Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46797 * 2 1 4 4 C 1.52998 * 109.47167 * 120.00093 * 2 1 3 5 5 C 1.53001 * 109.46943 * 174.18919 * 4 2 1 6 6 C 1.52998 * 115.56195 * 91.33805 * 5 4 2 7 7 N 1.46901 * 109.47415 * 29.81964 * 6 5 4 8 8 C 1.46896 * 111.00394 * 185.12176 * 7 6 5 9 9 H 1.09001 * 109.46893 * 35.00529 * 8 7 6 10 10 C 1.52998 * 109.47374 * 275.00373 * 8 7 6 11 11 C 1.50703 * 109.47150 * 155.00176 * 8 7 6 12 12 H 1.08007 * 119.99637 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00180 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99621 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99906 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47214 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46942 * 120.00060 * 15 13 11 18 18 H 1.48502 * 109.46995 * 240.00263 * 15 13 11 19 19 C 1.53004 * 117.50110 * 305.64678 * 5 4 2 20 20 C 1.52999 * 117.49837 * 237.02517 * 5 4 2 21 21 H 1.08996 * 109.46893 * 299.99485 * 1 2 3 22 22 H 1.08994 * 109.47254 * 59.99948 * 1 2 3 23 23 H 1.09005 * 109.46561 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47413 * 240.00591 * 2 1 3 25 25 H 1.08996 * 109.46901 * 65.53473 * 3 2 1 26 26 H 1.09004 * 109.46670 * 185.52951 * 3 2 1 27 27 H 1.08998 * 109.47396 * 305.53039 * 3 2 1 28 28 H 1.08997 * 109.47197 * 54.19215 * 4 2 1 29 29 H 1.09001 * 109.47279 * 294.19069 * 4 2 1 30 30 H 1.08999 * 109.47043 * 149.82293 * 6 5 4 31 31 H 1.09003 * 109.46994 * 269.82260 * 6 5 4 32 32 H 1.00903 * 110.99728 * 61.16763 * 7 6 5 33 33 H 1.09006 * 109.46776 * 300.00043 * 10 8 7 34 34 H 1.08997 * 109.47236 * 59.99757 * 10 8 7 35 35 H 1.08998 * 109.46975 * 180.02562 * 10 8 7 36 36 H 0.97001 * 119.99409 * 179.97438 * 14 13 11 37 37 H 1.09004 * 117.49741 * 145.01638 * 19 5 4 38 38 H 1.08995 * 117.49488 * 0.02562 * 19 5 4 39 39 H 1.09000 * 117.50019 * 0.02562 * 20 5 4 40 40 H 1.09007 * 117.49668 * 214.97763 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5630 -0.8489 1.1783 6 6 4.3520 0.2929 1.8222 7 7 3.5746 0.8604 2.9319 8 6 4.2465 2.0380 3.4974 9 1 4.7491 2.5868 2.7010 10 6 5.2764 1.5881 4.5355 11 6 3.2263 2.9305 4.1560 12 1 2.1830 2.6510 4.1542 13 6 3.6245 4.1043 4.7598 14 7 4.8947 4.4452 4.7606 15 14 2.3598 5.2109 5.5755 16 1 1.0105 4.6064 5.4372 17 1 2.6891 5.3611 7.0158 18 1 2.3746 6.5446 4.9226 19 6 4.1598 -1.5046 -0.0688 20 6 4.1588 -2.2556 1.2642 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.7598 1.9269 0.9354 26 1 3.1255 1.4441 -0.0990 27 1 1.5980 1.9842 -0.8363 28 1 1.5943 -1.7145 1.3027 29 1 1.7641 -0.1509 2.1362 30 1 5.3002 -0.0888 2.2006 31 1 4.5426 1.0671 1.0789 32 1 3.4009 0.1666 3.6437 33 1 4.7737 1.0393 5.3319 34 1 6.0143 0.9426 4.0591 35 1 5.7746 2.4619 4.9553 36 1 5.1749 5.2712 5.1851 37 1 5.1143 -1.1223 -0.4305 38 1 3.4673 -1.8445 -0.8388 39 1 3.4657 -3.0900 1.3709 40 1 5.1129 -2.3674 1.7795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389301029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -11.620732 kcal Electronic energy + Delta-G solvation = -16407.799529 eV Core-core repulsion = 14028.870983 eV Total energy + Delta-G solvation = -2378.928546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98677 -37.22030 -35.65823 -34.22819 -30.63168 -27.99816 -27.87792 -27.23958 -25.82540 -23.34832 -22.06605 -21.14792 -19.52435 -18.31433 -16.89764 -16.67386 -15.86460 -15.47740 -15.33511 -14.85749 -14.61107 -14.43028 -13.62075 -13.48374 -13.46645 -12.96916 -12.90177 -12.81788 -12.71688 -12.37458 -12.32789 -12.16770 -12.11350 -11.90907 -11.60789 -11.42438 -11.24842 -11.06357 -10.80456 -10.46932 -10.28093 -8.84835 -8.07471 -6.17551 1.41666 1.43702 1.55745 2.45125 2.94445 3.21205 3.60980 3.92603 4.08314 4.11200 4.25162 4.33603 4.39461 4.55533 4.70856 4.79633 4.81482 4.84374 4.91863 4.94123 5.00701 5.09178 5.09943 5.13656 5.16393 5.26433 5.33838 5.41180 5.45477 5.46903 5.60810 5.64212 5.71710 5.85711 5.86225 6.31133 6.70799 6.88970 6.99765 7.52484 8.98412 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.007712 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.629999 B = 3629.940542 C = 4323.121644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.070 4.070 5 C -0.122 4.122 6 C 0.103 3.897 7 N -0.668 5.668 8 C 0.218 3.782 9 H -0.003 1.003 10 C -0.156 4.156 11 C -0.504 4.504 12 H 0.055 0.945 13 C 0.006 3.994 14 N -0.925 5.925 15 Si 0.957 3.043 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.284 1.284 19 C -0.165 4.165 20 C -0.173 4.173 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.050 0.950 32 H 0.329 0.671 33 H 0.032 0.968 34 H 0.020 0.980 35 H 0.060 0.940 36 H 0.259 0.741 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -11.553 -8.638 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.192 4.192 4 C -0.107 4.107 5 C -0.123 4.123 6 C -0.027 4.027 7 N -0.297 5.297 8 C 0.110 3.890 9 H 0.015 0.985 10 C -0.216 4.216 11 C -0.543 4.543 12 H 0.074 0.926 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.210 1.210 19 C -0.203 4.203 20 C -0.210 4.210 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.809 -11.031 -8.993 15.023 hybrid contribution 0.701 0.629 1.115 1.460 sum -4.108 -10.402 -7.878 13.680 Atomic orbital electron populations 1.21808 0.95011 1.01818 1.01394 1.21013 0.95499 0.95562 0.98011 1.21750 1.00252 0.96743 1.00464 1.21092 0.90863 0.99845 0.98942 1.21459 0.95756 0.92934 1.02110 1.21375 0.92927 0.94857 0.93513 1.60638 1.48083 1.08759 1.12240 1.18896 0.91043 0.87910 0.91196 0.98494 1.22251 0.99336 0.99948 1.00037 1.21461 0.94275 1.04753 1.33810 0.92635 1.25708 0.96994 0.99234 0.97197 1.70027 1.16138 1.24336 1.46098 0.85513 0.79634 0.78536 0.77965 1.19216 1.20737 1.20965 1.23016 1.02425 1.03564 0.91257 1.23207 1.02423 0.94619 1.00742 0.93844 0.92417 0.91811 0.90937 0.94268 0.93974 0.93451 0.91806 0.91100 0.97173 0.93124 0.85415 0.94908 0.96068 0.92165 0.93180 0.89347 0.87433 0.87680 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.19 71.98 0.66 -2.62 16 2 C -0.08 -2.13 2.79 -10.79 -0.03 -2.16 16 3 C -0.13 -4.25 8.56 71.98 0.62 -3.63 16 4 C -0.07 -1.93 4.66 30.59 0.14 -1.78 16 5 C -0.12 -3.42 1.62 -52.18 -0.08 -3.50 16 6 C 0.10 3.69 4.91 86.30 0.42 4.11 16 7 N -0.67 -27.73 4.53 -495.46 -2.24 -29.97 16 8 C 0.22 11.09 2.57 44.17 0.11 11.20 16 9 H 0.00 -0.17 7.72 -2.39 -0.02 -0.18 16 10 C -0.16 -7.64 8.94 71.98 0.64 -7.00 16 11 C -0.50 -28.07 8.84 25.60 0.23 -27.84 16 12 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 13 C 0.01 0.35 5.30 84.65 0.45 0.80 16 14 N -0.93 -54.09 11.32 21.45 0.24 -53.85 16 15 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 C -0.17 -3.79 9.36 30.60 0.29 -3.51 16 20 C -0.17 -4.03 9.82 30.59 0.30 -3.73 16 21 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.07 1.67 6.75 -2.39 -0.02 1.65 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.41 5.78 -2.39 -0.01 1.39 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.52 7.87 -2.39 -0.02 1.50 16 29 H 0.07 2.36 6.52 -2.39 -0.02 2.34 16 30 H 0.01 0.37 7.30 -2.39 -0.02 0.35 16 31 H 0.05 1.97 6.35 -2.39 -0.02 1.96 16 32 H 0.33 13.12 8.46 -89.69 -0.76 12.37 16 33 H 0.03 1.52 8.13 -2.38 -0.02 1.50 16 34 H 0.02 0.91 7.55 -2.39 -0.02 0.90 16 35 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.11 2.12 7.21 -2.39 -0.02 2.10 16 39 H 0.10 2.11 8.03 -2.39 -0.02 2.09 16 40 H 0.09 2.04 8.03 -2.38 -0.02 2.02 16 Total: -1.00 -58.47 310.03 4.01 -54.46 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.23 Total: 22.46 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 3.75 Total: -39.66 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -2.00 Total: -83.82 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -58.47 4.01 -54.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389301029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.841 kcal (2) G-P(sol) polarization free energy of solvation -58.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds