Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47186 * 2 1 4 4 C 1.53003 * 109.47171 * 119.99984 * 2 1 3 5 5 C 1.52995 * 109.46910 * 171.52333 * 4 2 1 6 6 H 1.09001 * 109.88692 * 308.61400 * 5 4 2 7 7 C 1.54312 * 110.02488 * 69.73603 * 5 4 2 8 8 C 1.55145 * 103.02162 * 141.76204 * 7 5 4 9 9 C 1.54900 * 101.65268 * 324.34570 * 8 7 5 10 10 N 1.47446 * 109.88840 * 187.58598 * 5 4 2 11 11 C 1.46899 * 110.99641 * 3.68851 * 10 5 4 12 12 H 1.09004 * 109.47321 * 48.15541 * 11 10 5 13 13 C 1.53007 * 109.47021 * 168.14928 * 11 10 5 14 14 C 1.50704 * 109.47510 * 288.14713 * 11 10 5 15 15 H 1.07995 * 119.99363 * 359.97438 * 14 11 10 16 16 C 1.37870 * 119.99895 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00569 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99772 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47296 * 60.00225 * 18 16 14 20 20 H 1.48497 * 109.47415 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46945 * 300.00258 * 18 16 14 22 22 H 1.08998 * 109.47181 * 300.00016 * 1 2 3 23 23 H 1.08995 * 109.47346 * 60.00254 * 1 2 3 24 24 H 1.09000 * 109.47053 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47181 * 239.99984 * 2 1 3 26 26 H 1.09001 * 109.46588 * 70.31497 * 3 2 1 27 27 H 1.09000 * 109.46994 * 190.31723 * 3 2 1 28 28 H 1.08996 * 109.47059 * 310.31815 * 3 2 1 29 29 H 1.09000 * 109.46753 * 51.52739 * 4 2 1 30 30 H 1.08993 * 109.46949 * 291.52436 * 4 2 1 31 31 H 1.09005 * 110.70975 * 260.14782 * 7 5 4 32 32 H 1.08997 * 110.70748 * 23.38200 * 7 5 4 33 33 H 1.08998 * 110.98917 * 82.43721 * 8 7 5 34 34 H 1.08996 * 110.99060 * 206.21502 * 8 7 5 35 35 H 1.08996 * 110.37842 * 278.24214 * 9 8 7 36 36 H 1.09007 * 110.37474 * 155.89551 * 9 8 7 37 37 H 1.09001 * 109.46923 * 175.38915 * 13 11 10 38 38 H 1.09006 * 109.46880 * 55.38937 * 13 11 10 39 39 H 1.08998 * 109.46950 * 295.39412 * 13 11 10 40 40 H 0.96994 * 120.00629 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5551 -0.9080 1.1474 6 1 3.8088 -1.3667 0.1917 7 6 4.2657 0.4553 1.2803 8 6 5.5269 0.1122 2.1162 9 6 4.9810 -0.9762 3.0737 10 7 4.0312 -1.7584 2.2539 11 6 2.9075 -2.2416 3.0674 12 1 2.1317 -2.6415 2.4144 13 6 3.3971 -3.3422 4.0109 14 6 2.3451 -1.1007 3.8756 15 1 2.7794 -0.1153 3.7934 16 6 1.2764 -1.3150 4.7198 17 7 0.7479 -2.5150 4.8202 18 14 0.5789 0.0994 5.7210 19 1 0.1040 1.1674 4.8051 20 1 -0.5570 -0.3891 6.5435 21 1 1.6355 0.6443 6.6110 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8347 1.9004 0.9676 27 1 3.1144 1.4480 -0.1841 28 1 1.5343 2.0067 -0.7835 29 1 1.5583 -1.6959 1.3282 30 1 1.8057 -0.1275 2.1327 31 1 4.5462 0.8410 0.3001 32 1 3.6346 1.1688 1.8102 33 1 6.3187 -0.2868 1.4823 34 1 5.8757 0.9826 2.6719 35 1 4.4653 -0.5162 3.9166 36 1 5.7923 -1.6134 3.4259 37 1 2.5835 -3.6435 4.6707 38 1 4.2284 -2.9661 4.6073 39 1 3.7283 -4.2007 3.4267 40 1 -0.0037 -2.6659 5.4144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396921988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = -13.063653 kcal Electronic energy + Delta-G solvation = -17325.392262 eV Core-core repulsion = 14946.401146 eV Total energy + Delta-G solvation = -2378.991116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76370 -36.71480 -35.44606 -32.95337 -30.82453 -29.26514 -27.87501 -27.31650 -25.93510 -23.22673 -21.71253 -21.01103 -19.79417 -18.36644 -16.98622 -16.47750 -15.98606 -15.81996 -15.07905 -14.66947 -14.47129 -14.30024 -13.70777 -13.56456 -13.20541 -12.95514 -12.86107 -12.68141 -12.58895 -12.55744 -12.19916 -12.07546 -11.96477 -11.64085 -11.49555 -11.37221 -11.19441 -11.07117 -11.00057 -10.72741 -10.30966 -8.81521 -7.97828 -6.11029 1.37967 1.39812 1.45136 2.42618 3.21452 3.56575 3.95099 4.01539 4.11207 4.26093 4.28735 4.43255 4.71694 4.79112 4.80539 4.88010 4.91103 4.96843 4.99988 5.07864 5.09748 5.14384 5.18158 5.20778 5.25135 5.29534 5.37486 5.45717 5.47912 5.56799 5.62574 5.68843 5.75914 5.94683 6.08470 6.29153 6.48150 6.73839 7.02989 7.51513 8.99075 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.013300 C = 0.010292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.300706 B = 2104.749038 C = 2719.873317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.121 4.121 5 C 0.082 3.918 6 H 0.067 0.933 7 C -0.124 4.124 8 C -0.124 4.124 9 C 0.038 3.962 10 N -0.539 5.539 11 C 0.202 3.798 12 H 0.018 0.982 13 C -0.122 4.122 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.020 3.980 17 N -0.915 5.915 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.275 1.275 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 7.053 -8.095 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.159 4.159 5 C -0.027 4.027 6 H 0.085 0.915 7 C -0.162 4.162 8 C -0.162 4.162 9 C -0.090 4.090 10 N -0.263 5.263 11 C 0.095 3.905 12 H 0.036 0.964 13 C -0.180 4.180 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.179 4.179 17 N -0.555 5.555 18 Si 0.760 3.240 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.200 1.200 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.529 6.497 -8.193 11.396 hybrid contribution -1.230 0.842 1.373 2.026 sum 3.299 7.339 -6.821 10.548 Atomic orbital electron populations 1.21780 0.95932 1.00889 1.01218 1.21137 0.95310 0.97043 0.97831 1.22169 1.02527 0.95058 1.00876 1.22333 0.95437 1.00008 0.98148 1.22262 0.93663 0.92256 0.94483 0.91492 1.23062 0.96083 0.96633 1.00426 1.22719 0.97696 0.97992 0.97819 1.23027 0.94869 0.94478 0.96617 1.63949 1.15922 1.35566 1.10836 1.19307 0.87975 0.92935 0.90303 0.96399 1.21631 0.99452 0.97435 0.99484 1.21730 1.14320 0.95678 1.23624 0.92485 1.25488 0.97450 0.97009 0.97948 1.69982 1.24613 1.21899 1.39046 0.85991 0.78027 0.80693 0.79268 1.19876 1.21505 1.20034 0.94402 0.91167 0.94061 0.91228 0.94298 0.90465 0.92118 0.94631 0.91026 0.89018 0.92166 0.90399 0.90410 0.93754 0.92438 0.92136 0.95714 0.96176 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.16 71.98 0.66 -3.65 16 2 C -0.09 -2.92 2.89 -10.79 -0.03 -2.95 16 3 C -0.15 -3.95 7.77 71.98 0.56 -3.39 16 4 C -0.12 -4.81 2.83 30.59 0.09 -4.73 16 5 C 0.08 3.02 3.28 45.25 0.15 3.16 16 6 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 7 C -0.12 -3.77 4.45 31.77 0.14 -3.63 16 8 C -0.12 -3.72 7.08 31.98 0.23 -3.50 16 9 C 0.04 1.48 5.42 86.77 0.47 1.95 16 10 N -0.54 -23.05 5.12 -839.86 -4.30 -27.34 16 11 C 0.20 10.10 1.90 44.17 0.08 10.19 16 12 H 0.02 1.02 5.75 -2.38 -0.01 1.00 16 13 C -0.12 -6.12 9.16 71.98 0.66 -5.46 16 14 C -0.51 -26.65 4.39 25.60 0.11 -26.53 16 15 H 0.06 2.95 5.85 -2.91 -0.02 2.93 16 16 C 0.02 1.07 5.29 84.65 0.45 1.52 16 17 N -0.92 -52.10 11.30 21.44 0.24 -51.86 16 18 Si 0.93 43.07 29.54 68.60 2.03 45.10 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 26 H 0.04 1.13 7.58 -2.39 -0.02 1.11 16 27 H 0.08 1.84 4.76 -2.39 -0.01 1.83 16 28 H 0.06 1.36 8.11 -2.39 -0.02 1.34 16 29 H 0.04 1.65 5.80 -2.39 -0.01 1.64 16 30 H 0.07 3.27 5.03 -2.39 -0.01 3.26 16 31 H 0.09 2.25 6.56 -2.38 -0.02 2.23 16 32 H 0.06 1.96 6.45 -2.39 -0.02 1.95 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.95 5.43 -2.39 -0.01 1.94 16 36 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.06 3.33 5.96 -2.39 -0.01 3.31 16 38 H 0.02 1.17 7.43 -2.38 -0.02 1.15 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -56.80 287.08 2.53 -54.27 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.99 Total: 16.85 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 3.56 Total: -37.02 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -4.06 Total: -79.21 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -56.80 2.53 -54.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396921988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.210 kcal (2) G-P(sol) polarization free energy of solvation -56.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds