Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47209 * 2 1 4 4 C 1.50695 * 109.47157 * 120.00232 * 2 1 3 5 5 H 1.08006 * 120.00333 * 120.00550 * 4 2 1 6 6 C 1.37880 * 120.00045 * 299.99837 * 4 2 1 7 7 N 1.31510 * 120.00042 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47142 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46703 * 120.00104 * 8 6 4 11 11 H 1.48494 * 109.47018 * 240.00139 * 8 6 4 12 12 N 1.46907 * 109.47183 * 240.00199 * 2 1 3 13 13 C 1.46902 * 110.99951 * 84.99683 * 12 2 1 14 14 C 1.52996 * 109.46994 * 179.97438 * 13 12 2 15 15 H 1.09004 * 110.01819 * 53.60970 * 14 13 12 16 16 C 1.54268 * 110.03561 * 292.16976 * 14 13 12 17 17 C 1.54882 * 104.19625 * 217.10413 * 16 14 13 18 18 C 1.54897 * 102.74839 * 37.94120 * 17 16 14 19 19 C 1.53876 * 110.03269 * 174.99769 * 14 13 12 20 20 C 1.53001 * 110.03107 * 0.02562 * 19 14 13 21 21 C 1.52999 * 110.03467 * 238.56829 * 19 14 13 22 22 H 1.08997 * 109.47160 * 60.00394 * 1 2 3 23 23 H 1.09009 * 109.47106 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47029 * 299.99456 * 1 2 3 25 25 H 0.96994 * 120.00543 * 179.97438 * 7 6 4 26 26 H 1.00903 * 110.99744 * 321.04575 * 12 2 1 27 27 H 1.08996 * 109.46853 * 60.00462 * 13 12 2 28 28 H 1.09004 * 109.46949 * 300.00151 * 13 12 2 29 29 H 1.08997 * 110.48664 * 98.42161 * 16 14 13 30 30 H 1.09002 * 110.48180 * 335.78436 * 16 14 13 31 31 H 1.08994 * 110.76048 * 279.62794 * 17 16 14 32 32 H 1.09004 * 110.75771 * 156.25188 * 17 16 14 33 33 H 1.08996 * 110.48686 * 80.73681 * 18 17 16 34 34 H 1.09000 * 110.48484 * 203.37978 * 18 17 16 35 35 H 1.08998 * 109.46964 * 178.62030 * 20 19 14 36 36 H 1.09000 * 109.46974 * 298.61699 * 20 19 14 37 37 H 1.08994 * 109.47298 * 58.61546 * 20 19 14 38 38 H 1.08996 * 109.46857 * 301.38473 * 21 19 14 39 39 H 1.09004 * 109.46704 * 61.38363 * 21 19 14 40 40 H 1.08996 * 109.46936 * 181.37678 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1484 -2.2858 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1679 -1.5867 4.8164 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3470 14 6 2.5962 -0.5328 -3.5742 15 1 1.9919 -1.4240 -3.7438 16 6 4.0742 -0.9259 -3.3724 17 6 4.7072 -0.7574 -4.7759 18 6 4.0002 0.5089 -5.3199 19 6 2.5491 0.3794 -4.8126 20 6 2.0038 1.7565 -4.4287 21 6 1.6698 -0.2507 -5.8946 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7081 1.1608 3.4844 26 1 1.4495 -1.4979 -1.4101 27 1 2.7588 1.0462 -2.1183 28 1 1.0869 0.6163 -2.5525 29 1 4.1517 -1.9613 -3.0407 30 1 4.5521 -0.2580 -2.6556 31 1 4.4896 -1.6212 -5.4040 32 1 5.7824 -0.5960 -4.6979 33 1 4.4661 1.4084 -4.9178 34 1 4.0236 0.5205 -6.4096 35 1 1.9973 2.4023 -5.3067 36 1 0.9880 1.6516 -4.0473 37 1 2.6373 2.1964 -3.6586 38 1 2.0673 -1.2300 -6.1610 39 1 0.6531 -0.3615 -5.5175 40 1 1.6626 0.3907 -6.7759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388938741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = -44.894219 kcal Electronic energy + Delta-G solvation = -16340.453470 eV Core-core repulsion = 13960.082077 eV Total energy + Delta-G solvation = -2380.371393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49300 -37.48560 -34.51944 -33.03795 -31.68778 -28.68587 -28.31144 -27.24220 -25.56928 -23.85046 -22.12966 -21.36223 -19.18357 -18.21754 -16.79097 -16.53342 -16.12089 -15.69650 -15.25555 -14.84565 -14.44331 -14.22215 -13.99916 -13.78185 -13.53023 -12.93804 -12.88717 -12.80361 -12.71244 -12.36749 -12.33686 -12.16474 -12.04179 -11.74570 -11.52704 -11.35040 -11.31034 -11.21125 -11.13312 -10.87912 -10.49484 -8.87765 -8.09613 -6.20946 1.41530 1.42910 1.55755 2.44121 3.18360 3.53810 3.71095 3.79835 4.00671 4.35725 4.44951 4.51067 4.53039 4.61589 4.65724 4.71675 4.77913 4.84847 4.86736 4.95189 4.97622 5.02681 5.10932 5.13488 5.17915 5.19100 5.28646 5.37534 5.42334 5.48204 5.55481 5.60789 5.67718 5.69339 5.82771 6.28388 6.68012 6.86996 6.96679 7.49429 8.96231 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042155 B = 0.006085 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.049270 B = 4600.181523 C = 4950.608171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.003 1.003 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.686 5.686 13 C 0.074 3.926 14 C -0.074 4.074 15 H 0.068 0.932 16 C -0.106 4.106 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.064 4.064 20 C -0.141 4.141 21 C -0.132 4.132 22 H 0.022 0.978 23 H 0.032 0.968 24 H 0.061 0.939 25 H 0.261 0.739 26 H 0.328 0.672 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -1.514 -16.448 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.316 5.316 13 C -0.056 4.056 14 C -0.093 4.093 15 H 0.086 0.914 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.148 4.148 19 C -0.065 4.065 20 C -0.199 4.199 21 C -0.189 4.189 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.928 -1.314 -16.149 16.671 hybrid contribution -0.928 0.020 1.136 1.467 sum 3.000 -1.294 -15.013 15.364 Atomic orbital electron populations 1.22226 1.00142 0.99168 0.99873 1.18912 0.89920 0.92515 0.87948 0.98551 1.21499 1.30190 1.12342 0.91098 0.92779 1.25753 0.95510 0.95911 1.01989 1.70019 1.38204 1.24406 1.23901 0.85446 0.78078 0.78575 0.79139 1.19300 1.20760 1.20488 1.60663 1.57555 1.09621 1.03734 1.22137 0.97761 0.95108 0.90554 1.21816 0.97032 0.97588 0.92891 0.91389 1.22216 0.94531 1.00589 0.97019 1.22493 0.99465 0.98234 0.95529 1.22463 0.93634 0.97902 1.00783 1.21185 0.96266 0.94645 0.94366 1.21985 1.00353 0.96441 1.01078 1.21858 0.98613 1.00822 0.97657 0.95902 0.94902 0.92043 0.93032 0.85505 0.93501 0.96485 0.92533 0.93591 0.90716 0.91249 0.92152 0.90100 0.91539 0.93497 0.93695 0.92037 0.93412 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.69 8.94 71.98 0.64 -7.05 16 2 C 0.22 11.32 2.57 44.17 0.11 11.44 16 3 H 0.00 -0.20 7.80 -2.39 -0.02 -0.22 16 4 C -0.51 -29.32 8.84 25.60 0.23 -29.09 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.35 5.30 84.66 0.45 0.80 16 7 N -0.92 -54.57 11.32 21.45 0.24 -54.33 16 8 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 N -0.69 -29.92 6.05 -495.45 -3.00 -32.92 16 13 C 0.07 2.70 3.58 86.30 0.31 3.01 16 14 C -0.07 -2.14 2.74 -10.07 -0.03 -2.16 16 15 H 0.07 1.93 7.67 -2.38 -0.02 1.91 16 16 C -0.11 -3.01 6.19 31.67 0.20 -2.82 16 17 C -0.12 -2.56 6.91 31.89 0.22 -2.34 16 18 C -0.11 -2.25 5.90 31.67 0.19 -2.07 16 19 C -0.06 -1.48 0.94 -51.46 -0.05 -1.53 16 20 C -0.14 -3.47 7.19 71.98 0.52 -2.95 16 21 C -0.13 -2.55 8.15 71.98 0.59 -1.97 16 22 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 23 H 0.03 1.54 8.13 -2.38 -0.02 1.52 16 24 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.33 13.54 8.47 -89.69 -0.76 12.78 16 27 H 0.05 1.87 6.78 -2.39 -0.02 1.85 16 28 H 0.02 0.63 5.76 -2.39 -0.01 0.62 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.51 7.76 -2.39 -0.02 1.50 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 34 H 0.08 1.34 7.84 -2.39 -0.02 1.32 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.24 6.70 -2.39 -0.02 1.22 16 37 H 0.04 1.23 6.79 -2.39 -0.02 1.21 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -60.57 303.67 2.87 -57.70 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.22 Total: 19.38 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 3.37 Total: -36.74 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.76 Total: -87.25 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -60.57 2.87 -57.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388938741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.805 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds