Wall clock time and date at job start Mon Mar 30 2020 02:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47437 * 2 1 4 4 C 1.53000 * 109.47254 * 119.99872 * 2 1 3 5 5 C 1.53003 * 109.47179 * 65.76182 * 4 2 1 6 6 C 1.53001 * 115.54706 * 54.75367 * 5 4 2 7 7 N 1.46897 * 109.47401 * 40.19682 * 6 5 4 8 8 C 1.46892 * 111.00192 * 175.28528 * 7 6 5 9 9 H 1.09003 * 109.47223 * 328.30342 * 8 7 6 10 10 C 1.53004 * 109.47509 * 88.30574 * 8 7 6 11 11 C 1.50701 * 109.47054 * 208.30964 * 8 7 6 12 12 H 1.07994 * 120.00284 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99973 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99904 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00050 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47073 * 120.00059 * 15 13 11 18 18 H 1.48503 * 109.47143 * 239.99831 * 15 13 11 19 19 C 1.52993 * 117.51962 * 200.45270 * 5 4 2 20 20 C 1.53000 * 117.49915 * 269.08438 * 5 4 2 21 21 H 1.09008 * 109.46647 * 64.18329 * 1 2 3 22 22 H 1.08990 * 109.47085 * 184.18496 * 1 2 3 23 23 H 1.08996 * 109.47085 * 304.18961 * 1 2 3 24 24 H 1.09001 * 109.47723 * 239.99977 * 2 1 3 25 25 H 1.09000 * 109.47383 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46978 * 299.99735 * 3 2 1 27 27 H 1.09002 * 109.47375 * 59.99966 * 3 2 1 28 28 H 1.09001 * 109.47205 * 305.76598 * 4 2 1 29 29 H 1.08998 * 109.47990 * 185.76575 * 4 2 1 30 30 H 1.09002 * 109.47080 * 280.19617 * 6 5 4 31 31 H 1.08994 * 109.47152 * 160.20246 * 6 5 4 32 32 H 1.00895 * 110.99938 * 51.32923 * 7 6 5 33 33 H 1.08998 * 109.47269 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.46686 * 300.00387 * 10 8 7 35 35 H 1.09004 * 109.46554 * 59.99785 * 10 8 7 36 36 H 0.96996 * 119.99919 * 179.97438 * 14 13 11 37 37 H 1.09002 * 117.50040 * 214.97303 * 19 5 4 38 38 H 1.09005 * 117.50303 * 359.97438 * 19 5 4 39 39 H 1.08999 * 117.49770 * 359.97227 * 20 5 4 40 40 H 1.08996 * 117.49879 * 144.99587 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6517 -2.1995 1.1790 6 6 2.1003 -2.9403 -0.0823 7 7 3.4567 -2.5100 -0.4467 8 6 3.9648 -3.2816 -1.5887 9 1 3.5488 -4.2887 -1.5608 10 6 3.5519 -2.5952 -2.8923 11 6 5.4682 -3.3570 -1.5150 12 1 5.9936 -2.8791 -0.7015 13 6 6.1729 -4.0351 -2.4869 14 7 5.5331 -4.6166 -3.4779 15 14 8.0364 -4.1280 -2.3960 16 1 8.5102 -3.3982 -1.1927 17 1 8.4576 -5.5494 -2.3100 18 1 8.6227 -3.5108 -3.6128 19 6 1.6283 -2.9873 2.4903 20 6 0.3155 -2.6093 1.8014 21 1 -0.3633 0.4476 -0.9252 22 1 -0.3633 -1.0248 0.0750 23 1 -0.3633 0.5775 0.8500 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9564 0.8900 28 1 1.5948 -0.2704 2.1362 29 1 3.1251 -0.6327 1.3025 30 1 1.4155 -2.7139 -0.8996 31 1 2.0980 -4.0137 0.1066 32 1 4.0818 -2.5780 0.3424 33 1 3.9293 -3.1675 -3.7397 34 1 2.4646 -2.5407 -2.9455 35 1 3.9679 -1.5881 -2.9202 36 1 6.0289 -5.0934 -4.1619 37 1 1.9324 -4.0334 2.4544 38 1 1.8899 -2.4527 3.4035 39 1 -0.2868 -1.8258 2.2614 40 1 -0.2441 -3.4066 1.3124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389301038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:56 Heat of formation + Delta-G solvation = -16.870205 kcal Electronic energy + Delta-G solvation = -16358.180174 eV Core-core repulsion = 13979.023993 eV Total energy + Delta-G solvation = -2379.156181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99665 -37.13113 -35.71588 -34.22484 -30.67995 -28.12535 -27.88510 -27.39863 -25.84989 -23.19472 -21.72558 -21.25031 -19.70150 -18.39106 -16.93044 -16.55265 -16.03180 -15.62395 -15.16274 -14.95073 -14.57201 -14.32438 -13.90509 -13.64264 -13.31371 -12.96364 -12.86231 -12.68929 -12.58652 -12.47959 -12.30416 -12.20485 -12.10036 -12.06211 -11.76032 -11.49820 -11.19180 -10.93516 -10.69165 -10.57783 -10.33166 -8.98479 -8.13410 -6.27623 1.40276 1.42025 1.53873 2.40938 2.92356 3.15151 3.60019 3.84780 4.06268 4.13386 4.21764 4.35540 4.40519 4.57030 4.75445 4.79498 4.82275 4.90930 4.93244 5.00611 5.05407 5.06960 5.10300 5.11709 5.23598 5.24769 5.30453 5.32104 5.38772 5.48407 5.59516 5.66465 5.68010 5.82267 5.89239 6.22704 6.50413 6.81059 7.03729 7.43128 8.92416 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030916 B = 0.006825 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.467546 B = 4101.607058 C = 4367.816645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.051 4.051 5 C -0.125 4.125 6 C 0.105 3.895 7 N -0.670 5.670 8 C 0.216 3.784 9 H -0.036 1.036 10 C -0.108 4.108 11 C -0.535 4.535 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.962 3.038 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.280 1.280 19 C -0.180 4.180 20 C -0.158 4.158 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.002 0.998 32 H 0.330 0.670 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 7.419 9.833 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.197 4.197 4 C -0.089 4.089 5 C -0.125 4.125 6 C -0.024 4.024 7 N -0.300 5.300 8 C 0.107 3.893 9 H -0.018 1.018 10 C -0.166 4.166 11 C -0.574 4.574 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.787 3.213 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.217 4.217 20 C -0.195 4.195 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.020 0.980 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.331 7.840 9.277 15.317 hybrid contribution 1.201 -1.380 -0.089 1.832 sum -8.130 6.460 9.188 13.865 Atomic orbital electron populations 1.21846 0.94911 1.01779 1.01288 1.21004 0.95880 0.95762 0.98633 1.21763 1.00447 0.95912 1.01578 1.20861 1.00177 0.90459 0.97380 1.21475 1.01899 0.96218 0.92902 1.21346 0.91553 0.94076 0.95444 1.60636 1.02445 1.57761 1.09141 1.18905 0.93214 0.88660 0.88496 1.01823 1.21489 0.96125 0.98893 1.00139 1.21657 0.92541 1.33403 1.09788 0.92252 1.25745 1.03163 0.94882 0.94907 1.70039 1.36925 1.35620 1.13295 0.85447 0.79936 0.77678 0.78195 1.19007 1.20688 1.20565 1.23123 1.02075 1.00201 0.96252 1.23051 0.90077 1.03367 1.03008 0.93521 0.92628 0.91960 0.92504 0.93825 0.93045 0.91880 0.91378 0.92748 0.92718 0.98011 0.85295 0.92720 0.96371 0.95340 0.92891 0.90079 0.87593 0.87015 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.92 71.98 0.64 -2.59 16 2 C -0.09 -2.57 2.75 -10.79 -0.03 -2.60 16 3 C -0.14 -3.42 9.19 71.98 0.66 -2.76 16 4 C -0.05 -1.37 4.12 30.60 0.13 -1.24 16 5 C -0.12 -3.50 1.44 -52.18 -0.08 -3.58 16 6 C 0.11 3.87 4.71 86.30 0.41 4.28 16 7 N -0.67 -28.61 5.02 -495.46 -2.49 -31.09 16 8 C 0.22 11.25 2.62 44.17 0.12 11.37 16 9 H -0.04 -2.08 7.67 -2.39 -0.02 -2.10 16 10 C -0.11 -5.55 9.24 71.98 0.67 -4.88 16 11 C -0.54 -29.86 8.59 25.60 0.22 -29.64 16 12 H 0.06 3.24 7.57 -2.91 -0.02 3.22 16 13 C 0.01 0.67 5.30 84.66 0.45 1.12 16 14 N -0.92 -53.87 11.32 21.45 0.24 -53.63 16 15 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C -0.18 -4.42 9.90 30.59 0.30 -4.11 16 20 C -0.16 -3.57 8.20 30.59 0.25 -3.32 16 21 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 22 H 0.05 1.30 6.00 -2.39 -0.01 1.29 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.97 6.64 -2.39 -0.02 1.95 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 29 H 0.05 1.63 7.81 -2.39 -0.02 1.62 16 30 H 0.05 2.09 7.54 -2.39 -0.02 2.07 16 31 H 0.00 0.07 7.74 -2.39 -0.02 0.05 16 32 H 0.33 14.06 8.01 -89.70 -0.72 13.34 16 33 H 0.05 3.07 6.07 -2.39 -0.01 3.05 16 34 H 0.02 0.83 7.79 -2.39 -0.02 0.81 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 38 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -59.04 312.79 3.78 -55.27 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.26 Total: 21.40 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.74 Total: -37.95 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.24 Total: -84.72 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -59.04 3.78 -55.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389301038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.395 kcal (2) G-P(sol) polarization free energy of solvation -59.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds