Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47186 * 2 1 4 4 C 1.53003 * 109.47171 * 119.99984 * 2 1 3 5 5 C 1.52995 * 109.46910 * 171.52333 * 4 2 1 6 6 H 1.09001 * 109.88692 * 308.61400 * 5 4 2 7 7 C 1.54312 * 110.02488 * 69.73603 * 5 4 2 8 8 C 1.55145 * 103.02162 * 141.76204 * 7 5 4 9 9 C 1.54900 * 101.65268 * 324.34570 * 8 7 5 10 10 N 1.47446 * 109.88840 * 187.58598 * 5 4 2 11 11 C 1.46899 * 110.99641 * 3.68851 * 10 5 4 12 12 H 1.09004 * 109.47321 * 48.15541 * 11 10 5 13 13 C 1.53007 * 109.47021 * 168.14928 * 11 10 5 14 14 C 1.50704 * 109.47510 * 288.14713 * 11 10 5 15 15 H 1.07995 * 119.99363 * 359.97438 * 14 11 10 16 16 C 1.37870 * 119.99895 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00569 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99772 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47296 * 60.00225 * 18 16 14 20 20 H 1.48497 * 109.47415 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46945 * 300.00258 * 18 16 14 22 22 H 1.08998 * 109.47181 * 300.00016 * 1 2 3 23 23 H 1.08995 * 109.47346 * 60.00254 * 1 2 3 24 24 H 1.09000 * 109.47053 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47181 * 239.99984 * 2 1 3 26 26 H 1.09001 * 109.46588 * 70.31497 * 3 2 1 27 27 H 1.09000 * 109.46994 * 190.31723 * 3 2 1 28 28 H 1.08996 * 109.47059 * 310.31815 * 3 2 1 29 29 H 1.09000 * 109.46753 * 51.52739 * 4 2 1 30 30 H 1.08993 * 109.46949 * 291.52436 * 4 2 1 31 31 H 1.09005 * 110.70975 * 260.14782 * 7 5 4 32 32 H 1.08997 * 110.70748 * 23.38200 * 7 5 4 33 33 H 1.08998 * 110.98917 * 82.43721 * 8 7 5 34 34 H 1.08996 * 110.99060 * 206.21502 * 8 7 5 35 35 H 1.08996 * 110.37842 * 278.24214 * 9 8 7 36 36 H 1.09007 * 110.37474 * 155.89551 * 9 8 7 37 37 H 1.09001 * 109.46923 * 175.38915 * 13 11 10 38 38 H 1.09006 * 109.46880 * 55.38937 * 13 11 10 39 39 H 1.08998 * 109.46950 * 295.39412 * 13 11 10 40 40 H 0.96994 * 120.00629 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5551 -0.9080 1.1474 6 1 3.8088 -1.3667 0.1917 7 6 4.2657 0.4553 1.2803 8 6 5.5269 0.1122 2.1162 9 6 4.9810 -0.9762 3.0737 10 7 4.0312 -1.7584 2.2539 11 6 2.9075 -2.2416 3.0674 12 1 2.1317 -2.6415 2.4144 13 6 3.3971 -3.3422 4.0109 14 6 2.3451 -1.1007 3.8756 15 1 2.7794 -0.1153 3.7934 16 6 1.2764 -1.3150 4.7198 17 7 0.7479 -2.5150 4.8202 18 14 0.5789 0.0994 5.7210 19 1 0.1040 1.1674 4.8051 20 1 -0.5570 -0.3891 6.5435 21 1 1.6355 0.6443 6.6110 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8347 1.9004 0.9676 27 1 3.1144 1.4480 -0.1841 28 1 1.5343 2.0067 -0.7835 29 1 1.5583 -1.6959 1.3282 30 1 1.8057 -0.1275 2.1327 31 1 4.5462 0.8410 0.3001 32 1 3.6346 1.1688 1.8102 33 1 6.3187 -0.2868 1.4823 34 1 5.8757 0.9826 2.6719 35 1 4.4653 -0.5162 3.9166 36 1 5.7923 -1.6134 3.4259 37 1 2.5835 -3.6435 4.6707 38 1 4.2284 -2.9661 4.6073 39 1 3.7283 -4.2007 3.4267 40 1 -0.0037 -2.6659 5.4144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396921988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = 1.450912 kcal Electronic energy + Delta-G solvation = -17324.762863 eV Core-core repulsion = 14946.401146 eV Total energy + Delta-G solvation = -2378.361717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16020 -35.26150 -33.62847 -31.12221 -29.31234 -27.59477 -26.51150 -25.37107 -24.38203 -21.46798 -20.17352 -19.62668 -18.09424 -16.46159 -15.18349 -14.95473 -14.39471 -14.15705 -13.45133 -13.23925 -12.97482 -12.55649 -12.21105 -12.10965 -11.59955 -11.31372 -11.13873 -11.07366 -10.91772 -10.74694 -10.70088 -10.29533 -10.26537 -10.11544 -9.98364 -9.76798 -9.66971 -9.57367 -9.30846 -8.85044 -8.28493 -7.03897 -5.96492 -4.03728 3.27210 3.33078 3.35467 4.40086 5.13968 5.25651 5.33100 5.42045 5.50761 5.55984 5.67845 5.80937 6.03581 6.15040 6.18677 6.20455 6.26970 6.33534 6.38630 6.43935 6.53483 6.64216 6.69181 6.74167 6.78706 6.91934 6.95895 7.06353 7.12269 7.15091 7.33893 7.60133 7.63455 7.75661 8.06160 8.23844 8.39118 8.52824 9.01320 9.56910 11.03450 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.013300 C = 0.010292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.300706 B = 2104.749038 C = 2719.873317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.156 4.156 4 C -0.134 4.134 5 C 0.087 3.913 6 H 0.058 0.942 7 C -0.132 4.132 8 C -0.135 4.135 9 C 0.042 3.958 10 N -0.530 5.530 11 C 0.195 3.805 12 H 0.047 0.953 13 C -0.130 4.130 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.022 0.978 39 H 0.011 0.989 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 5.176 -6.662 9.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.212 4.212 4 C -0.171 4.171 5 C -0.022 4.022 6 H 0.076 0.924 7 C -0.170 4.170 8 C -0.173 4.173 9 C -0.086 4.086 10 N -0.254 5.254 11 C 0.088 3.912 12 H 0.065 0.935 13 C -0.188 4.188 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.030 0.970 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.365 4.604 -6.753 8.839 hybrid contribution -0.896 1.471 0.970 1.977 sum 2.469 6.075 -5.783 8.743 Atomic orbital electron populations 1.21786 0.96112 1.01376 1.00642 1.21171 0.95090 0.95993 0.99388 1.22236 1.01587 0.96582 1.00838 1.22602 0.94863 1.02239 0.97425 1.22137 0.94022 0.90853 0.95153 0.92425 1.23115 0.96582 0.98565 0.98755 1.22745 0.97524 0.98607 0.98450 1.23017 0.95384 0.93532 0.96675 1.64015 1.16766 1.33997 1.10598 1.19553 0.87639 0.93252 0.90723 0.93514 1.21760 1.00382 0.96960 0.99706 1.21622 1.14935 0.95633 1.24425 0.92261 1.24862 0.96792 0.95194 0.96648 1.69856 1.24057 1.20341 1.38098 0.86852 0.78754 0.83058 0.80551 1.20325 1.21319 1.20415 0.92828 0.93984 0.92949 0.92606 0.92903 0.91662 0.94292 0.90936 0.87987 0.92201 0.91260 0.92213 0.92366 0.91155 0.92675 0.89809 0.95929 0.96980 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.16 37.16 0.34 -1.90 16 2 C -0.10 -1.59 2.89 -90.62 -0.26 -1.85 16 3 C -0.16 -2.29 7.77 37.16 0.29 -2.00 16 4 C -0.13 -2.64 2.83 -26.73 -0.08 -2.72 16 5 C 0.09 1.67 3.28 -66.73 -0.22 1.45 16 6 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 7 C -0.13 -2.21 4.45 -24.91 -0.11 -2.32 16 8 C -0.14 -2.25 7.08 -24.59 -0.17 -2.42 16 9 C 0.04 0.84 5.42 -2.30 -0.01 0.83 16 10 N -0.53 -11.43 5.12 -216.81 -1.11 -12.54 16 11 C 0.19 4.75 1.90 -68.86 -0.13 4.62 16 12 H 0.05 1.25 5.75 -51.93 -0.30 0.95 16 13 C -0.13 -3.19 9.16 37.16 0.34 -2.85 16 14 C -0.53 -13.38 4.39 -34.44 -0.15 -13.53 16 15 H 0.06 1.52 5.85 -52.49 -0.31 1.21 16 16 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 17 N -0.88 -24.40 11.30 55.43 0.63 -23.77 16 18 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.05 0.83 7.58 -51.93 -0.39 0.43 16 27 H 0.06 0.91 4.76 -51.93 -0.25 0.66 16 28 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 29 H 0.07 1.62 5.80 -51.93 -0.30 1.32 16 30 H 0.10 2.29 5.03 -51.93 -0.26 2.03 16 31 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 32 H 0.07 1.22 6.45 -51.93 -0.33 0.88 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.56 5.43 -51.93 -0.28 1.28 16 36 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.08 2.23 5.96 -51.93 -0.31 1.92 16 38 H 0.02 0.53 7.43 -51.93 -0.39 0.14 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 287.08 15.07 4.33 4.33 Total: -1.00 -26.05 287.08 -8.26 -34.30 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.82 Total: 3.04 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.26 Total: -21.02 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.48 Total: -36.31 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.05 -8.26 -34.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396921988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.752 kcal (2) G-P(sol) polarization free energy of solvation -26.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds