Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47237 * 2 1 4 4 C 1.52998 * 109.47062 * 119.99737 * 2 1 3 5 5 H 1.08996 * 109.47413 * 300.00240 * 4 2 1 6 6 C 1.53008 * 109.47200 * 180.02562 * 4 2 1 7 7 N 1.46906 * 109.46967 * 60.00278 * 4 2 1 8 8 C 1.46900 * 110.99490 * 205.00019 * 7 4 2 9 9 H 1.09002 * 110.02210 * 326.38823 * 8 7 4 10 10 C 1.54268 * 110.03464 * 87.83613 * 8 7 4 11 11 C 1.54882 * 104.19992 * 142.88904 * 10 8 7 12 12 C 1.54897 * 102.74839 * 322.05790 * 11 10 8 13 13 H 1.08999 * 110.48462 * 279.12630 * 12 11 10 14 14 C 1.50698 * 110.48645 * 156.62027 * 12 11 10 15 15 H 1.08001 * 120.00196 * 241.45645 * 14 12 11 16 16 C 1.37878 * 120.00054 * 61.44993 * 14 12 11 17 17 N 1.31512 * 120.00225 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99899 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47445 * 90.00221 * 18 16 14 20 20 H 1.48504 * 109.46811 * 210.00513 * 18 16 14 21 21 H 1.48504 * 109.47243 * 329.99989 * 18 16 14 22 22 C 1.53876 * 110.02841 * 204.99881 * 8 7 4 23 23 H 1.09007 * 109.46889 * 60.00157 * 1 2 3 24 24 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47094 * 300.00401 * 1 2 3 26 26 H 1.09005 * 109.47214 * 239.99897 * 2 1 3 27 27 H 1.09006 * 109.47089 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.47053 * 299.99743 * 3 2 1 29 29 H 1.08996 * 109.46938 * 59.99944 * 3 2 1 30 30 H 1.09001 * 109.46651 * 180.02562 * 6 4 2 31 31 H 1.09001 * 109.46949 * 299.99642 * 6 4 2 32 32 H 1.08993 * 109.46842 * 59.99983 * 6 4 2 33 33 H 1.00892 * 110.99671 * 328.94976 * 7 4 2 34 34 H 1.09003 * 110.48471 * 24.21212 * 10 8 7 35 35 H 1.09004 * 110.48268 * 261.56978 * 10 8 7 36 36 H 1.08994 * 110.76048 * 203.74464 * 11 10 8 37 37 H 1.09004 * 110.75771 * 80.36858 * 11 10 8 38 38 H 0.97000 * 120.00129 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.03805 * 121.43475 * 22 8 7 40 40 H 1.09002 * 110.03703 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5701 -0.7206 1.2496 7 7 1.5503 -2.1062 1.2493 8 6 1.4875 -2.6423 2.6155 9 1 2.2946 -2.2248 3.2177 10 6 0.1233 -2.3067 3.2528 11 6 -0.2215 -3.5602 4.0946 12 6 0.2884 -4.7206 3.2043 13 1 -0.4386 -4.9522 2.4260 14 6 0.5708 -5.9421 4.0406 15 1 1.5710 -6.3472 4.0844 16 6 -0.4477 -6.5424 4.7500 17 7 -1.6657 -6.0494 4.6965 18 14 -0.0975 -8.0560 5.7872 19 1 0.2785 -7.6382 7.1617 20 1 -1.3118 -8.9091 5.8438 21 1 1.0193 -8.8243 5.1806 22 6 1.5925 -4.1772 2.5848 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.9333 -1.2349 2.1394 31 1 3.9337 -1.2343 0.3597 32 1 3.9329 0.3071 1.2498 33 1 0.6527 -2.1724 0.7933 34 1 -0.6294 -2.1468 2.4807 35 1 0.2071 -1.4284 3.8929 36 1 -1.2976 -3.6370 4.2503 37 1 0.3075 -3.5431 5.0475 38 1 -2.3823 -6.4720 5.1953 39 1 2.4499 -4.5047 3.1727 40 1 1.6896 -4.5243 1.5561 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393502275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = -32.413408 kcal Electronic energy + Delta-G solvation = -16233.834839 eV Core-core repulsion = 13854.004655 eV Total energy + Delta-G solvation = -2379.830184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.62554 -36.47343 -33.09749 -31.57955 -29.48514 -27.97508 -27.18723 -25.79415 -23.67325 -22.47073 -19.71961 -19.55543 -18.67076 -16.51601 -15.75416 -15.18346 -14.50957 -14.38680 -13.70212 -13.55277 -13.30210 -12.46781 -12.35593 -12.27479 -12.22188 -12.01377 -11.64238 -11.56639 -11.04579 -10.97122 -10.84702 -10.65370 -10.57615 -10.46464 -10.32410 -9.90896 -9.68745 -9.44284 -9.05442 -8.70188 -8.29371 -7.85210 -5.93964 -3.96313 3.34278 3.40882 3.44571 4.48619 4.52065 4.81380 4.90889 5.05587 5.37935 5.50171 5.52969 5.56690 5.62250 5.65030 5.77816 5.81404 5.86367 5.92786 5.99424 6.00574 6.15479 6.24529 6.28685 6.40535 6.46853 6.63955 6.70271 6.82598 6.95624 7.17516 7.27151 7.42483 7.69315 7.79338 7.88536 7.98049 8.11809 8.54835 9.06747 9.67339 11.15145 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.057305 B = 0.005564 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.493380 B = 5031.056429 C = 5283.972564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.146 4.146 4 C 0.086 3.914 5 H 0.039 0.961 6 C -0.140 4.140 7 N -0.683 5.683 8 C 0.085 3.915 9 H 0.064 0.936 10 C -0.155 4.155 11 C -0.096 4.096 12 C 0.047 3.953 13 H 0.026 0.974 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.105 4.105 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.339 0.661 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.258 0.742 39 H 0.052 0.948 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 12.630 -7.239 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.024 4.024 5 H 0.057 0.943 6 C -0.198 4.198 7 N -0.316 5.316 8 C -0.024 4.024 9 H 0.082 0.918 10 C -0.194 4.194 11 C -0.135 4.135 12 C 0.028 3.972 13 H 0.044 0.956 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.144 4.144 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.714 12.320 -7.313 15.424 hybrid contribution -0.732 -0.335 1.072 1.340 sum 4.982 11.985 -6.241 14.402 Atomic orbital electron populations 1.21914 0.95483 1.02015 1.01626 1.21269 0.95544 0.96036 0.98868 1.21869 1.01198 0.95859 1.01440 1.21514 0.95485 0.89236 0.96144 0.94268 1.21849 0.95157 1.00447 1.02314 1.60857 1.33640 1.18187 1.18886 1.22335 0.95996 0.97003 0.87091 0.91769 1.23160 0.97010 0.99440 0.99787 1.22364 1.01343 0.92387 0.97356 1.19456 0.91060 0.92804 0.93884 0.95600 1.21241 0.94848 1.11265 1.27539 0.92737 1.24980 0.95148 0.97107 0.96761 1.69963 1.00326 1.40535 1.42244 0.86666 0.77675 0.83300 0.80776 1.20814 1.21347 1.19952 1.22283 1.00469 0.91605 1.00008 0.92669 0.92179 0.92811 0.90595 0.92307 0.92906 0.92904 0.92871 0.92290 0.92947 0.83988 0.93006 0.94022 0.91499 0.93527 0.93232 0.92900 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.96 37.16 0.33 -1.35 16 2 C -0.10 -1.10 2.64 -90.62 -0.24 -1.34 16 3 C -0.15 -1.37 8.84 37.16 0.33 -1.04 16 4 C 0.09 1.14 2.07 -67.71 -0.14 1.00 16 5 H 0.04 0.56 7.77 -51.93 -0.40 0.15 16 6 C -0.14 -1.73 9.05 37.16 0.34 -1.40 16 7 N -0.68 -10.78 5.98 -98.56 -0.59 -11.37 16 8 C 0.09 1.56 3.01 -66.59 -0.20 1.36 16 9 H 0.06 1.16 7.16 -51.93 -0.37 0.79 16 10 C -0.15 -2.97 6.36 -25.07 -0.16 -3.13 16 11 C -0.10 -2.28 5.61 -24.74 -0.14 -2.41 16 12 C 0.05 1.18 2.79 -90.11 -0.25 0.93 16 13 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.51 -14.29 8.49 -34.44 -0.29 -14.58 16 15 H 0.05 1.51 7.58 -52.49 -0.40 1.11 16 16 C 0.06 1.72 5.33 -17.82 -0.09 1.63 16 17 N -0.89 -25.97 12.01 55.43 0.67 -25.30 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.11 -2.27 6.15 -25.61 -0.16 -2.42 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.71 6.21 -51.93 -0.32 0.39 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.71 7.46 -51.93 -0.39 0.32 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 33 H 0.34 5.30 5.54 -39.30 -0.22 5.08 16 34 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.73 7.37 -51.93 -0.38 1.34 16 37 H 0.05 1.15 8.05 -51.93 -0.42 0.73 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.05 1.16 7.68 -51.93 -0.40 0.76 16 40 H 0.05 1.14 7.92 -51.93 -0.41 0.73 16 LS Contribution 304.75 15.07 4.59 4.59 Total: -1.00 -28.11 304.75 -8.32 -36.43 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.29 Total: 1.81 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -0.68 Total: -22.75 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.08 Total: -36.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.11 -8.32 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393502275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.016 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds