Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46797 * 2 1 4 4 C 1.52998 * 109.47167 * 120.00093 * 2 1 3 5 5 C 1.53001 * 109.46943 * 174.18919 * 4 2 1 6 6 C 1.52998 * 115.56195 * 91.33805 * 5 4 2 7 7 N 1.46901 * 109.47415 * 29.81964 * 6 5 4 8 8 C 1.46896 * 111.00394 * 185.12176 * 7 6 5 9 9 H 1.09001 * 109.46893 * 35.00529 * 8 7 6 10 10 C 1.52998 * 109.47374 * 275.00373 * 8 7 6 11 11 C 1.50703 * 109.47150 * 155.00176 * 8 7 6 12 12 H 1.08007 * 119.99637 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00180 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99621 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99906 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47214 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46942 * 120.00060 * 15 13 11 18 18 H 1.48502 * 109.46995 * 240.00263 * 15 13 11 19 19 C 1.53004 * 117.50110 * 305.64678 * 5 4 2 20 20 C 1.52999 * 117.49837 * 237.02517 * 5 4 2 21 21 H 1.08996 * 109.46893 * 299.99485 * 1 2 3 22 22 H 1.08994 * 109.47254 * 59.99948 * 1 2 3 23 23 H 1.09005 * 109.46561 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47413 * 240.00591 * 2 1 3 25 25 H 1.08996 * 109.46901 * 65.53473 * 3 2 1 26 26 H 1.09004 * 109.46670 * 185.52951 * 3 2 1 27 27 H 1.08998 * 109.47396 * 305.53039 * 3 2 1 28 28 H 1.08997 * 109.47197 * 54.19215 * 4 2 1 29 29 H 1.09001 * 109.47279 * 294.19069 * 4 2 1 30 30 H 1.08999 * 109.47043 * 149.82293 * 6 5 4 31 31 H 1.09003 * 109.46994 * 269.82260 * 6 5 4 32 32 H 1.00903 * 110.99728 * 61.16763 * 7 6 5 33 33 H 1.09006 * 109.46776 * 300.00043 * 10 8 7 34 34 H 1.08997 * 109.47236 * 59.99757 * 10 8 7 35 35 H 1.08998 * 109.46975 * 180.02562 * 10 8 7 36 36 H 0.97001 * 119.99409 * 179.97438 * 14 13 11 37 37 H 1.09004 * 117.49741 * 145.01638 * 19 5 4 38 38 H 1.08995 * 117.49488 * 0.02562 * 19 5 4 39 39 H 1.09000 * 117.50019 * 0.02562 * 20 5 4 40 40 H 1.09007 * 117.49668 * 214.97763 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5630 -0.8489 1.1783 6 6 4.3520 0.2929 1.8222 7 7 3.5746 0.8604 2.9319 8 6 4.2465 2.0380 3.4974 9 1 4.7491 2.5868 2.7010 10 6 5.2764 1.5881 4.5355 11 6 3.2263 2.9305 4.1560 12 1 2.1830 2.6510 4.1542 13 6 3.6245 4.1043 4.7598 14 7 4.8947 4.4452 4.7606 15 14 2.3598 5.2109 5.5755 16 1 1.0105 4.6064 5.4372 17 1 2.6891 5.3611 7.0158 18 1 2.3746 6.5446 4.9226 19 6 4.1598 -1.5046 -0.0688 20 6 4.1588 -2.2556 1.2642 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.7598 1.9269 0.9354 26 1 3.1255 1.4441 -0.0990 27 1 1.5980 1.9842 -0.8363 28 1 1.5943 -1.7145 1.3027 29 1 1.7641 -0.1509 2.1362 30 1 5.3002 -0.0888 2.2006 31 1 4.5426 1.0671 1.0789 32 1 3.4009 0.1666 3.6437 33 1 4.7737 1.0393 5.3319 34 1 6.0143 0.9426 4.0591 35 1 5.7746 2.4619 4.9553 36 1 5.1749 5.2712 5.1851 37 1 5.1143 -1.1223 -0.4305 38 1 3.4673 -1.8445 -0.8388 39 1 3.4657 -3.0900 1.3709 40 1 5.1129 -2.3674 1.7795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389301029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = 2.385074 kcal Electronic energy + Delta-G solvation = -16407.192192 eV Core-core repulsion = 14028.870983 eV Total energy + Delta-G solvation = -2378.321209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.76781 -35.43295 -34.52098 -32.24807 -28.84054 -26.81849 -26.68337 -25.16119 -24.22063 -22.30827 -20.11371 -19.98048 -18.28421 -16.39269 -15.46472 -14.82176 -14.46225 -14.11991 -13.92158 -13.52255 -13.06820 -12.78754 -12.31930 -11.94521 -11.76351 -11.59442 -11.52082 -11.31230 -11.00440 -10.93602 -10.75694 -10.61441 -10.38914 -10.26983 -10.11579 -10.09800 -9.92280 -9.62470 -9.15083 -8.92904 -8.32916 -7.12981 -5.95019 -3.97661 3.33396 3.41248 3.46348 4.03310 4.46906 4.92893 5.07919 5.17166 5.26593 5.36872 5.44457 5.48956 5.67042 5.75385 5.82669 6.02181 6.06047 6.09667 6.14582 6.21099 6.27858 6.33088 6.37576 6.42208 6.59516 6.63107 6.73562 6.80177 6.88831 6.92395 7.08802 7.16578 7.43416 7.78085 7.93761 8.33120 8.60774 8.68122 9.10279 9.67700 11.12131 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.007712 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.629999 B = 3629.940542 C = 4323.121644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.075 4.075 5 C -0.104 4.104 6 C 0.097 3.903 7 N -0.674 5.674 8 C 0.212 3.788 9 H 0.032 0.968 10 C -0.169 4.169 11 C -0.489 4.489 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.179 4.179 20 C -0.184 4.184 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.015 0.985 31 H 0.068 0.932 32 H 0.324 0.676 33 H 0.027 0.973 34 H 0.003 0.997 35 H 0.087 0.913 36 H 0.258 0.742 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -10.018 -7.896 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.198 4.198 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.033 4.033 7 N -0.303 5.303 8 C 0.104 3.896 9 H 0.050 0.950 10 C -0.228 4.228 11 C -0.528 4.528 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.217 4.217 20 C -0.221 4.221 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.046 0.954 34 H 0.022 0.978 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.778 -9.478 -8.246 13.119 hybrid contribution 0.344 0.166 0.923 0.999 sum -3.434 -9.312 -7.323 12.334 Atomic orbital electron populations 1.21840 0.96162 1.00717 1.01605 1.21023 0.94552 0.97234 0.97673 1.21832 1.01015 0.95059 1.01882 1.21175 0.90963 0.99296 0.99810 1.21642 0.95929 0.92968 0.99925 1.21436 0.92816 0.94215 0.94839 1.60765 1.48135 1.09552 1.11879 1.19160 0.91451 0.86747 0.92248 0.95044 1.22435 0.99343 1.00879 1.00164 1.21194 0.94155 1.03907 1.33571 0.91915 1.24952 0.95234 0.97870 0.96586 1.69900 1.14575 1.23926 1.45455 0.86492 0.81803 0.80500 0.78899 1.19751 1.21312 1.21223 1.22941 1.02339 1.05032 0.91359 1.23138 1.02417 0.95568 1.01003 0.92402 0.93380 0.93586 0.92588 0.90885 0.92663 0.94622 0.93674 0.88386 0.96706 0.91355 0.85957 0.95413 0.97787 0.89403 0.93229 0.89414 0.89219 0.89442 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 37.16 0.34 -1.49 16 2 C -0.09 -1.20 2.79 -90.62 -0.25 -1.45 16 3 C -0.14 -2.22 8.56 37.16 0.32 -1.90 16 4 C -0.08 -1.09 4.66 -26.73 -0.12 -1.22 16 5 C -0.10 -1.54 1.62 -154.51 -0.25 -1.79 16 6 C 0.10 1.73 4.91 -3.82 -0.02 1.71 16 7 N -0.67 -13.75 4.53 -107.95 -0.49 -14.24 16 8 C 0.21 5.23 2.57 -68.87 -0.18 5.05 16 9 H 0.03 0.86 7.72 -51.93 -0.40 0.46 16 10 C -0.17 -4.07 8.94 37.16 0.33 -3.74 16 11 C -0.49 -13.34 8.84 -34.44 -0.30 -13.65 16 12 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.05 1.49 5.30 -17.82 -0.09 1.39 16 14 N -0.90 -25.77 11.32 55.43 0.63 -25.14 16 15 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 C -0.18 -2.31 9.36 -26.73 -0.25 -2.56 16 20 C -0.18 -2.41 9.82 -26.73 -0.26 -2.67 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.73 6.75 -51.93 -0.35 0.38 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.05 0.91 5.78 -51.93 -0.30 0.61 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.61 7.87 -51.93 -0.41 0.20 16 29 H 0.10 1.65 6.52 -51.93 -0.34 1.31 16 30 H 0.01 0.27 7.30 -51.93 -0.38 -0.11 16 31 H 0.07 1.29 6.35 -51.93 -0.33 0.96 16 32 H 0.32 6.45 8.46 -39.29 -0.33 6.12 16 33 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.00 0.07 7.55 -51.93 -0.39 -0.32 16 35 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.07 7.21 -51.93 -0.37 0.69 16 39 H 0.09 1.05 8.03 -51.93 -0.42 0.63 16 40 H 0.09 1.14 8.03 -51.93 -0.42 0.73 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -27.10 310.03 -8.21 -35.31 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.26 Total: 5.21 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -0.74 Total: -22.32 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.14 Total: -39.38 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.10 -8.21 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389301029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.694 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds