 * 279.62794 * 17 16 14 32 32 H 1.09004 * 110.75771 * 156.25188 * 17 16 14 33 33 H 1.08996 * 110.48686 * 80.73681 * 18 17 16 34 34 H 1.09000 * 110.48484 * 203.37978 * 18 17 16 35 35 H 1.08998 * 109.46964 * 178.62030 * 20 19 14 36 36 H 1.09000 * 109.46974 * 298.61699 * 20 19 14 37 37 H 1.08994 * 109.47298 * 58.61546 * 20 19 14 38 38 H 1.08996 * 109.46857 * 301.38473 * 21 19 14 39 39 H 1.09004 * 109.46704 * 61.38363 * 21 19 14 40 40 H 1.08996 * 109.46936 * 181.37678 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1484 -2.2858 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1679 -1.5867 4.8164 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3470 14 6 2.5962 -0.5328 -3.5742 15 1 1.9919 -1.4240 -3.7438 16 6 4.0742 -0.9259 -3.3724 17 6 4.7072 -0.7574 -4.7759 18 6 4.0002 0.5089 -5.3199 19 6 2.5491 0.3794 -4.8126 20 6 2.0038 1.7565 -4.4287 21 6 1.6698 -0.2507 -5.8946 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7081 1.1608 3.4844 26 1 1.4495 -1.4979 -1.4101 27 1 2.7588 1.0462 -2.1183 28 1 1.0869 0.6163 -2.5525 29 1 4.1517 -1.9613 -3.0407 30 1 4.5521 -0.2580 -2.6556 31 1 4.4896 -1.6212 -5.4040 32 1 5.7824 -0.5960 -4.6979 33 1 4.4661 1.4084 -4.9178 34 1 4.0236 0.5205 -6.4096 35 1 1.9973 2.4023 -5.3067 36 1 0.9880 1.6516 -4.0473 37 1 2.6373 2.1964 -3.6586 38 1 2.0673 -1.2300 -6.1610 39 1 0.6531 -0.3615 -5.5175 40 1 1.6626 0.3907 -6.7759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388938741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = -28.832615 kcal Electronic energy + Delta-G solvation = -16339.756987 eV Core-core repulsion = 13960.082077 eV Total energy + Delta-G solvation = -2379.674910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35954 -35.65890 -32.55193 -32.01875 -30.03449 -27.35826 -27.08085 -25.10142 -24.40597 -22.48842 -20.31892 -20.07744 -17.98623 -16.18312 -15.41486 -14.97189 -14.65499 -14.25729 -13.77611 -13.32550 -13.18564 -12.92267 -12.73523 -12.35982 -11.93921 -11.46591 -11.43479 -11.23859 -10.97487 -10.87505 -10.80942 -10.53771 -10.41040 -10.34698 -10.26826 -10.14867 -10.07012 -9.93124 -9.62906 -8.90496 -8.32002 -7.08568 -5.93773 -3.96588 3.34281 3.41808 3.47481 4.47787 4.71195 4.75976 4.87070 5.37277 5.38568 5.41323 5.49188 5.57658 5.63753 5.70874 5.77114 5.88693 5.92365 5.96867 6.04525 6.09171 6.15233 6.22379 6.32575 6.39224 6.45997 6.55261 6.60915 6.71451 6.75128 6.86157 6.91253 7.17132 7.46017 7.79317 7.95321 8.35163 8.63715 8.71503 9.11551 9.68786 11.13352 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042155 B = 0.006085 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.049270 B = 4600.181523 C = 4950.608171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.031 0.969 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.684 5.684 13 C 0.067 3.933 14 C -0.079 4.079 15 H 0.065 0.935 16 C -0.103 4.103 17 C -0.128 4.128 18 C -0.114 4.114 19 C -0.066 4.066 20 C -0.142 4.142 21 C -0.136 4.136 22 H 0.004 0.996 23 H 0.026 0.974 24 H 0.088 0.912 25 H 0.258 0.742 26 H 0.322 0.678 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -0.723 -15.013 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.314 5.314 13 C -0.063 4.063 14 C -0.098 4.098 15 H 0.083 0.917 16 C -0.141 4.141 17 C -0.166 4.166 18 C -0.151 4.151 19 C -0.066 4.066 20 C -0.199 4.199 21 C -0.193 4.193 22 H 0.023 0.977 23 H 0.045 0.955 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.138 0.862 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.535 -0.519 -14.695 15.123 hybrid contribution -0.805 -0.261 0.702 1.100 sum 2.730 -0.780 -13.992 14.277 Atomic orbital electron populations 1.22423 1.00913 0.99057 1.00342 1.19149 0.89441 0.94350 0.86751 0.95086 1.21229 1.29842 1.12278 0.89667 0.91956 1.24962 0.95435 0.95243 0.99040 1.69894 1.37554 1.23353 1.23117 0.86472 0.78486 0.79668 0.82955 1.19759 1.21193 1.21261 1.60787 1.57828 1.09100 1.03654 1.22143 0.98102 0.95686 0.90357 1.21842 0.97076 0.97424 0.93475 0.91672 1.22248 0.94548 1.01735 0.95545 1.22532 0.99084 0.97451 0.97509 1.22467 0.94824 0.98311 0.99501 1.21183 0.94930 0.95486 0.95048 1.22006 1.01450 0.95749 1.00717 1.21886 0.99389 1.00190 0.97815 0.97739 0.95462 0.89384 0.93216 0.86227 0.91819 0.96297 0.91830 0.91166 0.92170 0.92154 0.91718 0.92321 0.93563 0.92362 0.92086 0.92839 0.92852 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.94 37.16 0.33 -3.80 16 2 C 0.21 5.40 2.57 -68.86 -0.18 5.22 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.47 16 4 C -0.49 -13.83 8.84 -34.44 -0.30 -14.14 16 5 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -26.16 11.32 55.43 0.63 -25.53 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.68 -14.70 6.05 -107.95 -0.65 -15.35 16 13 C 0.07 1.21 3.58 -3.82 -0.01 1.19 16 14 C -0.08 -1.17 2.74 -89.50 -0.25 -1.41 16 15 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 16 C -0.10 -1.50 6.19 -25.07 -0.16 -1.65 16 17 C -0.13 -1.52 6.91 -24.74 -0.17 -1.69 16 18 C -0.11 -1.31 5.90 -25.07 -0.15 -1.46 16 19 C -0.07 -0.82 0.94 -153.39 -0.14 -0.97 16 20 C -0.14 -1.82 7.19 37.16 0.27 -1.55 16 21 C -0.14 -1.51 8.15 37.16 0.30 -1.20 16 22 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 23 H 0.03 0.64 8.13 -51.92 -0.42 0.22 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.32 6.64 8.47 -39.29 -0.33 6.31 16 27 H 0.06 1.22 6.78 -51.93 -0.35 0.87 16 28 H 0.02 0.35 5.76 -51.93 -0.30 0.05 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.14 7.76 -51.93 -0.40 0.74 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.75 7.85 -51.93 -0.41 0.35 16 34 H 0.06 0.60 7.84 -51.93 -0.41 0.19 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.79 6.70 -51.93 -0.35 0.44 16 37 H 0.06 0.83 6.79 -51.93 -0.35 0.48 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -28.27 303.67 -8.36 -36.63 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.33 Total: 2.95 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -0.55 Total: -20.05 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.03 Total: -40.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.27 -8.36 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388938741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.796 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds